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  • 1
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    Research Data Management Training for Geographers: First Impressions (2016)
    MDPI
    In:  ISPRS International Journal of Geo-Information, 5 (4). p. 40.
    Details
    Publication Date: 2019-02-01
    Description: Sharing and secondary analysis of data have become increasingly important for research. Especially in geography, the collection of digital data has grown due to technological changes. Responsible handling and proper documentation of research data have therefore become essential for funders, publishers and higher education institutions. To achieve this goal, universities offer support and training in research data management. This article presents the experiences of a pilot workshop in research data management, especially for geographers. A discipline-specific approach to research data management training is recommended. The focus of this approach increases researchers’ interest and allows for more specific guidance. The instructors identified problems and challenges of research data management for geographers. In regards to training, the communication of benefits and reaching the target groups seem to be the biggest challenges. Consequently, better incentive structures as well as communication channels have to be established.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.3390/ijgi5040040
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 2
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    Sinking of Gelatinous Zooplankton Biomass Increases Deep Carbon Transfer Efficiency Globally (2019)
    AGU (American Geophysical Union) | Wiley
    In:  Global Biogeochemical Cycles, 33 (12). pp. 1764-1783.
    Details
    Publication Date: 2022-01-31
    Description: Gelatinous zooplankton (Cnidaria, Ctenophora, and Urochordata, namely, Thaliacea) are ubiquitous members of plankton communities linking primary production to higher trophic levels and the deep ocean by serving as food and transferring “jelly‐carbon” (jelly‐C) upon bloom collapse. Global biomass within the upper 200 m reaches 0.038 Pg C, which, with a 2–12 months life span, serves as the lower limit for annual jelly‐C production. Using over 90,000 data points from 1934 to 2011 from the Jellyfish Database Initiative as an indication of global biomass (JeDI: http://jedi.nceas.ucsb.edu, http://www.bco‐dmo.org/dataset/526852), upper ocean jelly‐C biomass and production estimates, organism vertical migration, jelly‐C sinking rates, and water column temperature profiles from GLODAPv2, we quantitatively estimate jelly‐C transfer efficiency based on Longhurst Provinces. From the upper 200 m production estimate of 0.038 Pg C year−1, 59–72% reaches 500 m, 46–54% reaches 1,000 m, 43–48% reaches 2,000 m, 32–40% reaches 3,000 m, and 25–33% reaches 4,500 m. This translates into ~0.03, 0.02, 0.01, and 0.01 Pg C year−1, transferred down to 500, 1,000, 2,000, and 4,500 m, respectively. Jelly‐C fluxes and transfer efficiencies can occasionally exceed phytodetrital‐based sediment trap estimates in localized open ocean and continental shelves areas under large gelatinous blooms or jelly‐C mass deposition events, but this remains ephemeral and transient in nature. This transfer of fast and permanently exported carbon reaching the ocean interior via jelly‐C constitutes an important component of the global biological soft‐tissue pump, and should be addressed in ocean biogeochemical models, in particular, at the local and regional scale.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
    Format: text
    Format: text
    DOI: 10.1029/2019GB006265
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 3
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    New Knowledge on Distribution and Abundance of Toxic Microalgal Species and Related Toxins in the Northwestern Black Sea (2022)
    MDPI
    In:  EPIC3Toxins, MDPI, 14(10), pp. 685, ISSN: 2072-6651
    Details
    Publication Date: 2022-10-16
    Description: Numerous potentially toxic plankton species commonly occur in the Black Sea, and phycotoxins have been reported. However, the taxonomy, phycotoxin profiles, and distribution of harmful microalgae in the basin are still understudied. An integrated microscopic (light microscopy) and molecular (18S rRNA gene metabarcoding and qPCR) approach complemented with toxin analysis was applied at 41 stations in the northwestern part of the Black Sea for better taxonomic coverage and toxin profiling in natural populations. The combined dataset included 20 potentially toxic species, some of which (Dinophysis acuminata, Dinophysis acuta, Gonyaulax spinifera, and Karlodinium veneficum) were detected in over 95% of the stations. In parallel, pectenotoxins (PTX-2 as a major toxin) were registered in all samples, and yessotoxins were present at most of the sampling points. PTX-1 and PTX-13, as well as some YTX variants, were recorded for the first time in the basin. A positive correlation was found between the cell abundance of Dinophysis acuta and pectenotoxins, and between Lingulodinium polyedra and Protoceratium reticulatum and yessotoxins. Toxic microalgae and toxin variant abundance and spatial distribution was associated with environmental parameters. Despite the low levels of the identified phycotoxins and their low oral toxicity, chronic toxic exposure could represent an ecosystem and human health hazard.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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    PAPER (OA)
  • 4
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    Demonstration of annual/quarterly assessments and description of the production system (2022)
    EuroSea
    Details
    Publication Date: 2022-11-04
    Description: This task set out to increase communication between the ocean monitoring and modelling communities in the Baltic Sea area. Through these improved communications, the goal was to advance and improve the HELCOM marine environmental assessments. To gain confidence in the numerical model outputs, an effort was undertaken to ensure ocean observing in-situ data, collected by multiple nations in the Baltic Sea, was assimilated into a numerical model. Here, we report on the development of indicators, as requested by our stakeholders, and we discuss if the Baltic Sea numerical modelling efforts are ready to augment regional environmental status reports, and can our results help guide environmental management in the region.
