Description: The Ocean Model Intercomparison Project (OMIP) focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6). OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations) vs. when integrated within fully coupled Earth system models (CMIP6). Here we detail simulation protocols and diagnostics for OMIP's biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948–2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF6) and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen). Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1) will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup) will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, CTabio and 14CTabio, to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation protocols are founded on those from previous phases of the Ocean Carbon-Cycle Model Intercomparison Project. They have been merged and updated to reflect improvements concerning gas exchange, carbonate chemistry, and new data for initial conditions and atmospheric gas histories. Code is provided to facilitate their implementation.

Description: A high-resolution dynamical model (Nucleus for European Modelling of the Ocean, Mediterranean configuration – NEMO-MED12) was used to give the first simulation of the distribution of radiocarbon (14C) across the whole Mediterranean Sea. The simulation provides a descriptive overview of both the natural pre-bomb 14C and the entire anthropogenic radiocarbon transient generated by the atmospheric bomb tests performed in the 1950s and early 1960s. The simulation was run until 2011 to give the post-bomb distribution. The results are compared to available in situ measurements and proxy-based reconstructions. The radiocarbon simulation allows an additional and independent test of the dynamical model, NEMO-MED12, and its performance to produce the thermohaline circulation and deep-water ventilation. The model produces a generally realistic distribution of radiocarbon when compared with available in situ data. The results demonstrate the major influence of the flux of Atlantic water through the Strait of Gibraltar on the inter-basin natural radiocarbon distribution and characterize the ventilation of intermediate and deep water especially through the propagation of the anthropogenic radiocarbon signal. We explored the impact of the interannual variability on the radiocarbon distribution during the Eastern Mediterranean Transient (EMT) event. It reveals a significant increase in 14C concentration (by more than 60 ‰) in the Aegean deep water and at an intermediate level (value up to 10 ‰) in the western basin. The model shows that the EMT makes a major contribution to the accumulation of radiocarbon in the eastern Mediterranean deep waters.

Description: This archive contains all output from the PISCES-v2 model, containing 24 carbon, nitrate, phosphate and iron tracers. The model is extended with models of lithogenic particles and thorium-230 and protactinium-231, adding eight additional tracers, namely small and big lithogenic particles, and dissolved, small and big Th-230 and Pa-231 (referred to as ProThorP). Thus the model contains 32 different tracers (ptrc) for two different simulations, as well as diagnostic data (diad). The model is executed as part of the global ocean general cirulation model NEMO in the ORCA2 configuration (2° x 2° cos(phi) x 31 layers).

Description: Dissolved manganese (Mn) is a biologically essential element. Moreover, its oxidised form is involved in removing itself and several other trace elements from ocean waters. Here we report the longest thus far (17500 km length) full-depth ocean section of dissolved Mn in the west Atlantic Ocean, comprising 1320 data values of high accuracy. This is the GA02 transect that is part of the GEOTRACES programme, which aims to understand trace element distributions. The goal of this study is to combine these new observations with new, state-of-the-art, modelling to give a first assessment of the main sources and redistribution of Mn throughout the ocean. To this end, we simulate the distribution of dissolved Mn using a global-scale circulation model. This first model includes simple parameterisations to account for the sources, processes and sinks of Mn in the ocean. Oxidation and (photo)reduction, aggregation and settling, as well as biological uptake and remineralisation by plankton are included in the model. Our model provides, together with the observations, the following insights: – The high surface concentrations of manganese are caused by the combination of photoreduction and sources contributing to the upper ocean. The most important sources are sediments, dust, and, more locally, rivers. – Observations and model simulations suggest that surface Mn in the Atlantic Ocean moves downwards into the southward-flowing North Atlantic Deep Water (NADW), but because of strong removal rates there is no elevated concentration of Mn visible any more in the NADW south of 40° N. – The model predicts lower dissolved Mn in surface waters of the Pacific Ocean than the observed concentrations. The intense oxygen minimum zone (OMZ) in subsurface waters is deemed to be a major source of dissolved Mn also mixing upwards into surface waters, but the OMZ is not well represented by the model. Improved high-resolution simulation of the OMZ may solve this problem. – There is a mainly homogeneous background concentration of dissolved Mn of about 0.10–0.15 nM throughout most of the deep ocean. The model reproduces this by means of a threshold on particulate manganese oxides of 25 pM, suggesting that a minimal concentration of particulate Mn is needed before aggregation and removal become efficient. – The observed distinct hydrothermal signals are produced by assuming both a strong source and a strong removal of Mn near hydrothermal vents.

