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  • 1
    Electronic Resource
    Electronic Resource
    Intrinsic Tryptophan Fluorescence of Human Serum Proteins and Related Conformational Changes (2000)
    Springer
    The protein journal 19 (2000), S. 637-642 
    Details
    ISSN: 1573-4943
    Keywords: Human serum proteins ; fluorescence ; ethanol ; denaturation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The unfolding of human serum proteins (HSP) was studied by measuring the intrinsic fluorescence intensity at a wavelength of excitation corresponding to tryptophan's or typosine's fluorescence and surface hydrophobicity. The maxima emission wavelengths (λmax) of human serum albumin (HSA) and human serum globulin (HSG) before beer consumption (BC) were 336.0 and 337.0 nm and after BC shifted to 335.0 and 334.0 nm, respectively. The surface hydrophobicity slightly increased after BC. In a solution of 8 M urea the λmax of BSA shifted to 346.4 and that of BSG to 342.5 nm. In contrast, in the same solution but after BC the λmax positions of HSA and HSG shifted to 355.9 and 357.7 nm, respectively. A decrease in fluorescence intensity, a shift in the maximum of emission, and an increase in surface hydrophobicity which reflected unfolding of proteins were observed. Here we provide evidence that the loosening of the HSP structure takes place primarily in various concentrations of urea before and after beer consumption. Differences in the fluorescence behavior of the proteins are attributed to disruption of the structure of proteins by denaturants as well as by the change in their compactability as a result of ethanol consumption.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1007192017291
    Location Call Number Limitation Availability
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    Paper (German National Licenses)
    Fulltext
  • 2
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    The ocean sampling day consortium (2015)
    Oxford Univ. Press
    In:  GigaScience, 4 (1). Art.Nr. 27.
    Details
    Publication Date: 2019-09-23
    Description: Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
    Format: text
    Format: text
    Format: text
    Format: text
    DOI: 10.1186/s13742-015-0066-5
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 3
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    A Catalogue of Marine Biodiversity Indicators (2016)
    Frontiers
    In:  Frontiers in Marine Science, 3 (Art. Nr. 207).
    Details
    Publication Date: 2019-02-01
    Description: A Catalogue of Marine Biodiversity Indicators was developed with the aim of providing the basis for assessing the environmental status of the marine ecosystems. Useful for the implementation of the Marine Strategy Framework Directive (MSFD), this catalogue allows the navigation of a database of indicators mostly related to biological diversity, non-indigenous species, food webs, and seafloor integrity. Over 600 indicators were compiled, which were developed and used in the framework of different initiatives (e.g., EU policies, research projects) and in national and international contexts (e.g., Regional Seas Conventions, and assessments in non-European seas). The catalogue reflects the current scientific capability to address environmental assessment needs by providing a broad coverage of the most relevant indicators for marine biodiversity and ecosystem integrity. The available indicators are reviewed according to their typology, data requirements, development status, geographical coverage, relevance to habitats or biodiversity components, and related human pressures. Through this comprehensive overview, we discuss the potential of the current set of indicators in a wide range of contexts, from large-scale to local environmental programs, and we also address shortcomings in light of current needs. Developed by the DEVOTES Project, the catalogue is freely available through the DEVOTool software application, which provides browsing and query options for the associated metadata. The tool allows extraction of ranked indicator lists best fulfilling selected criteria, enabling users to search for suitable indicators to address a particular biodiversity component, ecosystem feature, habitat, or pressure in a marine area of interest. This tool is useful for EU Member States, Regional Sea Conventions, the European Commission, non-governmental organizations, managers, scientists, and any person interested in marine environmental assessment. It allows users to build, complement or adjust monitoring programs and has the potential to improve comparability and foster transfer of knowledge across marine regions.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.3389/fmars.2016.00207
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 4
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    Faecal pellet production of copepoda collected at different water depth in the eastern Mediterranean Sea during SES_GR2 (2015)
    PANGAEA
    Details
    Publication Date: 2023-03-07
    Description: The SES_GR2-Mesozooplankton faecal pellet production rates dataset is based on samples taken during August and September 2008 in the Northern Libyan Sea, Southern Aegean Sea and the North-Eastern Aegean Sea. Mesozooplankton is collected by vertical tows within the 0–100 m layer or within the Black sea water body mass layer in the case of the NE Aegean, using a WP-2 200 µm net equipped with a large non-filtering cod-end (10 l). Macrozooplankton organisms are removed using a 2000 µm net. A few unsorted animals (approximately 100) are placed inside several glass beaker of 250 ml filled with GF/F or 0.2 µm Nucleopore filtered seawater and with a 100 µm net placed 1 cm above the beaker bottom. Beakers are then placed in an incubator at natural light and maintaining the in situ temperature. After 1 hour pellets are separated from animals and placed in separated flasks and preserved with formalin. Pellets are counted and measured using an inverted microscope. Animals are scanned and counted using an image analysis system. Carbon- Specific faecal pellet production is calculated from a) faecal pellet production, b) individual carbon: Animals are scanned and their body area is measured using an image analysis system. Body volume is then calculated as an ellipsoid using the major and minor axis of an ellipse of same area as the body. Individual carbon is calculated from a carbon- total body volume of organisms (relationship obtained for the Mediterranean Sea by Alcaraz et al. (2003) divided by the total number of individuals scanned and c) faecal pellet carbon: Faecal pellet length and width is measured using an inverted microscope. Faecal pellet volume is calculated from length and width assuming cylindrical shape. Conversion of faecal pellet volume to carbon is done using values obtained in the Mediterranean from: a) faecal pellet density 1,29 g cm**3 (or pg µm**3) from Komar et al. (1981); b) faecal pellet DW/WW=0,23 from Elder and Fowler (1977) and c) faecal pellet C%DW=25,5 Marty et al. (1994).