    Type: Report , NonPeerReviewed , info:eu-repo/semantics/book
    Format: text
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    OceanRep: Report - other report
  • 5
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    Challenges in the Paleoclimatic Evolution of the Arctic and Subarctic Pacific since the Last Glacial Period — the Sino-German Pacific – Arctic Experiment (SiGePAX) (2019)
    MDPI
    In:  EPIC3Challenges, MDPI, 10(1), pp. 1-22, ISSN: 2078-1547
    Details
    Publication Date: 2021-02-16
    Description: Arctic and subarctic regions are sensitive to climate change and, reversely, provide dramatic feedbacks to the global climate. With a focus on discovering paleoclimate and paleoceanographic evolution in the Arctic and Northwest Pacific Oceans during the last 20,000 years, we proposed this German–Sino cooperation program according to the announcement “Federal Ministry of Education and Research (BMBF) of the Federal Republic of Germany for a German–Sino cooperation program in the marine and polar research”. Our proposed program integrates the advantages of the Arctic and Subarctic marine sediment studies in AWI (Alfred Wegener Institute) and FIO (First Institute of Oceanography). For the first time, the collection of sediment cores can cover all climatological key regions in the Arctic and Northwest Pacific Oceans. Furthermore, the climate modeling work at AWI enables a “Data-Model Syntheses”, which are crucial for exploring the underlying mechanisms of observed changes in proxy records.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
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    PAPER (OA)
  • 6
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    Partitioning of the Open Waters of the Gulf of Mexico Based on the Seasonal and Interannual Variability of Chlorophyll Concentration (2018)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2022-03-09
    Description: The seasonal and interannual variability of chlorophyll in the Gulf of Mexico open waters is studied using a three‐dimensional coupled physical‐biogeochemical model. A 5 years hindcast driven by realistic open‐boundary conditions, atmospheric forcings, and freshwater discharges from rivers is performed. The use of recent in situ observations allowed an in‐depth evaluation of the model nutrient and chlorophyll seasonal distributions, including the chlorophyll vertical structure. We find that different chlorophyll patterns of temporal variability coexist in the deep basin which thereby cannot be considered as a homogeneous region with respect to chlorophyll dynamics. A partitioning of the Gulf of Mexico open waters based on the winter chlorophyll concentration increase is then proposed. This partition is basically explained by the amount of nutrients injected into the euphotic layer which is highly constrained by the dynamic of the winter mixed layer. The seasonal and interannual variability appears to be affected by the variability of atmospheric fluxes and mesoscale dynamics (Loop Current eddies in particular). Finally, estimates of primary production in the deep basin are provided.
    Type: Article , PeerReviewed
    Format: text
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 7
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    A Spaceborne Multisensory, Multitemporal Approach to Monitor Water Level and Storage Variations of Lakes (2016)
    MDPI
    In:  Water, 8 (11). p. 478.
    Details
    Publication Date: 2019-02-01
    Description: Lake Urmia, the second largest saline Lake on earth and a highly endangered ecosystem, is on the brink of a serious environmental disaster similar to the catastrophic death of the Aral Sea. Progressive drying has been observed during the last decade, causing dramatic changes to Lake Urmia’s surface and its regional water supplies. The present study aims to improve monitoring of spatiotemporal changes of Lake Urmia in the period 1975–2015 using the multi-temporal satellite altimetry and Landsat (5-TM, 7-ETM+ and 8-OLI) images. In order to demonstrate the impacts of climate change and human pressure on the variations in surface extent and water level, Lake Sevan and Van Lake with different characteristics were studied along with the Urmia Lake. Normalized Difference Water Index-Principal Components Index (NDWI-PCs), Normalized Difference Water Index (NDWI), Modified NDWI (MNDWI), Normalized Difference Moisture Index (NDMI), Water Ratio Index (WRI), Normalized Difference Vegetation Index (NDVI), Automated Water Extraction Index (AWEI), and MultiLayer Perceptron Neural Networks (MLP NNs) classifier were investigated for the extraction of surface water from Landsat data. The presented results revealed that MLP NNs has a better performance in the cases where the other models generate poor accuracy. The results show that the area of Lake Sevan and Van Lake have increased while the area of Lake Urmia has decreased by ~65.23% in the past decades, far more than previously reported (~25% to 50%). Urmia Lake’s shoreline has been receding severely between 2010 and 2015 with no sign of recovery, which has been partly blamed on prolonged droughts, aggressive regional water resources development plans, intensive agricultural activities, and anthropogenic changes to the system. The results also indicated that (among the proposed factors) changes in inflows due to overuse of surface water resources and constructing dams (mostly during 1995–2005) are the main reasons for Urmia Lake’s shoreline receding. The model presented in this manuscript can be used by managers as a decision support system to find the effects of building new dams or other infrastructures
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.3390/w8110478
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 8
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    Challenges in the Paleoclimatic Evolution of the Arctic and Subarctic Pacific since the Last Glacial Period—The Sino–German Pacific–Arctic Experiment (SiGePAX) (2019)
    MDPI
    In:  Challenges, 10 (1). Art.Nr. 13.
