GLORIA

GEOMAR Library Ocean Research Information Access

feed icon rss

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
Filter
  • 2010-2014  (15)
  • 1990-1994  (3)
Document type
Keywords
Years
Year
  • 1
    ISSN: 1432-072X
    Keywords: Formylmethanofuran dehydrogenase ; Tungsten enzymes ; Molybdopterin dinucleotides ; Methanogenesis ; Archaea ; Archaebacteria ; Methanobacterium thermoautotrophicum ; Methanobacterium wolfei
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Methanobacterium thermoautotrophicum (strain Marburg) was found to grow on media supplemented with tungstate rather than with molybdate. The Archaeon then synthesized a tungsten iron-sulfur isoenzyme of formylmethanofuran dehydrogenase. The isoenzyme was purified to apparent homogeneity and shown to be composed of four different subunits of apparent molecular masses 65 kDa, 53 kDa, 31 kDa, and 15 kDa and to contain per mol 0.4 mol tungsten, 〈0.05 mol molybdenum, 8 mol non-heme iron, 8 mol acid-labile sulfur and molybdopterin guanine dinucleotide. Its molecular and catalytic properties were significantly different from those of the molybdenum isoenzyme characterized previously. The two isoenzymes also differed in their metal specificity: the active molybdenum isoenzyme was only synthesized when molybdenum was available during growth whereas the active tungsten isoenzyme was also generated during growth of the cells on molybdate medium. Under the latter conditions the tungsten isoenzyme was synthesized containing molybdenum rather than tungsten.
    Type of Medium: Electronic Resource
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    ISSN: 1432-072X
    Keywords: Key words: Formylmethanofuran dehydrogenase – Tungsten enzymes – Molybdopterin dinucleotides – Methanogenesis – Archaea – Archaebacteria –Methanobacterium thermoautotrophicum–Methanobacterium wolfei
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract. Methanobacterium thermoautotrophicum (strain Marburg) was found to grow on media supplemented with tungstate rather than with molybdate. The Archaeon then synthesized a tungsten iron-sulfur isoenzyme of formylmethanofuran dehydrogenase. The isoenzyme was purified to apparent homogeneity and shown to be composed of four different subunits of apparent molecular masses 65 kDa, 53 kDa, 31 kDa, and 15 kDa and to contain per mol 0.4 mol tungsten, 〈0.05 mol molybdenum, 8 mol non-heme iron, 8 mol acid-labile sulfur and molybdopterin guanine dinucleotide. Its molecular and catalytic properties were significantly different from those of the molybdenum isoenzyme characterized previously. The two isoenzymes also differed in their metal specificity: the active molybdenum isoenzyme was only synthesized when molybdenum was available during growth whereas the active tungsten isoenzyme was also generated during growth of the cells on molybdate medium. Under the latter conditions the tungsten isoenzyme was synthesized containing molybdenum rather than tungsten.
    Type of Medium: Electronic Resource
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    ISSN: 1432-072X
    Keywords: Tungsten enzymes ; Molybdenum enzymes ; Formylmethanofuran dehydrogenase ; Methanogenic Archaea ; Methanosarcina barkeri ; Methanobacterium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cell extracts of Methanosarcina barkeri grown on methanol in media supplemented with molybdate exhibited a specific activity of formylmethanofuran dehydrogenase of approximately 1 U (1 μmol/min)/mg protein. When the growth medium was supplemented with tungstate rather than with molybdate, the specific activity was only 0.04 U/mg. Despite this reduction in specific activity growth on methanol was not inhibited. An inhibition of both growth and synthesis of active formylmethanofuran dehydrogenase was observed, however, when H2 and CO2 were the energy substrates. The results indicate that, in contrast to Methanobacterium wolfei and Methanobacterium thermoautotrophicum, M. barkeri possesses only a molybdenum containing formylmethanofuran dehydrogenase and not in addition a tungsten isoenzyme.