    Keywords: 00A1b; 0A10c; 0I05d; 0L02c; Aegaeo; Computed/Converted; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; Eastern Mediterranean Sea; Event label; Fecal pellet production as carbon; Fecal pellet production rate per individual; Latitude of event; Longitude of event; Measured/Determined; Mediterranean Sea; Optional event label; SES_GR2; SES_GR2-00A1b_WP2; SES_GR2-0A10c_WP2; SES_GR2-0I05d_WP2; SES_GR2-0L02c_WP2; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; WP2; WP-2 towed closing plankton net
    Type: Dataset
    Format: text/tab-separated-values, 16 data points
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    DATA PANGAEA
  • 5
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    (Table 4) Mesozooplankton abundance and biomass and relative percentage of key zooplankton groups along the Bulgarian coast, Black Sea
    PANGAEA
    In:  Supplement to: Stel'makh, Lyudmila V; Babich, I I; Tugrul, Suleyman; Moncheva, Snejana; Stefanova, Kremena (2009): Phytoplankton growth rate and zooplankton grazing in the western part of the Black Sea in the autumn period. Translated from Okeanologiya, 2009, 49(1), 90-100, Oceanology, 49(1), 83-92, https://doi.org/10.1134/S000143700901010X
    Details
    Publication Date: 2023-05-12
    Description: Results of studies during Project of an international expedition onboard R/V Vladimir Parshin in September-October 2005 are presented. Intensive development of Bacillariophyceae and Dynophyceae was recorded in coastal waters of Bulgaria, Turkey, and in the Danube River delta during period of investigations. Increase in algae population was accompanied by rising of chlorophyll a concentration up to 2.0-5.5 µg/l. In the deep water region it did not exceed 0.5 µg/l. Phytoplankton growth rate in the surface water layer varied from 0.1 to 1.0 1/day. This parameter and NO2+NO3 concentration, as well as the silicon concentration were correlative, as was described by the Michaelis-Menten equation. Phytoplankton growth was affected by basic nutrients. Zooplankton grazing varied from 0.10 to 0.69 1/day and average values in different regions varied by 1.5 times. Microalgae size range is one of major factors of grazing regulation. Rate of phytoplankton consumption was decreasing with increasing the largest diatom Pseudosolenia calcar-avis impact on total biomass of nano- and microphytoplankton.
    Keywords: Archive of Ocean Data; ARCOD; Biomass determination using Chislenko nomograms; Black Sea; Calculated; Chaetognatha; Copepoda; Counting; Depth, bottom/max; Depth, top/min; DEPTH, water; Elevation of event; Event label; Latitude of event; Longitude of event; Meroplankton; Mesozooplankton; Mesozooplankton, biomass; Mesozooplankton, other groups; VP05-P1KR; VP05-P1VA; VP05-P3VA; VP05-P4KR; VP05-P4VA; VP05-P6KR; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 72 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 6
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    Abundance and biomass of phytoplankton in the western part of the Black Sea in September 1991 during the NATO Programme Hydroblack (2015)
    PANGAEA
    Details
    Publication Date: 2023-07-10
    Description: The samples were concentrated down to 50 cm**3 by slow decantation after storage for 20 days in a cool and dark place. The species identification was done under light microscope OLIMPUS–BS41 connected to a video-interactive image analysis system at magnification of the ocular 10X and objective – 40X. A Sedgwick-Rafter camera (1ml) was used for counting. 400 specimen were counted for each sample, while rare and large species were checked in the whole sample (Manual of phytoplankton, 2005). Species identification was mainly after Carmelo T. (1997) and Fukuyo, Y. (2000). Total phytoplankton abundance was calculated as sum of taxon-specific abundances. Total phytoplankton biomass was calculated as sum of taxon-specific biomasses. The cell biovolume was determined based on morpho-metric measurement of phytoplankton units and the corresponding geometric shapes as described in detail in (Edier, 1979).
    Keywords: Ak091991; Akademik; Bacillariophyta; Black Sea; Bottle, Niskin; Computed/Converted; Counting; Date/Time of event; DEPTH, water; Dinophyceae; Event label; Latitude of event; Longitude of event; M30K05; M30K05_07091991; M30K20; M30K20_07091991; M30K45; M30K45_07091991; M30L15; M30L15_08091991; M30L45; M30L45_08091991; M40J50; M40J50_07091991; M50L15; M50L15_08091991; N10K02; N10K02_04091991; N10L15; N10L15_04091991; N10N15; N10N15_04091991; N30K40; N30K40_06091991; N30K50; N30K50_06091991; N30L15; N30L15_06091991; N30L45; N30L45_05091991; N30M15; N30M15_05091991; N30M45; N30M45_05091991; N30N15; N30N15_05091991; N30N45; N30N45_05091991; NIS; P10N15; P10N15_09091991; Phytoplankton; Phytoplankton, other; Phytoplankton, total, biomass; Sample comment; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes
    Type: Dataset
    Format: text/tab-separated-values, 660 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 7
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    Abundance and biomass of phytoplankton in the western part of the Black Sea during the R/V Akademik cruise Ak082001 in August 2001 (2015)
    PANGAEA
    Details
    Publication Date: 2023-07-09
    Description: The dataset is composed of 41 samples from 10 stations. The phytoplankton samples were collected by 5l Niskin bottles attached to the CTD system. The sampling depths were selected according to the CTD profile and the in situ fluorometer readings: surface, temperature, salinity and fluorescence gradients and 1 m above the bottom. At some stations phytoplankton net samples (20 µm mesh-size) were collected to assist species biodiversity examination. The samples (1l sea water) were preserved in 4% buffered to pH 8-8.2 with disodiumtetraborate formaldehyde solution and stored in plastic containers. On board at each station few live samples were qualitatively examined under microscope for preliminary analysis of taxonomic composition and dominant species. The taxon-specific phytoplankton abundance samples were concentrated down to 50 cm**3 by slow decantation after storage for 20 days in a cool and dark place. The species identification was done under light microscope OLIMPUS–BS41 connected to a video-interactive image analysis system at magnification of the ocular 10X and objective – 40X. A Sedgwick-Rafter camera (1ml) was used for counting. 400 specimen were counted for each sample, while rare and large species were checked in the whole sample (Manual of phytoplankton, 2005). Species identification was mainly after Carmelo T. (1997) and Fukuyo, Y. (2000). Total phytoplankton abundance was calculated as sum of taxon-specific abundances. Total phytoplankton biomass was calculated as sum of taxon-specific biomasses. The cell biovolume was determined based on morpho-metric measurement of phytoplankton units and the corresponding geometric shapes as described in detail in (Edier, 1979).
