Description: 〈jats:title〉Abstract〈/jats:title〉 〈jats:p〉The North Sea (NS) is changing rapidly. Temporal variations in fishing intensity and eutrophic conditions, along with the ongoing impact of climate change, act in synergy resulting in modifications in marine communities. Although zooplankton has been extensively investigated, studies often ignore the large-sized meso- and macro-zooplankton (>500 µm), including holoplankton and meroplankton taxa. Here, we examined changes in abundances and community structure of these organisms between 1975 and 2018, using univariate and multivariate analysis, at different taxonomic levels. Abrupt changes in the abundances of (sub)communities occurred during different time periods and resulted in a significant restructuration of the entire community in 2006. These changes were consistent with the regime shifts reported in the NS and were a consequence of the environmental pressures on the whole community or on specific subcommunities. In the long term, the community shifted from higher abundances of hydrozoans and holoplankton taxa to an increasing abundance of decapods. Furthermore, we reveal the environmental variables that most explain the variability in the community dynamics, highlighting the importance of temperature and top-down processes. Our study underlines the relevance of investigations at different taxonomic levels, which elucidates how distinct responses to environmental changes ultimately shape the entire community structure.〈/jats:p〉

Description: Global change puts coastal systems under pressure, affecting the ecology and physiology of marine organisms. In particular, fish larvae are sensitive to environmental conditions, and their fitness is an important determinant of fish stock recruitment and fluctuations. To assess the combined effects of warming, acidification and change in food quality, herring larvae were reared in a control scenario (11°C∗pH 8.0) and a scenario predicted for 2100 (14°C∗pH 7.6) crossed with two feeding treatments (enriched in phosphorus and docosahexaenoic acid or not). The experiment lasted from hatching to the beginning of the post-flexion stage (i.e. all fins present) corresponding to 47 days post-hatch (dph) at 14°C and 60 dph at 11°C. Length and stage development were monitored throughout the experiment and the expression of genes involved in growth, metabolic pathways and stress responses were analysed for stage 3 larvae (flexion of the notochord). Although the growth rate was unaffected by acidification and temperature changes, the development was accelerated in the 2100 scenario, where larvae reached the last developmental stage at a smaller size (-8%). We observed no mortality related to treatments and no effect of food quality on the development of herring larvae. However, gene expression analyses revealed that heat shock transcripts expression was higher in the warmer and more acidic treatment. Our findings suggest that the predicted warming and acidification environment are stressful for herring larvae, inducing a decrease in size-at-stage at a precise period of ontogeny. This could either negatively affect survival and recruitment via the extension of the predation window or positively increase the survival by reducing the larval stage duration.

Description: Antarctic krill (Euphausia superba) and Ice krill (Euphausia crystallorophias) are key species within Southern Ocean marine ecosystems. Given their importance in regional food webs, coupled with the uncertain impacts of climate change, the on-going recovery of krill-eating marine mammals, and the expanding commercial fishery for Antarctic krill, there is an increasing need to improve current estimates of their circumpolar habitat distribution. Here, we provide an estimate of the austral summer circumpolar habitat distribution of both species using an ensemble of habitat models and updated environmental covariates. Our models were able to resolve the segregated habitats of both species. We find that extensive potential habitat for Antarctic krill is mainly situated in the open ocean and concentrated in the Atlantic sector of the Southern Ocean, while Ice krill habitat was concentrated more evenly around the continent, largely over the continental shelf. Ice krill habitat was mainly predicted by surface oxygen concentration and water column temperature, while Antarctic krill was additionally characterized by mixed layer depth, distance to the continental shelf edge, and surface salinity. Our results further improve understanding about these key species, helping inform sustainable circumpolar management practices.

Description: We provide an overview of the results devoted to the analysis of the dynamics and economics of shallow lakes, spanning the period from 1999 until now. A shallow lake serves as a typical representative of an ecological system subject to (possibly irreversible) regime shifts. The dynamics of a shallow lake are described by a non-linear model with multiple steady states and multiple domains of attraction and is thus suitable to model the evolution of an ecosystem featuring both resilience within a domain of stability and an abrupt regime shift outside of it. Beyond this, the shallow lake model can also be viewed as a metaphor for many other ecological problems. Due to the broad applicability of this model, there is substantial interest in the management of shallow lakes and both their optimal regulation and competitive usage.

Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Natural history collections are leading successful large-scale projects of specimen digitization (images, metadata, DNA barcodes), thereby transforming taxonomy into a big data science. Yet, little effort has been directed towards safeguarding and subsequently mobilizing the considerable amount of original data generated during the process of naming 15,000–20,000 species every year. From the perspective of alpha-taxonomists, we provide a review of the properties and diversity of taxonomic data, assess their volume and use, and establish criteria for optimizing data repositories. We surveyed 4113 alpha-taxonomic studies in representative journals for 2002, 2010, and 2018, and found an increasing yet comparatively limited use of molecular data in species diagnosis and description. In 2018, of the 2661 papers published in specialized taxonomic journals, molecular data were widely used in mycology (94%), regularly in vertebrates (53%), but rarely in botany (15%) and entomology (10%). Images play an important role in taxonomic research on all taxa, with photographs used in >80% and drawings in 58% of the surveyed papers. The use of omics (high-throughput) approaches or 3D documentation is still rare. Improved archiving strategies for metabarcoding consensus reads, genome and transcriptome assemblies, and chemical and metabolomic data could help to mobilize the wealth of high-throughput data for alpha-taxonomy. Because long-term—ideally perpetual—data storage is of particular importance for taxonomy, energy footprint reduction via less storage-demanding formats is a priority if their information content suffices for the purpose of taxonomic studies. Whereas taxonomic assignments are quasifacts for most biological disciplines, they remain hypotheses pertaining to evolutionary relatedness of individuals for alpha-taxonomy. For this reason, an improved reuse of taxonomic data, including machine-learning-based species identification and delimitation pipelines, requires a cyberspecimen approach—linking data via unique specimen identifiers, and thereby making them findable, accessible, interoperable, and reusable for taxonomic research. This poses both qualitative challenges to adapt the existing infrastructure of data centers to a specimen-centered concept and quantitative challenges to host and connect an estimated $ \le $2 million images produced per year by alpha-taxonomic studies, plus many millions of images from digitization campaigns. Of the 30,000–40,000 taxonomists globally, many are thought to be nonprofessionals, and capturing the data for online storage and reuse therefore requires low-complexity submission workflows and cost-free repository use. Expert taxonomists are the main stakeholders able to identify and formalize the needs of the discipline; their expertise is needed to implement the envisioned virtual collections of cyberspecimens. [Big data; cyberspecimen; new species; omics; repositories; specimen identifier; taxonomy; taxonomic data.]〈/jats:p〉

Description: In the context of forecasted climate change scenarios, the growth of forest tree species at their distribution margin is crucial to adapt current forest management strategies. Analyses of beech (Fagus sylvatica L.) growth have shown high plasticity, but easternmost beech populations have been rarely studied. To describe the response of the marginal beech population to the climate in the far east sites of its distribution, we first compiled new tree ring width chronologies. Then we analyzed climate–growth relationships for three marginal beech populations in the Republic of Moldova. We observed a relatively high growth rate in the marginal populations compared to core distribution sites. Our analyses further revealed a distinct and significant response of beech growth to all climatic variables, assessing for the first time the relationship between growth and vapor pressure deficit (VPD) which described how plant growth responds to drought. These results highlight that accumulated water deficit is an essential limiting factor of beech growth in this region. In conclusion, beech growth in the easternmost marginal population is drought-limited, and the sensitivity to VPD will need to be considered in future studies to update the forest management of other economic and ecologically important species.

Description: The area around the Antarctic Peninsula (AP) is facing rapid climatic and environmental changes, with so far unknown impacts on the benthic microbial communities of the continental shelves. In this study, we investigated the impact of contrasting sea ice cover on microbial community compositions in surface sediments from five stations along the eastern shelf of the AP using 16S ribosomal RNA (rRNA) gene sequencing. Redox conditions in sediments with long ice-free periods are characterized by a prevailing ferruginous zone, whereas a comparatively broad upper oxic zone is present at the heavily ice-covered station. Low ice cover stations were highly dominated by microbial communities of Desulfobacterota (mostly Sva1033, Desulfobacteria, and Desulfobulbia), Myxococcota, and Sva0485, whereas Gammaproteobacteria, Alphaproteobacteria, Bacteroidota, and NB1-j prevail at the heavy ice cover station. In the ferruginous zone, Sva1033 was the dominant member of Desulfuromonadales for all stations and, along with eleven other taxa, showed significant positive correlations with dissolved Fe concentrations, suggesting a significant role in iron reduction or an ecological relationship with iron reducers. Our results indicate that sea ice cover and its effect on organic carbon fluxes are the major drivers for changes in benthic microbial communities, favoring potential iron reducers at stations with increased organic matter fluxes.

Description: In this study, we made use of a regional oak tree-ring network from six stands that cover the northern Moldavian Plateau (eastern Europe) to analyze how different tree ring parameters (i.e., early wood tree-ring width, late wood tree-ring width, and total tree-ring width) of Quercus sp. are influenced by the occurrence of extreme climatic events (e.g., long-lasting drought events). In order to explore the influence of extreme hydroclimatic events on tree ring width, we have selected each of the six most extreme positive and negative years of tree growth and addressed the seasonal cycle of tree growth in comparison with the main climatic parameters, then evaluated both the current and lagged consequences of extreme hydroclimatic events on tree ring width and the capacity of trees to recover. Our results indicate that the variability of oak tree ring width from the Moldavian Plateau is mainly influenced by the availability of water resources, and that an important limiting growth factor for Quercus sp. is the occurrence of long-lasting drought events, e.g., at least two years in a row with severe drought conditions.

Description: The eastern part of Europe is very poorly represented in the Global Network for Isotopes in Precipitation (GNIP) database, mainly because the monitoring of the stable isotopes in precipitation started only recently compared with other regions. In this respect, the main objective of this article is to fill the gap in the GNIP database over the eastern part of Europe and show the temporal variability and potential drivers of an extended network of δ18O values in precipitation collected from 27 locations in Romania and the Republic of Moldova. We also present the first high-resolution map of the spatio-temporal distribution of δ18O values in precipitation in Romania and the Republic of Moldova, according to an observational dataset. According to our results, the stations from western and northern Romania tend to have LMWLS with higher values than those from southwestern Romania. The monthly variation of the δ18O and δ2H showed a clearly interannual variation, with distinct seasonal differences, following the seasonal temperatures. The analysis of the spatial distribution of stable isotopes in precipitation water was made on the basis of both observational data and modeled data. This allowed us to study the origin of the air moisture and the interaction with regional and local patterns and to analyze the link between the spatial δ18O variations and the large-scale circulation patterns on a seasonal scale.