Description: Considerable effort is being deployed to predict the impacts of climate change and anthropogenic activities on the ocean's biophysical environment, biodiversity, and natural resources to better understand how marine ecosystems and provided services to humans are likely to change and explore alternative pathways and options. We present an updated version of EcoOcean (v2), a spatial-temporal ecosystem modeling complex of the global ocean that spans food-web dynamics from primary producers to top predators. Advancements include an enhanced ability to reproduce spatial-temporal ecosystem dynamics by linking species productivity, distributions, and trophic interactions to the impacts of climate change and worldwide fisheries. The updated modeling platform is used to simulate past and future scenarios of change, where we quantify the impacts of alternative configurations of the ecological model, responses to climate-change scenarios, and the additional impacts of fishing. Climate-change scenarios are obtained from two Earth-System Models (ESMs, GFDL-ESM2M, and IPSL-CMA5-LR) and two contrasting emission pathways (RCPs 2.6 and 8.5) for historical (1950-2005) and future (2006-2100) periods. Standardized ecological indicators and biomasses of selected species groups are used to compare simulations. Results show how future ecological trajectories are sensitive to alternative configurations of EcoOcean, and yield moderate differences when looking at ecological indicators and larger differences for biomasses of species groups. Ecological trajectories are also sensitive to environmental drivers from alternative ESM outputs and RCPs, and show spatial variability and more severe changes when IPSL and RCP 8.5 are used. Under a non-fishing configuration, larger organisms show decreasing trends, while smaller organisms show mixed or increasing results. Fishing intensifies the negative effects predicted by climate change, again stronger under IPSL and RCP 8.5, which results in stronger biomass declines for species already losing under climate change, or dampened positive impacts for those increasing. Several species groups that win under climate change become losers under combined impacts, while only a few (small benthopelagic fish and cephalopods) species are projected to show positive biomass changes under cumulative impacts. EcoOcean v2 can contribute to the quantification of cumulative impact assessments of multiple stressors and of plausible ocean-based solutions to prevent, mitigate and adapt to global change.

Description: The deep sea is among the largest, most biologically diverse, yet least-explored ecosystems on Earth. Baseline information on deep-sea biodiversity is crucial for understanding ecosystem functioning and for detecting community changes. Here, we established a baseline of cephalopod community composition and distribution off Cabo Verde, an archipelago in the eastern tropical Atlantic. This baseline served to test the hypothesis that Cabo Verde is biogeographically separated from other Macaronesian archipelagos and allowed the identification of cephalopod species which may play a role in the Macaronesian carbon cycle and oceanic food web. To investigate cephalopod community composition, this study used 746 individual cephalopods obtained by nets (0–1000 m) and 52 cephalopod encounters during video surveys with either towed camera (0–2500 m) or manned submersible (0–375 m). Additionally, environmental DNA (eDNA) metabarcoding on 105 seawater samples (50–2500 m), using an 18S rRNA universal cephalopod primer pair, and a species-specific primer pair for Taningia danae resulted in the detection of 32 cephalopod taxa. When combined, the three methods detected a total of 87 taxa, including 47 distinct species. Each method contributed between 7 and 54% of taxa that were not detected by the other methods, indicating that multiple methodological approaches are needed for optimal deep-sea cephalopod biodiversity assessments. This study documents the occurrences of six species and three genera for the first time in waters surrounding Cabo Verde. Video surveys and eDNA analysis detected Taningia danae recurrently (100–2500 m). eDNA metabarcoding proved to be a powerful tool for cephalopod biodiversity monitoring and complementary to traditional sampling methods. When also including literature records, Cabo Verde hosts at least 102 cephalopod taxa including 30 families and 64 benthic and pelagic species. The total number and species composition of Cabo Verde cephalopods is similar to the Canary Islands and Azores, two known cephalopod biodiversity hotspots, but the Cabo Verde octopus fauna seems to differ. Due to a range of life history characteristics, we hypothesize that the squids Taningia danae (Octopoteuthidae) and Sthenoteuthis pteropus (Ommastrephidae) are important in the carbon cycle of Macaronesia. As a cephalopod biodiversity hotspot Cabo Verde could function as a model region to investigate cephalopod biology and ecology in a rapidly changing Atlantic Ocean.