    Keywords: Ak082001; Ak082001_201_482001; Ak082001_202_482001; Ak082001_203_482001; Ak082001_204_582001; Ak082001_300_482001; Ak082001_301_482001; Ak082001_302_582001; Ak082001_303_582001; Ak082001_304_582001; Ak082001_305_582001; Akademik; Amphora hyalina; Amphora hyalina, biomass; Black Sea; Bottle, Niskin; Calcidiscus leptoporus; Calcidiscus leptoporus, biomass; Cerataulina pelagica; Cerataulina pelagica, biomass; Ceratium furca; Ceratium furca, biomass; Ceratium furca var. eugrammum; Ceratium furca var. eugrammum, biomass; Ceratium fusus; Ceratium fusus, biomass; Ceratium lineatum; Ceratium lineatum, biomass; Ceratium tripos; Ceratium tripos, biomass; Chaetoceros affinis; Chaetoceros affinis, biomass; Chaetoceros anastomosans; Chaetoceros anastomosans, biomass; Chaetoceros sp.; Chaetoceros sp., biomass; Coccolithinae sp.; Coccolithinae sp., biomass; Coccolithus sp.; Coccolithus sp., biomass; Computed/Converted; Counting; Cyanobacteria; Cyanobacteria, biomass; Cyanophyceae; Cyanophyceae, biomass; Cyclotella caspia; Cyclotella caspia, biomass; Cylindrotheca closterium; Cylindrotheca closterium, biomass; Dactyliosolen fragilissimus; Dactyliosolen fragilissimus, biomass; Date/Time of event; DEPTH, water; Dinophysis acuminata; Dinophysis acuminata, biomass; Dinophysis acuta; Dinophysis acuta, biomass; Dinophysis caudata; Dinophysis caudata, biomass; Dinophysis fortii; Dinophysis fortii, biomass; Dinophysis hastata; Dinophysis hastata, biomass; Dinophysis sacculus; Dinophysis sacculus, biomass; Diplopsalis lenticula; Diplopsalis lenticula, biomass; Ebria tripartita; Ebria tripartita, biomass; Emiliania huxleyi; Emiliania huxleyi, biomass; Event label; Flagellates; Flagellates, biomass; Glenodinium paululum; Glenodinium paululum, biomass; Glenodinium sp.; Glenodinium sp., biomass; Gonyaulax catenata; Gonyaulax catenata, biomass; Gonyaulax diegensis; Gonyaulax diegensis, biomass; Gonyaulax digitale; Gonyaulax digitale, biomass; Gonyaulax grindleyi; Gonyaulax grindleyi, biomass; Gonyaulax polygramma; Gonyaulax polygramma, biomass; Gonyaulax sp.; Gonyaulax sp., biomass; Gonyaulax spinifera; Gonyaulax spinifera, biomass; Gymnodinium sanguineum; Gymnodinium sanguineum, biomass; Gymnodinium sp.; Gymnodinium sp., biomass; Gyrodinium fusiforme; Gyrodinium fusiforme, biomass; Gyrodinium lachryma; Gyrodinium lachryma, biomass; Gyrodinium sp.; Gyrodinium sp., biomass; Gyrodinium spirale; Gyrodinium spirale, biomass; Hermesinum adriaticum; Hermesinum adriaticum, biomass; Heterocapsa triquetra; Heterocapsa triquetra, biomass; Hillea fusiformis; Hillea fusiformis, biomass; Latitude of event; Leptocylindrus minimus; Leptocylindrus minimus, biomass; Lingulodinium polyedrum; Lingulodinium polyedrum, biomass; Longitude of event; Measured/Determined; NIS; Nitzschia tenuirostris; Nitzschia tenuirostris, biomass; Oscillatoria sp.; Oscillatoria sp., biomass; Pennata sp.; Pennata sp., biomass; Peridinium granii forma mite; Peridinium granii forma mite, biomass; Peridinium minusculum; Peridinium minusculum, biomass; Peridinium pedunculatum; Peridinium pedunculatum, biomass; Peridinium sp.; Peridinium sp., biomass; Phalacroma rotundatum; Phalacroma rotundatum, biomass; Pheopolykrikos hartmannii; Pheopolykrikos hartmannii, biomass; Phytoplankton; Phytoplankton, total, biomass; Pleurosigma elongatum; Pleurosigma elongatum, biomass; Polykrikos schwarzii; Polykrikos schwarzii, biomass; Pontosphaera nigra; Pontosphaera nigra, biomass; Prorocentrum compressum; Prorocentrum compressum, biomass; Prorocentrum cordatum; Prorocentrum cordatum, biomass; Prorocentrum gracile; Prorocentrum gracile, biomass; Prorocentrum marinum; Prorocentrum marinum, biomass; Prorocentrum micans; Prorocentrum micans, biomass; Protoperidinium conicum; Protoperidinium conicum, biomass; Protoperidinium divergens; Protoperidinium divergens, biomass; Protoperidinium granii; Protoperidinium granii, biomass; Protoperidinium pellucidum; Protoperidinium pellucidum, biomass; Protoperidinium pentagonum; Protoperidinium pentagonum, biomass; Protoperidinium quarnerense; Protoperidinium quarnerense, biomass; Protoperidinium steinii; Protoperidinium steinii, biomass; Pseudo-nitzschia delicatissima; Pseudo-nitzschia delicatissima, biomass; Pseudosolenia calcar-avis; Pseudosolenia calcar-avis, biomass; Pterosperma cristatum; Pterosperma cristatum, biomass; Pterosperma sp.; Pterosperma sp., biomass; Ptychodiscus noctiluca; Ptychodiscus noctiluca, biomass; Pyrophacus horologicum; Pyrophacus horologicum, biomass; Pyrophacus horologicum var. steinii; Pyrophacus horologicum var. steinii, biomass; Sample comment; Sample ID; Scrippsiella trochoidea; Scrippsiella trochoidea, biomass; SESAME; Southern European Seas: Assessing and Modelling Ecosystem Changes; Station_201; Station_202; Station_203; Station_204; Station_300; Station_301; Station_302; Station_303; Station_304; Station_305; Thalassionema nitzschioides; Thalassionema nitzschioides, biomass; Thalassiosira eccentrica; Thalassiosira eccentrica, biomass; Thalassiosira nana; Thalassiosira nana, biomass; Thalassiosira parva; Thalassiosira parva, biomass; Thalassiosira sp.; Thalassiosira sp., biomass