    Type of Medium: Electronic Resource
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Löscher, Carolin R; Großkopf, Tobias; Desai, Falguni; Gill, Diana; Schunck, Harald; Croot, Peter L; Schlosser, Christian; Neulinger, Sven C; Pinnow, Nicole; Lavik, Gaute; Kuypers, Marcel MM; LaRoche, Julie; Schmitz, Ruth A (2014): Facets of diazotrophy in the oxygen minimum zone waters off Peru. The ISME Journal, https://doi.org/10.1038/ismej.2014.71
    Publication Date: 2023-10-28
    Description: Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4+), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2- and PO43- are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the futur
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754
    Type: Dataset
    Format: application/zip, 3 datasets
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 5
    Publication Date: 2023-10-28
    Keywords: Bacterial nitrogen fixation, cluster; Bacterial nitrogen fixation, cluster, standard deviation; Bacterial nitrogen fixation, total; Climate - Biogeochemistry Interactions in the Tropical Ocean; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Latitude of event; Longitude of event; M77/3; M77/3-CTD109; M77/3-CTD110; M77/3-CTD13; M77/3-CTD14; M77/3-CTD15; M77/3-CTD17; M77/3-CTD19; M77/3-CTD21; M77/3-CTD24; M77/3-CTD25; M77/3-CTD4; M77/3-CTD55; M77/3-CTD57; M77/3-CTD58; M77/3-CTD59; M77/3-CTD6; M77/3-CTD60; M77/3-CTD62; M77/3-CTD63; M77/3-CTD67; M77/3-CTD7; M77/3-CTD70; M77/3-CTD71; Meteor (1986); Sample code/label; SFB754; Standard deviation; Station label
    Type: Dataset
    Format: text/tab-separated-values, 5138 data points
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 6
    Publication Date: 2023-10-28
    Keywords: Bacterial nitrogen fixation, cluster; Bacterial nitrogen fixation, cluster, standard deviation; Bacterial nitrogen fixation, total; Climate - Biogeochemistry Interactions in the Tropical Ocean; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Latitude of event; Longitude of event; M77/4; M77/4_143; M77/4_152; M77/4_160; M77/4-CTD14; M77/4-CTD18; M77/4-CTD23; M77/4-CTD24; M77/4-CTD29; M77/4-CTD34; M77/4-CTD38; M77/4-CTD39; M77/4-CTD40; M77/4-CTD58; M77/4-CTD68; M77/4-CTD73; M77/4-CTD75; M77/4-CTD79; M77/4-CTD81; M77/4-CTD82; M77/4-CTD90; Meteor (1986); Sample code/label; SFB754; Standard deviation; Station label
    Type: Dataset
    Format: text/tab-separated-values, 1674 data points
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 7
    Publication Date: 2023-10-28
    Keywords: Archael_amoA, standard deviation; Archael_amoA distribution; Climate - Biogeochemistry Interactions in the Tropical Ocean; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Functional gene beta amoA; Functional gene beta amoA, standard deviation; Functional gene hzo; Functional gene hzo, standard deviation; Functional gene nirS; Functional gene nirS, standard deviation; Functional gene nrfA; Functional gene nrfA, standard deviation; Latitude of event; Longitude of event; M77/3; M77/3-CTD109; M77/3-CTD110; M77/3-CTD13; M77/3-CTD14; M77/3-CTD15; M77/3-CTD17; M77/3-CTD19; M77/3-CTD21; M77/3-CTD23; M77/3-CTD24; M77/3-CTD25; M77/3-CTD4; M77/3-CTD55; M77/3-CTD57; M77/3-CTD58; M77/3-CTD59; M77/3-CTD6; M77/3-CTD60; M77/3-CTD62; M77/3-CTD63; M77/3-CTD67; M77/3-CTD7; M77/3-CTD70; M77/3-CTD71; Meteor (1986); Sample code/label; SFB754; Station label
    Type: Dataset
    Format: text/tab-separated-values, 3820 data points
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 8
    Publication Date: 2017-03-09
    Description: Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4+), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2− and PO43− are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the futur
    Type: Article , PeerReviewed
    Format: text
    Format: text
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 9
    Publication Date: 2019-09-23