Description: The aim of this work is to present the food web models developed using the Ecopath with Ecosim (EwE) software tool to describe structure and functioning of various European marine ecosystems (eastern, central and western Mediterranean Sea; Black Sea; Bay of Biscay, Celtic Sea and Iberian coast; Baltic Sea; North Sea; English Channel, Irish Sea and west Scottish Sea; and Norwegian and Barents Seas). A total of 195 Ecopath models based on 168 scientific publications, which report original, updated and modified versions, were reviewed. Seventy models included Ecosim temporal simulations while 28 implemented Ecospace spatiotemporal dynamics. Most of the models and publications referred to the western Mediterranean Sea followed by the English Channel, Irish Sea and west Scottish Sea sub-regions. In the Mediterranean Sea, the western region had the largest number of models and publications, followed by the central and eastern regions; similar trends were observed in previous literature reviews. Most models addressed ecosystem functioning and fisheries-related hypotheses while several investigated the impact of climate change, the presence of alien species, aquaculture, chemical pollution, infrastructure, and energy production. Model complexity (i.e., number of functional groups) increased over time. Main forcing factors considered to run spatial and temporal simulations were trophic interactions, fishery, and primary production. Average scores of ecosystem indicators derived from the Ecopath summary statistics were compared. Uncertainty was also investigated based on the use of the Ecosampler plug-in and the Monte Carlo routine; only one third of the reviewed publications incorporated uncertainty analysis. Only a limited number of the models included the use of the ECOIND plug-in which provides the user with quantitative output of ecological indicators. We assert that the EwE modelling approach is a successful tool which provides a quantitative framework to analyse the structure and dynamics of ecosystems, and to evaluate the potential impacts of different management scenarios.

Description: 〈jats:p〉Human activities in coastal areas have intensified over the last 200 years, impacting also high-latitude regions such as the Baltic Sea. Benthic foraminifera, protists often with calcite shells (tests), are typically well preserved in marine sediments and known to record past bottom-water conditions. Morphological analyses of marine shells acquired by microcomputed tomography (µCT) have made significant progress toward a better understanding of recent environmental changes. However, limited access to data processing and a lack of guidelines persist when using open-source software adaptable to different microfossil shapes. This study provides a post-data routine to analyze the entire test parameters: average thickness, calcite volume, calcite surface area, number of pores, pore density, and calcite surface area/volume ratio. A case study was used to illustrate this method: 3D time series (i.e., 4D) of 〈jats:italic〉Elphidium clavatum〈/jats:italic〉 specimens recording environmental conditions in the Baltic Sea entrance from the period early industrial (the 1800s) to present-day (the 2010 s). Long-term morphological trends in the foraminiferal record revealed that modern specimens have ∼28% thinner tests and ∼91% more pores than their historic counterparts. However, morphological variability between specimens and the BFAR (specimens cm〈jats:sup〉−2〈/jats:sup〉 yr〈jats:sup〉−1〈/jats:sup〉) in 〈jats:italic〉E. clavatum〈/jats:italic〉 were not always synchronous. While the BFAR remained unchanged, morphological variability was linked to natural environmental fluctuations in the early industrial period and the consequences of anthropogenic climate change in the 21st century. During the period 1940–2000 s, the variations in BFAR were synchronous with morphological variability, revealing both the effects of the increase in human activities and major hydrographic changes. Finally, our interpretations, based on 〈jats:italic〉E. clavatum〈/jats:italic〉 morphological variations, highlight environmental changes in the Baltic Sea area, supporting those documented by the foraminiferal assemblages.〈/jats:p〉

Description: Maintaining healthy, productive ecosystems in the face of pervasive and accelerating human impacts including climate change requires globally coordinated and sustained observations of marine biodiversity. Global coordination is predicated on an understanding of the scope and capacity of existing monitoring programs, and the extent to which they use standardized, interoperable practices for data management. Global coordination also requires identification of gaps in spatial and ecosystem coverage, and how these gaps correspond to management priorities and information needs. We undertook such an assessment by conducting an audit and gap analysis from global databases and structured surveys of experts. Of 371 survey respondents, 203 active, long-term (〉5 years) observing programs systematically sampled marine life. These programs spanned about 7% of the ocean surface area, mostly concentrated in coastal regions of the United States, Canada, Europe, and Australia. Seagrasses, mangroves, hard corals, and macroalgae were sampled in 6% of the entire global coastal zone. Two-thirds of all observing programs offered accessible data, but methods and conditions for access were highly variable. Our assessment indicates that the global observing system is largely uncoordinated which results in a failure to deliver critical information required for informed decision-making such as, status and trends, for the conservation and sustainability of marine ecosystems and provision of ecosystem services. Based on our study, we suggest four key steps that can increase the sustainability, connectivity and spatial coverage of biological Essential Ocean Variables in the global ocean: (1) sustaining existing observing programs and encouraging coordination among these; (2) continuing to strive for data strategies that follow FAIR principles (findable, accessible, interoperable, and reusable); (3) utilizing existing ocean observing platforms and enhancing support to expand observing along coasts of developing countries, in deep ocean basins, and near the poles; and (4) targeting capacity building efforts. Following these suggestions could help create a coordinated marine biodiversity observing system enabling ecological forecasting and better planning for a sustainable use of ocean resources.