    Type: Dataset
    Format: text/tab-separated-values, 7462 data points
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    DATA PANGAEA
  • 8
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    Abundance and biomass of phytoplankton in the western part of the Black Sea during Branimir Ormanov cruise BO092000 in September 2000 (2015)
    PANGAEA
    Details
    Publication Date: 2023-07-09
    Description: The samples were concentrated down to 50 cm**3 by slow decantation after storage for 20 days in a cool and dark place. The species identification was done under light microscope OLIMPUS–BS41 connected to a video-interactive image analysis system at magnification of the ocular 10X and objective – 40X. A Sedgwick-Rafter camera (1ml) was used for counting. 400 specimen were counted for each sample, while rare and large species were checked in the whole sample (Manual of phytoplankton, 2005). Species identification was mainly after Carmelo T. (1997) and Fukuyo, Y. (2000). Taxon-specific phytoplankton abundance and biomass were analysed by Moncheva S., B. Parr, 2005. Manual for Phytoplankton Sampling and Analysis in the Black Sea. The cell biovolume was determined based on morpho-metric measurement of phytoplankton units and the corresponding geometric shapes as described in detail in (Edier, 1979).
    Keywords: Acanthoica quattrospina; Acanthoica quattrospina, biomass; Acanthoica sp.; Acanthoica sp., biomass; Achradina sulcata; Achradina sulcata, biomass; Admiral Br. Ormanov; Amphidoma spinosa; Amphidoma spinosa, biomass; Amphiprora paludosa; Amphiprora paludosa, biomass; Amphora hyalina; Amphora hyalina, biomass; Black Sea; BO092000; BO092000_101_1192000; BO092000_102_1192000; BO092000_201_1192000; BO092000_202_1292000; BO092000_203_1292000; BO092000_204_1292000; BO092000_205_1292000; BO092000_206_1292000; BO092000_300_1192000; BO092000_301_1292000; BO092000_302_1292000; BO092000_303_1292000; BO092000_304_1292000; BO092000_305_1292000; BO092000_306_1292000; BO092000_308_1292000; BO092000_401_1292000; BO092000_402_1392000; BO092000_409_1392000; BO092000_500_1492000; BO092000_501_1492000; BO092000_502_1492000; BO092000_504_1492000; BO092000_506_1392000; BO092000_509_1392000; BO092000_600_1492000; BO092000_601_1492000; BO092000_604_1492000; BO092000_606_1492000; Bottle, Niskin; Calcidiscus leptoporus; Calcidiscus leptoporus, biomass; Calciosolenia granii var. cylindrothecaeformis; Calciosolenia granii var. cylindrothecaeformis, biomass; Calyptrosphaera globosa; Calyptrosphaera globosa, biomass; Calyptrosphaera sp.; Calyptrosphaera sp., biomass; Cerataulina pelagica; Cerataulina pelagica, biomass; Ceratium furca; Ceratium furca, biomass; Ceratium fusus; Ceratium fusus, biomass; Ceratium minutum; Ceratium minutum, biomass; Ceratium tripos; Ceratium tripos, biomass; Ceratium tripos var. atlanticum; Ceratium tripos var. atlanticum, biomass; Chaetoceros affinis; Chaetoceros affinis, biomass; Chaetoceros affinis var. willei; Chaetoceros affinis var. willei, biomass; Chaetoceros curvisetus; Chaetoceros curvisetus, biomass; Chaetoceros laciniosus; Chaetoceros laciniosus, biomass; Chaetoceros lorenzianus; Chaetoceros lorenzianus, biomass; Chaetoceros rigidus; Chaetoceros rigidus, biomass; Chaetoceros sp.; Chaetoceros sp., biomass; Coccolithinae sp.; Coccolithinae sp., biomass; Coccolithus pelagicus; Coccolithus pelagicus, biomass; Coccolithus sp.; Coccolithus sp., biomass; Cochlodinium archimedes; Cochlodinium archimedes, biomass; Cochlodinium citron; Cochlodinium citron, biomass; Cochlodinium schuettii; Cochlodinium schuettii, biomass; Cochlodinium sp.; Cochlodinium sp., biomass; Computed/Converted; Coscinodiscus granii; Coscinodiscus granii, biomass; Counting; Cylindrotheca closterium; Cylindrotheca closterium, biomass; Dactyliosolen fragilissimus; Dactyliosolen fragilissimus, biomass; Date/Time of event; DEPTH, water; Dictyocha octonaria; Dictyocha octonaria, biomass; Dinophyceae; Dinophyceae, biomass; Dinophyceae, cyst, biomass; Dinophysis acuminata; Dinophysis acuminata, biomass; Dinophysis acuta; Dinophysis acuta, biomass; Dinophysis caudata; Dinophysis caudata, biomass; Dinophysis fortii; Dinophysis fortii, biomass; Dinophysis sacculus; Dinophysis sacculus, biomass; Dinophysis sp.; Dinophysis sp., biomass; Diplopsalis lenticula; Diplopsalis lenticula, biomass; Ebria tripartita; Ebria tripartita, biomass; Emiliania huxleyi; Emiliania huxleyi, biomass; Eucampia cornuta; Eucampia cornuta, biomass; Eutreptia lanowii; Eutreptia lanowii, biomass; Event label; Flagellates; Flagellates, biomass; Glenodinium