Description: The Ocean Model Intercomparison Project (OMIP) focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6). OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations) vs. when integrated within fully coupled Earth system models (CMIP6). Here we detail simulation protocols and diagnostics for OMIP’s biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948– 2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF6) and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen). Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1) will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup) will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, Cabio T and 14Cabio T , to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation protocols are founded on those from previous phases of the Ocean Carbon-Cycle Model Intercomparison Project. They have been merged and updated to reflect improvements concerning gas exchange, carbonate chemistry, and new data for initial conditions and atmospheric gas histories. Code is provided to facilitate their implementation.

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Geoscientific Model Development 10 (2017): 2169-2199, doi:10.5194/gmd-10-2169-2017.

Description: The Ocean Model Intercomparison Project (OMIP) focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6). OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations) vs. when integrated within fully coupled Earth system models (CMIP6). Here we detail simulation protocols and diagnostics for OMIP's biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948–2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF6) and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen). Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1) will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup) will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, CTabio and 14CTabio, to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation protocols are founded on those from previous phases of the Ocean Carbon-Cycle Model Intercomparison Project. They have been merged and updated to reflect improvements concerning gas exchange, carbonate chemistry, and new data for initial conditions and atmospheric gas histories. Code is provided to facilitate their implementation.

Description: J. C. Orr and L. Bopp were supported by the EU H2020 CRESCENDO project (grant 641816). J. L. Bullister was supported by the NOAA Climate Program Office H. Graven was supported by an EU Marie Curie Career Integration Grant. A. Mouchet benefited from an EU H2020 Marie Curie project (grant 660893). R. G. Najjar was supported by NASA’s Ocean Biology and Biogeochemistry Program and NASA’s Interdisciplinary Science Program. F. Joos was supported by the Swiss National Science Foundation.

Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Philosophical Transactions of the Royal Society A 374 (2016): 20160035, doi:10.1098/rsta.2016.0035.

Description: Hydrothermal activity occurs in all ocean basins, releasing high concentrations of key trace elements and isotopes (TEIs) into the oceans. Importantly, the calculated rate of entrainment of the entire ocean volume through turbulently mixing buoyant hydrothermal plumes is so vigorous as to be comparable to that of deep-ocean thermohaline circulation. Consequently, biogeochemical processes active within deep-ocean hydrothermal plumes have long been known to have the potential to impact global-scale biogeochemical cycles. More recently, new results from GEOTRACES have revealed that plumes rich in dissolved Fe, an important micronutrient that is limiting to productivity in some areas, are widespread above mid-ocean ridges and extend out into the deep-ocean interior. While Fe is only one element among the full suite of TEIs of interest to GEOTRACES, these preliminary results are important because they illustrate how inputs from seafloor venting might impact the global biogeochemical budgets of many other TEIs. To determine the global impact of seafloor venting, however, requires two key questions to be addressed: (i) What processes are active close to vent sites that regulate the initial high-temperature hydrothermal fluxes for the full suite of TEIs that are dispersed through non-buoyant hydrothermal plumes? (ii) How do those processes vary, globally, in response to changing geologic settings at the seafloor and/or the geochemistry of the overlying ocean water? In this paper, we review key findings from recent work in this realm, highlight a series of key hypotheses arising from that research and propose a series of new GEOTRACES modelling, section and process studies that could be implemented, nationally and internationally, to address these issues.

Description: his paper represents the outcomes from a series of break-out group discussions held at Chicheley Hall, UK, on 9 and 10 December 2015, as part of a Quantifying Fluxes and Processes in Trace-Metal Cycling in the Oceans science meeting sponsored by the Royal Society. C.R.G. also acknowledges further support from NSF grant OCE-1130870.