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  • 1
    In: Limnology and oceanography, Oxford [u.a.] : Wiley-Blackwell, 1956, 74(2008), 23, Seite 7272-7285, 1939-5590
    In: volume:74
    In: year:2008
    In: number:23
    In: pages:7272-7285
    Description / Table of Contents: The pseudocolonial coral Lophelia pertusa (Scleractinia, Caryophylliidae) is a eurybathic, stenothermal cosmopolitan cold-water species. It occurs in two color varieties, white and red. L. pertusa builds vast cold-water coral reefs along the continental margins, which are among the most diverse deep-sea habitats. Microbiology of L. pertusa has been in scientific focus for only a few years, but the question of whether the coral holds a host-specific bacterial community has not been finally answered. Bacteria on coral samples from the Trondheimsfjord (Norway) were characterized by the culture-independent 16S rRNA gene-based techniques terminal restriction fragment length polymorphism and sequence analysis. L. pertusa revealed a high microbial richness. Clone sequences were dominated by members of the Alpha- and Gammaproteobacteria. Other abundant taxa were Bacteroidetes, Actinobacteria, Verrucomicrobia, Firmicutes, and Planctomycetes. The bacterial community of L. pertusa not only differed conspicuously from that of the environment but also varied with both the location and color variety of its host. Therefore, the microbial colonization cannot be termed "specific" sensu stricto. However, similarities to other coral-bacterium associations suggest the existence of cold-water coral-specificʺ bacterial groups sensu lato. L. pertusa-associated bacteria appear to play a significant role in the nutrition of their host by degradation of sulfur compounds, cellulose, chitin, and end products of the coral's anaerobic metabolism. Some coral-associated microbes were regarded as opportunistic pathogens. Dominance of mixotrophic members of the Rhodobacteraceae in white L. pertusa could explain the wider dispersal of this phenotype by supplementary nutrition.
    Type of Medium: Online Resource
    Pages: graph. Darst
    ISSN: 1939-5590
    Language: English
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  • 2
    Publication Date: 2023-06-13
    Keywords: Alkalinity, total; Ammonium; BIOACID; Biological Impacts of Ocean Acidification; DATE/TIME; Mesocosm label; Nitrate; Nitrite; Nitrogen oxide; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Phosphate; Salinity; Sample code/label; Silicate; Temperature, water; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 1799 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Mensch, Birte; Neulinger, Sven C; Graiff, Angelika; Pansch, Christian; Künzel, Sven; Fischer, Martin A; Schmitz, Ruth A (2016): Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels. Frontiers in Microbiology, 7, https://doi.org/10.3389/fmicb.2016.00434
    Publication Date: 2023-06-13
    Description: Ocean acidification and warming effects on the macroalgal species Fucus vesiculosus forma mytili were simulated in the tidal benthic mesocosm facility at the AWI Wadden Sea Station on the island of Sylt, Germany (55°01'19.2''N, 8°26'17.7''E). The SY1 experiment in spring 2014 (11 weeks from early April to late June) was based on a "Temp X pCO2" full-factorial setup (ambient or delta 5°C temperature X ambient or 1000 ppm pCO2) resulting in 4 treatment levels à 3 replicates. The seawater parameters (temperature, pH, salinity, total alkalinity, pCO2) and seawater inorganic nutrient concentrations (silicate, nitrite, phosphate, ammonium, total nitrogen oxide, nitrate) were measured on a weekly basis. The biomass growth rates (RGR) of Fucus vesiculosus forma mytili were calculated over time, and its physiological parameters (carbon, nitrogen, CN ratio, mannitol) were measured at the beginning and end of the experiment.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 4
    Publication Date: 2023-06-13
    Keywords: BIOACID; Biological Impacts of Ocean Acidification; Carbon/Nitrogen ratio; Carbon biomass; DATE/TIME; Growth rate; Mannitol; Mesocosm label; Nitrogen in biomass; Sample code/label; Species; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 156 data points
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  • 5
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    Unknown
    PANGAEA
    In:  Supplement to: Löscher, Carolin R; Großkopf, Tobias; Desai, Falguni; Gill, Diana; Schunck, Harald; Croot, Peter L; Schlosser, Christian; Neulinger, Sven C; Pinnow, Nicole; Lavik, Gaute; Kuypers, Marcel MM; LaRoche, Julie; Schmitz, Ruth A (2014): Facets of diazotrophy in the oxygen minimum zone waters off Peru. The ISME Journal, https://doi.org/10.1038/ismej.2014.71
    Publication Date: 2023-10-28
    Description: Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4+), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2- and PO43- are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the futur
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 6
    Publication Date: 2023-10-28
    Keywords: Bacterial nitrogen fixation, cluster; Bacterial nitrogen fixation, cluster, standard deviation; Bacterial nitrogen fixation, total; Climate - Biogeochemistry Interactions in the Tropical Ocean; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Latitude of event; Longitude of event; M77/3; M77/3-CTD109; M77/3-CTD110; M77/3-CTD13; M77/3-CTD14; M77/3-CTD15; M77/3-CTD17; M77/3-CTD19; M77/3-CTD21; M77/3-CTD24; M77/3-CTD25; M77/3-CTD4; M77/3-CTD55; M77/3-CTD57; M77/3-CTD58; M77/3-CTD59; M77/3-CTD6; M77/3-CTD60; M77/3-CTD62; M77/3-CTD63; M77/3-CTD67; M77/3-CTD7; M77/3-CTD70; M77/3-CTD71; Meteor (1986); Sample code/label; SFB754; Standard deviation; Station label