paululum; Glenodinium paululum, biomass; Glenodinium sp.; Glenodinium sp., biomass; Gonyaulax apiculata; Gonyaulax apiculata, biomass; Gonyaulax catenata; Gonyaulax catenata, biomass; Gonyaulax diegensis; Gonyaulax diegensis, biomass; Gonyaulax digitale; Gonyaulax digitale, biomass; Gonyaulax grindleyi; Gonyaulax grindleyi, biomass; Gonyaulax polygramma; Gonyaulax polygramma, biomass; Gonyaulax sp.; Gonyaulax sp., biomass; Gonyaulax spinifera; Gonyaulax spinifera, biomass; Gymnodinium heterostriatum; Gymnodinium heterostriatum, biomass; Gymnodinium sanguineum; Gymnodinium sanguineum, biomass; Gymnodinium simplex; Gymnodinium simplex, biomass; Gymnodinium sp.; Gymnodinium sp., biomass; Gyrodinium caudatum; Gyrodinium caudatum, biomass; Gyrodinium fusiforme; Gyrodinium fusiforme, biomass; Gyrodinium lachryma; Gyrodinium lachryma, biomass; Gyrodinium longum; Gyrodinium longum, biomass; Gyrodinium pingue; Gyrodinium pingue, biomass; Gyrodinium sp.; Gyrodinium sp., biomass; Gyrodinium spirale; Gyrodinium spirale, biomass; Gyrodinium wulffii; Gyrodinium wulffii, biomass; Helladosphaera cornifera; Helladosphaera cornifera, biomass; Hermesinum adriaticum; Hermesinum adriaticum, biomass; Heterocapsa triquetra; Heterocapsa triquetra, biomass; Hillea fusiformis; Hillea fusiformis, biomass; Latitude of event; Leptocylindrus danicus; Leptocylindrus danicus, biomass; Leptocylindrus minimus; Leptocylindrus minimus, biomass; Lingulodinium polyedrum; Lingulodinium polyedrum, biomass; Longitude of event; Measured/Determined; Melosira nummuloides; Melosira nummuloides, biomass; Navicula cancellata; Navicula cancellata, biomass; NIS; Nitzschia longissima; Nitzschia longissima, biomass; Nitzschia sp.; Nitzschia sp., biomass; Nitzschia tenuirostris; Nitzschia tenuirostris, biomass; Oblea rotunda; Oblea rotunda, biomass; Olive-green; Olive-green, biomass; Oscillatoria sp.; Oscillatoria sp., biomass; Pennata sp.; Pennata sp., biomass; Peridinium brochii; Peridinium brochii, biomass; Peridinium globulus var. quarnerense; Peridinium globulus var. quarnerense, biomass; Peridinium minusculum; Peridinium minusculum, biomass; Peridinium pedunculatum; Peridinium pedunculatum, biomass; Peridinium sp.; Peridinium sp., biomass; Peridinium spiniferum; Peridinium spiniferum, biomass; Phalacroma pulchellum; Phalacroma pulchellum, biomass; Phalacroma rotundatum; Phalacroma rotundatum, biomass; Pheopolykrikos hartmannii; Pheopolykrikos hartmannii, biomass; Phytoplankton; Phytoplankton, total, biomass; Pleurosigma elongatum; Pleurosigma elongatum, biomass; Podolampas bipes; Podolampas bipes, biomass; Polykrikos kofoidii; Polykrikos kofoidii, biomass; Polykrikos schwarzii; Polykrikos schwarzii, biomass; Pontosphaera nigra; Pontosphaera nigra, biomass; Pontosphaera pulchra; Pontosphaera pulchra, biomass; Pontosphaera stagnicola; Pontosphaera stagnicola, biomass; Pontosphaera syracusana; Pontosphaera syracusana, biomass; Poropila dubia; Poropila dubia, biomass; Proboscia alata; Proboscia alata, biomass; Pronoctiluca acuta; Pronoctiluca acuta, biomass; Pronoctiluca pelagica; Pronoctiluca pelagica, biomass; Pronoctiluca spinifera; Pronoctiluca spinifera, biomass; Prorocentrum compressum; Prorocentrum compressum, biomass; Prorocentrum cordatum; Prorocentrum cordatum, biomass; Prorocentrum gracile; Prorocentrum gracile, biomass; Prorocentrum marinum; Prorocentrum marinum, biomass; Prorocentrum micans; Prorocentrum micans, biomass; Prorocentrum triestinum; Prorocentrum triestinum, biomass; Protoperidinium achromaticum; Protoperidinium achromaticum, biomass; Protoperidinium brevipes; Protoperidinium brevipes, biomass; Protoperidinium claudicans; Protoperidinium claudicans, biomass; Protoperidinium conicum; Protoperidinium conicum, biomass; Protoperidinium crassipes; Protoperidinium crassipes, biomass; Protoperidinium depressum; Protoperidinium depressum, biomass; Protoperidinium divergens; Protoperidinium divergens, biomass; Protoperidinium granii; Protoperidinium granii, biomass; Protoperidinium mite; Protoperidinium mite, biomass; Protoperidinium pellucidum; Protoperidinium pellucidum, biomass; Protoperidinium pentagonum; Protoperidinium pentagonum, biomass; Protoperidinium quarnerense; Protoperidinium quarnerense, biomass; Protoperidinium sp.; Protoperidinium sp., biomass; Protoperidinium steinii; Protoperidinium steinii, biomass; Protoperidinium subinerme; Protoperidinium subinerme, biomass; Pseudo-nitzschia delicatissima; Pseudo-nitzschia delicatissima, biomass; Pseudo-nitzschia pungens; Pseudo-nitzschia pungens, biomass; Pseudo-nitzschia seriata forma seriata; Pseudo-nitzschia seriata forma seriata, biomass; Pseudosolenia calcar-avis; Pseudosolenia calcar-avis, biomass; Pterosperma cristatum; Pterosperma
    Type: Dataset
    Format: text/tab-separated-values, 41627 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 9
    facet.materialart.