    Description: In Eastern Boundary Upwelling Systems nutrient-rich waters are transported to the ocean surface, fuelling high photoautotrophic primary production. Subsequent heterotrophic decomposition of the produced biomass increases the oxygen-depletion at intermediate water depths, which can result in the formation of oxygen minimum zones (OMZ). OMZs can sporadically accumulate hydrogen sulfide (H2S), which is toxic to most multicellular organisms and has been implicated in massive fish kills. During a cruise to the OMZ off Peru in January 2009 we found a sulfidic plume in continental shelf waters, covering an area 〉5500 km2, which contained ~2.2×104 tons of H2S. This was the first time that H2S was measured in the Peruvian OMZ and with ~440 km3 the largest plume ever reported for oceanic waters. We assessed the phylogenetic and functional diversity of the inhabiting microbial community by high-throughput sequencing of DNA and RNA, while its metabolic activity was determined with rate measurements of carbon fixation and nitrogen transformation processes. The waters were dominated by several distinct γ-, δ- and ε-proteobacterial taxa associated with either sulfur oxidation or sulfate reduction. Our results suggest that these chemolithoautotrophic bacteria utilized several oxidants (oxygen, nitrate, nitrite, nitric oxide and nitrous oxide) to detoxify the sulfidic waters well below the oxic surface. The chemolithoautotrophic activity at our sampling site led to high rates of dark carbon fixation. Assuming that these chemolithoautotrophic rates were maintained throughout the sulfidic waters, they could be representing as much as ~30% of the photoautotrophic carbon fixation. Postulated changes such as eutrophication and global warming, which lead to an expansion and intensification of OMZs, might also increase the frequency of sulfidic waters. We suggest that the chemolithoautotrophically fixed carbon may be involved in a negative feedback loop that could fuel further sulfate reduction and potentially stabilize the sulfidic OMZ waters
    Type: Article , PeerReviewed
    Format: text
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 10
    Publication Date: 2017-03-09
    Description: Biological dinitrogen fixation provides the largest input of nitrogen to the oceans, therefore exerting important control on the ocean’s nitrogen inventory and primary productivity. Nitrogen-isotope data fromocean sediments suggest that the marine-nitrogen inventory has been balanced for the past 3,000 years (ref. 4). Producing a balanced marine-nitrogenbudget based on direct measurements has proved difficult, however, with nitrogen loss exceeding the gain from dinitrogen fixation by approximately 200 TgNyr-1 (refs 5, 6). Here we present data from the Atlantic Ocean and show that the most widely used method of measuring oceanic N2-fixation rates underestimates the contribution of N2-fixing microorganisms (diazotrophs) relative to a newly developed method. Using molecular techniques to quantify the abundance of specific clades of diazotrophs in parallel with rates of 15N2 incorporation into particulate organic matter, we suggest that the difference between N2-fixation rates measured with the established method and those measured with the new method8 can be related to the composition of the diazotrophic community. Our data show that in areas dominated by Trichodesmium, the established method underestimatesN2-fixation rates by an averageof 62%. We also find that the newly developed method yields N2-fixation rates more than six times higher than those from the established method when unicellular, symbiotic cyanobacteria and c-proteobacteria dominate the diazotrophic community. On the basis of average areal rates measured over the Atlantic Ocean, we calculated basin-wide N2-fixation rates of 14+/-1TgNyr-1 and 24+/-1TgNyr-1 for the established and new methods, respectively. If our findings can be extrapolated to other ocean basins, this suggests that the global marine N2-fixation rate derived from direct measurements may increase from 103+/-8TgNyr-1 to 177+/-8TgNyr-1, and that the contribution of N2 fixers other than Trichodesmium is much more significant than was previously thought.
    Type: Article , PeerReviewed
    Format: text
    Format: text
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...