Description: Aquaculture is one of the fastest growing food production sectors and has great potential for food security and livelihoods. However, it generates concerning consequences for the environment, including chemical and biological pollution, disease outbreaks, unsustainable feeds and competition for coastal space. Recent investigations are focusing on sustainable techniques (e.g., polyculture, offshore facilities) to improve the relationship between the industry, environment and society. This review provides an overview of the main factors of ecological concern within marine finfish aquaculture, their interactions with the environment, and highlights sustainable alternatives that are currently in use or development. Adequate environmental monitoring and location of farms, the reduction and exploitation of wastes and chemicals being used is crucial to ensure the growth and continuity of aquaculture production.

Description: Plastic production and plastic waste have increased to such an extent that it has become globally ubiquitous. Recent research has highlighted that it has also invaded remote Polar Regions including the Arctic, where it is expected to accumulate over time due to transport from distant sources, rising local anthropogenic activities and increasing fragmentation of existing ocean plastics to microplastics (plastic items 〈5 mm). While a growing body of research has documented microplastics in the atmosphere, cryosphere, sea surface, water column, sediments and biota, contamination levels on Arctic beaches are poorly known. To fill this knowledge gap, we engaged citizen scientists participating in tourist cruises to sample beach sediments during shore visits on Svalbard, Norway. Following drying, sieving, and visual inspection of samples under a binocular microscope, putative plastic particles ≥1 mm were analysed by attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy. Plastic particles ≥1 mm were found in two out of 53 samples from 23 beaches (mean: 196.3 particles kg−1 and 147.4 particles L−1). These pollution levels could be due to our focus on plastic particles ≥1 mm as well as the relatively small sample sizes used during this initial phase of the project. In addition, the coarse substrate on most beaches might retain fewer plastic particles. The two samples with plastic particles ≥1 mm contained six polyester-epoxide particles and 4920 polypropylene fibres. The latter likely originated from a fishing net and points to possibly accelerated plastic fragmentation processes on Arctic beaches. Since fisheries-related debris is an important source of plastic on Svalbard, a build-up of microplastic quantities can be expected to burden Arctic ecosystems in addition to climate change unless efficient upstream action is taken to combat plastic pollution.

Description: Data on infauna and sediment characteristics were collected as part of an extensive research program on the effects of offshore wind turbines on the marine environment funded by the German Federal Maritime and Hydrographic Agency. The investigations were performed in the first German offshore wind farm alpha ventus in the German Bight (North Sea). The overall aim of the program was to evaluate the German national standard concept for environmental impact assessments for offshore wind farms. Specifically, our study addressed the potential changes of the infauna communities in different distances from single turbines in an early stage of the operational phase of the wind farm. The data were collected during the cruises HE296 (2008), HE313 (2009), HE340 (2010) and HE369 (2000) of the German research vessel RV Heincke. Infauna samples were taken with van Veen grab samples (sampling area: 0.1 m2, weight: 95 kg) inside the wind farm and in two reference sites outside the wind farm. Three replicate samples were taken at each station. The samples were sieved through a 1 mm mesh and species of the macro-infauna were determined to the lowest taxonomic level possible. Sub-samples of the sediments were fractionated in a cascade of sieves of different mesh sizes to determine the grain size distributions. The organic contents of the sediments were determined as weight loss on ignition. The dataset comprises 11,400 count and biomass records for 103 infaunal taxa (89 % on species level, 11 % others) from 528 samples. Sediments were characterised for 176 van Veen grabs.