    Unknown
    Abundance and biomass of phytoplankton in the western part of the Black Sea during Parshin cruise BSRP in September and October 2005 (2015)
    PANGAEA
    Details
    Publication Date: 2023-07-09
    Description: The dataset is composed of 61 samples from 15 stations. The phytoplankton samples were collected by 5l Niskin bottles attached to the CTD system. The sampling depths were selected according to the CTD profile and the in situ fluorometer readings: surface, temperature, salinity and fluorescence gradients and 1 m above the bottom. At some stations phytoplankton net samples (20 µm mesh-size) were collected to assist species biodiversity examination. The samples (1l sea water) were preserved in 4% buffered to pH 8-8.2 with disodiumtetraborate formaldehyde solution and stored in plastic containers. On board at each station few live samples were qualitatively examined under microscope for preliminary analysis of taxonomic composition and dominant species. Taxon-specific phytoplankton abundance were concentrated down to 50 cm**3 by slow decantation after storage for 20 days in a cool and dark place. The species identification was done under light microscope OLIMPUS–BS41 connected to a video-interactive image analysis system at magnification of the ocular 10X and objective – 40X. A Sedgwick-Rafter camera (1ml) was used for counting. 400 specimen were counted for each sample, while rare and large species were checked in the whole sample (Manual of phytoplankton, 2005). Species identification was mainly after Carmelo T. (1997) and Fukuyo, Y. (2000). The cell biovolume of the taxon-specific phytoplankton biomass was determined based on morpho-metric measurement of phytoplankton units and the corresponding geometric shapes as described in detail in (Edier, 1979).
    Keywords: Alexandrium monilatum; Alexandrium monilatum, biomass; Alexandrium sp.; Alexandrium sp., biomass; Alexandrium tamarense; Alexandrium tamarense, biomass; Apedinella spinifera; Apedinella spinifera, biomass; Black Sea; Bottle, Niskin; BSRP2_Leg1_PIMS30651; Cerataulina pelagica; Cerataulina pelagica, biomass; Ceratium furca; Ceratium furca, biomass; Ceratium fusus; Ceratium fusus, biomass; Ceratium tripos; Ceratium tripos, biomass; Chaetoceros affinis; Chaetoceros affinis, biomass; Chaetoceros curvisetus; Chaetoceros curvisetus, biomass; Chaetoceros danicus; Chaetoceros danicus, biomass; Chaetoceros decipiens; Chaetoceros decipiens, biomass; Chaetoceros socialis; Chaetoceros socialis, biomass; Chaetoceros socialis forma autumnalis; Chaetoceros socialis forma autumnalis, biomass; Chroomonas sp.; Chroomonas sp., biomass; Coccolithus sp.; Coccolithus sp., biomass; Computed/Converted; Coscinodiscus granii; Coscinodiscus granii, biomass; Coscinodiscus sp.; Coscinodiscus sp., biomass; Counting; Cyclotella caspia; Cyclotella caspia, biomass; Cylindrotheca closterium; Cylindrotheca closterium, biomass; Dactyliosolen fragilissimus; Dactyliosolen fragilissimus, biomass; Date/Time of event; DEPTH, water; Detonula pumila; Detonula pumila, biomass; Dictyocha octonaria; Dictyocha octonaria, biomass; Dictyocha speculum; Dictyocha speculum, biomass; Dinophyceae; Dinophyceae, cyst, biomass; Dinophysis acuminata; Dinophysis acuminata, biomass; Dinophysis acuta; Dinophysis acuta, biomass; Dinophysis caudata; Dinophysis caudata, biomass; Dinophysis diegensis; Dinophysis diegensis, biomass; Diplopsalis lenticula; Diplopsalis lenticula, biomass; Ditylum brightwellii; Ditylum brightwellii, biomass; Emiliania huxleyi; Emiliania huxleyi, biomass; Euglena viridis; Euglena viridis, biomass; Eutreptia lanowii; Eutreptia lanowii, biomass; Event label; Flagellates; Flagellates, biomass; Gonyaulax spinifera; Gonyaulax spinifera, biomass; Gymnodinium agiliforme; Gymnodinium agiliforme, biomass; Gymnodinium fungiforme; Gymnodinium fungiforme, biomass; Gymnodinium sanguineum; Gymnodinium sanguineum, biomass; Gymnodinium sp.; Gymnodinium sp., biomass; Gymnodinium uberrimum; Gymnodinium uberrimum, biomass; Gyrodinium cornutum; Gyrodinium cornutum, biomass; Gyrodinium lachryma; Gyrodinium lachryma, biomass; Gyrodinium spirale; Gyrodinium spirale, biomass; Hemiselmis sp.; Hemiselmis sp., biomass; Heterocapsa triquetra; Heterocapsa triquetra, biomass; Hillea fusiformis; Hillea fusiformis, biomass; Katodinium fungiforme; Katodinium fungiforme, biomass; Latitude of event; Lingulodinium polyedrum; Lingulodinium polyedrum, biomass; Longitude of event; Measured/Determined; Melosira moniliformis; Melosira moniliformis, biomass; Melosira moniliformis var. subglobosa; Melosira moniliformis var. subglobosa, biomass; NIS; Nitzschia longissima; Nitzschia