    Type: Dataset
    Format: text/tab-separated-values, 5138 data points
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  • 7
    Publication Date: 2023-10-28
    Keywords: Bacterial nitrogen fixation, cluster; Bacterial nitrogen fixation, cluster, standard deviation; Bacterial nitrogen fixation, total; Climate - Biogeochemistry Interactions in the Tropical Ocean; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Latitude of event; Longitude of event; M77/4; M77/4_143; M77/4_152; M77/4_160; M77/4-CTD14; M77/4-CTD18; M77/4-CTD23; M77/4-CTD24; M77/4-CTD29; M77/4-CTD34; M77/4-CTD38; M77/4-CTD39; M77/4-CTD40; M77/4-CTD58; M77/4-CTD68; M77/4-CTD73; M77/4-CTD75; M77/4-CTD79; M77/4-CTD81; M77/4-CTD82; M77/4-CTD90; Meteor (1986); Sample code/label; SFB754; Standard deviation; Station label
    Type: Dataset
    Format: text/tab-separated-values, 1674 data points
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  • 8
    Publication Date: 2023-10-28
    Keywords: Archael_amoA, standard deviation; Archael_amoA distribution; Climate - Biogeochemistry Interactions in the Tropical Ocean; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Functional gene beta amoA; Functional gene beta amoA, standard deviation; Functional gene hzo; Functional gene hzo, standard deviation; Functional gene nirS; Functional gene nirS, standard deviation; Functional gene nrfA; Functional gene nrfA, standard deviation; Latitude of event; Longitude of event; M77/3; M77/3-CTD109; M77/3-CTD110; M77/3-CTD13; M77/3-CTD14; M77/3-CTD15; M77/3-CTD17; M77/3-CTD19; M77/3-CTD21; M77/3-CTD23; M77/3-CTD24; M77/3-CTD25; M77/3-CTD4; M77/3-CTD55; M77/3-CTD57; M77/3-CTD58; M77/3-CTD59; M77/3-CTD6; M77/3-CTD60; M77/3-CTD62; M77/3-CTD63; M77/3-CTD67; M77/3-CTD7; M77/3-CTD70; M77/3-CTD71; Meteor (1986); Sample code/label; SFB754; Station label
    Type: Dataset
    Format: text/tab-separated-values, 3820 data points
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  • 9
    Publication Date: 2017-06-15
    Description: Recent modeling results suggest that oceanic oxygen levels will decrease significantly over the next decades to centuries in response to climate change and altered ocean circulation. Hence, the future ocean may experience major shifts in nutrient cycling triggered by the expansion and intensification of tropical oxygen minimum zones (OMZs), which are connected to the most productive upwelling systems in the ocean. There are numerous feedbacks among oxygen concentrations, nutrient cycling and biological productivity; however, existing knowledge is insufficient to understand physical, chemical and biological interactions in order to adequately assess past and potential future changes. In the following, we summarize one decade of research performed in the framework of the Collaborative Research Center 754 (SFB754) focusing on climate–biogeochemistry interactions in tropical OMZs. We investigated the influence of low environmental oxygen conditions on biogeochemical cycles, organic matter formation and remineralization, greenhouse gas production and the ecology in OMZ regions of the eastern tropical South Pacific compared to the weaker OMZ of the eastern tropical North Atlantic. Based on our findings, a coupling of primary production and organic matter export via the nitrogen cycle is proposed, which may, however, be impacted by several additional factors, e.g., micronutrients, particles acting as microniches, vertical and horizontal transport of organic material and the role of zooplankton and viruses therein.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 10
    Publication Date: 2021-03-19
    Description: Two different photosystems for performing bacteriochlorophyll-mediated photosynthetic energy conversion are employed in different bacterial phyla. Those bacteria employing a photosystem II type of photosynthetic apparatus include the phototrophic purple bacteria (Proteobacteria), Gemmatimonas and Chloroflexus with their photosynthetic relatives. The proteins of the photosynthetic reaction center PufL and PufM are essential components and are common to all bacteria with a type-II photosynthetic apparatus, including the anaerobic as well as the aerobic phototrophic Proteobacteria. Therefore, PufL and PufM proteins and their genes are perfect tools to evaluate the phylogeny of the photosynthetic apparatus and to study the diversity of the bacteria employing this photosystem in nature. Almost complete pufLM gene sequences and the derived protein sequences from 152 type strains and 45 additional strains of phototrophic Proteobacteria employing photosystem II were compared. The results give interesting and comprehensive insights into the phylogeny of the photosynthetic apparatus and clearly define Chromatiales, Rhodobacterales, Sphingomonadales as major groups distinct from other Alphaproteobacteria, from Betaproteobacteria and from Caulobacterales (Brevundimonas subvibrioides). A special relationship exists between the PufLM sequences of those bacteria employing bacteriochlorophyll b instead of bacteriochlorophyll a. A clear phylogenetic association of aerobic phototrophic purple bacteria to anaerobic purple bacteria according to their PufLM sequences is demonstrated indicating multiple evolutionary lines from anaerobic to aerobic phototrophic purple bacteria. The impact of pufLM gene sequences for studies on the environmental diversity of phototrophic bacteria is discussed and the possibility of their identification on the species level in environmental samples is pointed out. © 2018 Imhoff, Rahn, Künzel and Neulinger.
    Type: Article , PeerReviewed
    Format: text
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