    Details
    Publication Date: 2021-01-08
    Description: Arctic and subarctic regions are sensitive to climate change and, reversely, provide dramatic feedbacks to the global climate. With a focus on discovering paleoclimate and paleoceanographic evolution in the Arctic and Northwest Pacific Oceans during the last 20,000 years, we proposed this German–Sino cooperation program according to the announcement “Federal Ministry of Education and Research (BMBF) of the Federal Republic of Germany for a German–Sino cooperation program in the marine and polar research”. Our proposed program integrates the advantages of the Arctic and Subarctic marine sediment studies in AWI (Alfred Wegener Institute) and FIO (First Institute of Oceanography). For the first time, the collection of sediment cores can cover all climatological key regions in the Arctic and Northwest Pacific Oceans. Furthermore, the climate modeling work at AWI enables a “Data-Model Syntheses”, which are crucial for exploring the underlying mechanisms of observed changes in proxy records.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.3390/challe10010013
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 9
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    Gas hydrate distribution and hydrocarbon maturation north of the Knipovich Ridge, western Svalbard margin (2016)
    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Solid Earth, 121 (3). pp. 1405-1424.
    Details
    Publication Date: 2019-09-23
    Description: A bottom-simulating reflector (BSR) occurs west of Svalbard in water depths exceeding 600 m, indicating that gas hydrate occurrence in marine sediments is more widespread in this region than anywhere else on the eastern North Atlantic margin. Regional BSR mapping shows the presence of hydrate and free gas in several areas, with the largest area located north of the Knipovich Ridge, a slow-spreading ridge segment of the Mid Atlantic Ridge system. Here, heat flow is high (up to 330 mW m-2), increasing towards the ridge axis. The coinciding maxima in across-margin BSR width and heat flow suggest that the Knipovich Ridge influenced methane generation in this area. This is supported by recent finds of thermogenic methane at cold seeps north of the ridge termination. To evaluate the source rock potential on the western Svalbard margin, we applied 1D petroleum system modeling at three sites. The modeling shows that temperature and burial conditions near the ridge were sufficient to produce hydrocarbons. The bulk petroleum mass produced since the Eocene is at least 5 kt and could be as high as ~0.2 Mt. Most likely, source rocks are Miocene organic-rich sediments and a potential Eocene source rock that may exist in the area if early rifting created sufficiently deep depocenters. Thermogenic methane production could thus explain the more widespread presence of gas hydrates north of the Knipovich Ridge. The presence of microbial methane on the upper continental slope and shelf indicates that the origin of methane on the Svalbard margin varies spatially.
    Type: Article , PeerReviewed
    Format: text
    Format: text
    DOI: 10.1002/2015JB012083
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 10
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    Targeted Isolation of Tsitsikammamines from the Antarctic Deep-Sea Sponge Latrunculia biformis by Molecular Networking and Anticancer Activity (2018)
    MDPI
    Details
    Publication Date: 2023-05-04
    Description: The Antarctic deep-sea sponge Latrunculia (Latrunculia) biformis Kirkpatrick, 1908 (Class Demospongiae Sollas, Order Poecilosclerida Topsent, Latrunculiidae Topsent) was selected for chemical analyses due to its potent anticancer activity. Metabolomic analysis of its crude extract by HRMS/MS-based molecular networking showed the presence of several clusters of pyrroloiminoquinone alkaloids, i.e., discorhabdin and epinardin-type brominated pyridopyrroloquinolines and tsitsikammamines, the non-brominated bis-pyrroloiminoquinones. Molecular networking approach combined with a bioactivity-guided isolation led to the targeted isolation of the known pyrroloiminoquinone tsitsikammamine A (1) and its new analog 16,17-dehydrotsitsikammamine A (2). The chemical structures of the compounds 1 and 2 were elucidated by spectroscopic analysis (one-dimensional (1D) and two-dimensional (2D) NMR, HR-ESIMS). Due to minute amounts, molecular modeling and docking was used to assess potential affinities to potential targets of the isolated compounds, including DNA intercalation, topoisomerase I-II, and indoleamine 2,3-dioxygenase enzymes. Tsitsikammamines represent a small class of pyrroloiminoquinone alkaloids that have only previously been reported from the South African sponge genus Tsitsikamma Samaai & Kelly and an Australian species of the sponge genus Zyzzya de Laubenfels. This is the first report of tsitsikammamines from the genus Latrunculia du Bocage and the successful application of molecular networking in the identification of comprehensive chemical inventory of L.biformis followed by targeted isolation of new molecules. This study highlights the high productivity of secondary metabolites of Latrunculia sponges and may shed new light on their biosynthetic origin and chemotaxonomy
    Type: Article , PeerReviewed
    Format: text
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    OceanRep: Article in a Scientific Journal - peer-reviewed
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