longissima, biomass; Optional event label; P1BT60; P1KR053; P1TR50; P1VA037; P2KR37; P2TR70; P2VA038; P3TR70; P3VA024; P4KR60; P4TR100; P4VA070; P5KR63; P6KR090; P7KR100; Peridinium conicum; Phalacroma rotundatum; Phalacroma rotundatum, biomass; Phytoplankton; Phytoplankton, total, biomass; Pleurosigma elongatum; Pleurosigma elongatum, biomass; Polykrikos schwarzii; Polykrikos schwarzii, biomass; Prorocentrum compressum; Prorocentrum compressum, biomass; Prorocentrum micans; Prorocentrum micans, biomass; Prorocentrum minimum; Prorocentrum minimum, biomass; Protoperidinium brevipes; Protoperidinium brevipes, biomass; Protoperidinium compressum; Protoperidinium compressum, biomass; Protoperidinium conicum; Protoperidinium conicum, biomass; Protoperidinium depressum; Protoperidinium depressum, biomass; Protoperidinium divergens; Protoperidinium divergens, biomass; Protoperidinium excentricum; Protoperidinium excentricum, biomass; Protoperidinium pallidum; Protoperidinium pallidum, biomass; Protoperidinium pellucidum; Protoperidinium pellucidum, biomass; Protoperidinium steinii; Protoperidinium steinii, biomass; Protoperidinium subinerme; Protoperidinium subinerme, biomass; Pseudo-nitzschia delicatissima; Pseudo-nitzschia delicatissima, biomass; Pseudo-nitzschia seriata; Pseudo-nitzschia seriata, biomass; Pseudosolenia calcar-avis; Pseudosolenia calcar-avis, biomass; Scrippsiella trochoidea; Scrippsiella trochoidea, biomass; SESAME; Skeletonema costatum; Skeletonema costatum, biomass; Southern European Seas: Assessing and Modelling Ecosystem Changes; Thalassionema nitzschioides; Thalassionema nitzschioides, biomass; Thalassiosira eccentrica; Thalassiosira eccentrica, biomass; Thalassiosira parva; Thalassiosira parva, biomass; Vladimir Parshin
    Type: Dataset
    Format: text/tab-separated-values, 9516 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 10
    facet.materialart.
    Unknown
    Abundance and biomass of phytoplankton in the western part of the Black Sea during Branimir Ormanov cruise BO091999 in September 1999 (2015)
    PANGAEA
    Details
    Publication Date: 2023-07-09
    Description: The samples were concentrated down to 50 cm**3 by slow decantation after storage for 20 days in a cool and dark place. The species identification was done under light microscope OLIMPUS-BS41 connected to a video-interactive image analysis system at magnification of the ocular 10X and objective - 40X. A Sedgwick-Rafter camera (1ml) was used for counting. 400 specimen were counted for each sample, while rare and large species were checked in the whole sample (Manual of phytoplankton, 2005). Species identification was mainly after Carmelo T. (1997) and Fukuyo, Y. (2000). Total phytoplankton abundance was calculated as sum of taxon-specific abundances. The cell biovolume was determined based on morpho-metric measurement of phytoplankton units and the corresponding geometric shapes as described in detail in (Edier, 1979). Total phytoplankton biomass was calculated as sum of taxon-specific biomasses.
    Keywords: Admiral Br. Ormanov; Amphora hyalina; Amphora hyalina, biomass; Black Sea; BO091999; BO091999_201_2191999; BO091999_201_2291999; BO091999_202_2191999; BO091999_205_2291999; BO091999_206_2291999; BO091999_300_2091999; BO091999_301_2391999; BO091999_303_2391999; BO091999_304_2291999; BO091999_305_2291999; BO091999_308_2291999; BO091999_401_2391999; Bottle, Niskin; Cerataulina pelagica; Cerataulina pelagica, biomass; Ceratium furca; Ceratium furca, biomass; Ceratium furca var. eugrammum; Ceratium furca var. eugrammum, biomass; Ceratium fusus; Ceratium fusus, biomass; Ceratium tripos; Ceratium tripos, biomass; Ceratium tripos var. atlanticum; Ceratium tripos var. atlanticum, biomass; Chaetoceros affinis; Chaetoceros affinis, biomass; Chaetoceros affinis var. willei; Chaetoceros affinis var. willei, biomass; Chaetoceros compressus; Chaetoceros compressus, biomass; Chaetoceros curvisetus; Chaetoceros curvisetus, biomass; Chaetoceros insignis; Chaetoceros insignis, biomass; Chaetoceros scabrosus; Chaetoceros scabrosus, biomass; Chaetoceros sp.; Chaetoceros sp., biomass; Chaetoceros sp., biomass, spores; Chaetoceros sp., spores; Chlorophyta sp.; Chlorophyta sp., biomass; Coccolithus pelagicus; Coccolithus pelagicus, biomass; Coccolithus sp.; Coccolithus sp., biomass; Cocconeis sp.; Cocconeis sp., biomass; Computed/Converted; Coscinodiscus janischii; Coscinodiscus janischii, biomass; Counting; Cyanobacteria, biomass; Cyanophyceae; Cyanophyceae, biomass; Cyclotella caspia; Cyclotella caspia, biomass; Cylindrotheca closterium; Cylindrotheca closterium, biomass; Dactyliosolen fragilissimus; Dactyliosolen fragilissimus, biomass; DEPTH, water; Dictyocha speculum; Dictyocha speculum, biomass; Dinophyceae; Dinophyceae, biomass; Dinophysis acuminata; Dinophysis acuminata, biomass; Dinophysis acuta; Dinophysis acuta, biomass; Dinophysis caudata; Dinophysis caudata, biomass; Dinophysis dens; Dinophysis dens, biomass; Dinophysis hastata; Dinophysis hastata, biomass; Dinophysis sacculus; Dinophysis sacculus, biomass; Dinophysis sp.; Dinophysis sp., biomass; Diplopsalis lenticula; Diplopsalis lenticula, biomass; Ditylum brightwellii; Ditylum brightwellii, biomass; Ebria tripartita; Ebria tripartita, biomass; Emiliania huxleyi; Emiliania huxleyi, biomass; Euglena sp.; Euglena sp., biomass; Euglenophyceae; Euglenophyceae, biomass; Eutreptia sp.; Eutreptia sp., biomass; Event label; Flagellates; Flagellates, biomass; Glenodinium paululum; Glenodinium paululum, biomass; Glenodinium sp.; Glenodinium sp., biomass; Gonyaulax catenata; Gonyaulax catenata, biomass; Gonyaulax digitale; Gonyaulax digitale, biomass; Gonyaulax grindleyi; Gonyaulax grindleyi, biomass; Gonyaulax polygramma; Gonyaulax polygramma, biomass; Gonyaulax sp.; Gonyaulax sp., biomass; Gonyaulax spinifera; Gonyaulax spinifera, biomass; Gymnodiniaceae; Gymnodiniaceae, biomass; Gymnodinium sanguineum; Gymnodinium sanguineum, biomass; Gymnodinium sp.; Gymnodinium sp., biomass; Gyrodinium fusiforme; Gyrodinium fusiforme, biomass; Gyrodinium lachryma; Gyrodinium lachryma, biomass; Gyrodinium sp.; Gyrodinium sp., biomass; Helladosphaera cornifera; Helladosphaera cornifera, biomass; Hermesinum adriaticum; Hermesinum adriaticum, biomass; Heterocapsa triquetra; Heterocapsa triquetra, biomass; Hillea fusiformis; Hillea fusiformis, biomass; Lingulodinium polyedrum; Lingulodinium polyedrum, biomass; Measured/Determined; NIS; Nitzschia tenuirostris; Nitzschia tenuirostris, biomass; Oscillatoria sp.; Oscillatoria sp., biomass; Pennata sp.; Pennata sp., biomass; Peridinium granii; Peridinium granii forma mite, biomass; Peridinium knipowitschii; Peridinium knipowitschii, biomass; Peridinium minusculum; Peridinium minusculum, biomass; Peridinium pedunculatum; Peridinium pedunculatum, biomass; Peridinium sp.; Peridinium sp., biomass; Phalacroma rotundatum; Phalacroma rotundatum, biomass; Phytoplankton; Phytoplankton, total, biomass; Pleurosigma elongatum; Pleurosigma elongatum, biomass; Polykrikos schwarzii; Polykrikos schwarzii, biomass; Pontosphaera echinofera; Pontosphaera echinofera, biomass; Pontosphaera nigra; Pontosphaera nigra, biomass; Proboscia alata; Proboscia alata, biomass; Pronoctiluca pelagica; Pronoctiluca pelagica, biomass; Prorocentrum compressum; Prorocentrum compressum, biomass; Prorocentrum cordatum; Prorocentrum cordatum, biomass; Prorocentrum gracile; Prorocentrum gracile, biomass; Prorocentrum marinum; Prorocentrum marinum, biomass; Prorocentrum micans; Prorocentrum micans, biomass; Prorocentrum triestinum; Prorocentrum triestinum, biomass; Protoperidinium claudicans; Protoperidinium claudicans, biomass; Protoperidinium conicoides; Protoperidinium conicoides, biomass; Protoperidinium conicum; Protoperidinium conicum, biomass; Protoperidinium crassipes; Protoperidinium crassipes, biomass; Protoperidinium depressum; Protoperidinium depressum, biomass; Protoperidinium divergens; Protoperidinium divergens, biomass; Protoperidinium granii; Protoperidinium granii, biomass; Protoperidinium pellucidum; Protoperidinium pellucidum, biomass; Protoperidinium quarnerense; Protoperidinium quarnerense, biomass; Protoperidinium steinii; Protoperidinium steinii, biomass; Pseudo-nitzschia delicatissima; Pseudo-nitzschia delicatissima, biomass; Pseudo-nitzschia seriata forma seriata; Pseudo-nitzschia seriata forma seriata, biomass; Pseudosolenia calcar-avis; Pseudosolenia calcar-avis, biomass; Pterosperma cristatum; Pterosperma cristatum, biomass; Pterosperma jorgensii; Pterosperma jorgensii, biomass; Ptychodiscus noctiluca; Ptychodiscus noctiluca, biomass; Sample comment; Scrippsiella trochoidea; Scrippsiella trochoidea, biomass; Skeletonema costatum; Skeletonema costatum, biomass; Station_201; Station_202; Station_205; Station_206; Station_300; Station_301; Station_303; Station_304; Station_305; Station_308; Station_401; Syracosphaera quadricornu; Syracosphaera quadricornu, biomass; Thalassionema nitzschioides; Thalassionema nitzschioides, biomass; Thalassiosira eccentrica; Thalassiosira eccentrica, biomass; Thalassiosira sp.; Thalassiosira sp., biomass
    Type: Dataset
    Format: text/tab-separated-values, 9900 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
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