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  • 1
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Description: Microzooplankton (the 20 to 200 µm size class of zooplankton) is recognised as an important part of marine pelagic ecosystems. In terms of biomass and abundance pelagic ciliates are one of the important groups of organism in microzooplankton. However, their rates - grazing and growth - , feeding behaviour and prey preferences are poorly known and understood. A set of data was assembled in order to derive a better understanding of pelagic ciliates rates, in response to parameters such as prey concentration, prey type (size and species), temperature and their own size. With these objectives, literature was searched for laboratory experiments with information on one or more of these parameters effect studied. The criteria for selection and inclusion in the database included: (i) controlled laboratory experiment with a known ciliates feeding on a known prey; (ii) presence of ancillary information about experimental conditions, used organisms - cell volume, cell dimensions, and carbon content. Rates and ancillary information were measured in units that meet the experimenter need, creating a need to harmonize the data units after collection. In addition different units can link to different mechanisms (carbon to nutritive quality of the prey, volume to size limits). As a result, grazing rates are thus available as pg C/(ciliate*h), µm**3/(ciliate*h) and prey cell/(ciliate*h); clearance rate was calculated if not given and growth rate is expressed as the growth rate per day.
    Keywords: EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis
    Type: Dataset
    Format: application/zip, 1.4 MBytes
    Location Call Number Limitation Availability
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  • 2
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    Unknown
    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Description: Microzooplankton (the 20 to 200 µm size class of zooplankton) is recognised as an important part of marine pelagic ecosystems. In terms of biomass and abundance heterotrophic dinoflagellates are one of the important groups of organism in microzooplankton. However, their rates - grazing and growth - , feeding behaviour and prey preferences are poorly known and understood. A set of data was assembled in order to derive a better understanding of heterotrophic dinoflagellates rates, in response to parameters such as prey concentration, prey type (size and species), temperature and their own size. With these objectives, literature was searched for laboratory experiments with information on one or more of these parameters effect studied. The criteria for selection and inclusion in the database included: (i) controlled laboratory experiment with a known dinoflagellate feeding on a known prey; (ii) presence of ancillary information about experimental conditions, used organisms - cell volume, cell dimensions, and carbon content. Rates and ancillary information were measured in units that meet the experimenter need, creating a need to harmonize the data units after collection. In addition different units can link to different mechanisms (carbon to nutritive quality of the prey, volume to size limits). As a result, grazing rates are thus available as pg C dinoflagellate-1 h-1, µm3 dinoflagellate-1 h-1 and prey cell dinoflagellate-1 h-1; clearance rate was calculated if not given and growth rate is expressed as the growth rate per day.
    Keywords: EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis
    Type: Dataset
    Format: application/zip, 425.4 kBytes
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2024-01-26
    Description: The present data compilation includes dinoflagellates growth rate, grazing rate and gross growth efficiency determined either in the field or in laboratory experiments. From the existing literature, we synthesized all data that we could find on dinoflagellates. Some sources might be missing but none were purposefully ignored. We did not include autotrophic dinoflagellates in the database, but mixotrophic organisms may have been included. This is due to the large uncertainty about which taxa are mixotrophic, heterotrophic or symbiont bearing. Field data on microzooplankton grazing are mostly comprised of grazing rate using the dilution technique with a 24h incubation period. Laboratory grazing and growth data are focused on pelagic ciliates and heterotrophic dinoflagellates. The experiment measured grazing or growth as a function of prey concentration or at saturating prey concentration (maximal grazing rate). When considering every single data point available (each measured rate for a defined predator-prey pair and a certain prey concentration) there is a total of 801 data points for the dinoflagellates, counting experiments that measured growth and grazing simultaneously as 1 data point.
    Keywords: 00DEQ029; ASC-1992; ASC-1993; ASC-1995; Atlantic, Vineyard Sound; Basin Scale Analysis, Synthesis and Integration; Bucket, plastic; Carbon per cell; CCMP1834; Cell biovolume; Dinoflagellata, cell biovolume; Dinoflagellata equivalent spherical diameter; East China Sea; Equivalent spherical diameter; EURO-BASIN; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; Event label; EXP; Experiment; FEEDEXP_2005; FEEDEXP_DINO_2000; FEEDEXP_DINO_2005; Geum_Estuary; Geum, Korea, Asia; Golf of Mexico; GPSMK0209; Grazing rate as carbon per individual; Gross growth efficiency; Gwangyang_offshore; GWS_BUESUM_1993; GYRE1994_GM; HARIMA_GD; HTMS0402; IESHIMA_GD; Inner Oslofjord; Kattegat; Kattegat_PNET; Latitude of event; Longitude of event; LpSIO95; MASAN_BAY_2003; MASAN_BAY_2004; MASAN_BAY_2005; Net; NET; OSLOFJORD_DL_1994; P_piscicida_FEEDEXP; Pacific Ocean; PDHMS0206; PLA; Plankton net; PMCJH99; Port Aransas, Aransas ship channel; Prey/Predator, carbon per cell ratio; Prey/Predator, cell biovolume ratio; Prey/Predator, equivalent spherical diameter ratio; PUGET_SOUND_2005; Puget Sound, Salish Sea; Reference/source; Scripps_P_Fragilidium; Scripps_P_Proto; Seto Inland Sea; Taxon/taxa; TISO_NCM; TOKYO_BAY_GD; Tokyo Bay; Treatment: temperature; Uniform resource locator/link to reference; VS_MS_1993; Wadden Sea, North Sea, Germany; Water sample; WB; WS
    Type: Dataset
    Format: text/tab-separated-values, 2584 data points
    Location Call Number Limitation Availability
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  • 4
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    PANGAEA
    In:  Supplement to: Sailley, Sevrine; Buitenhuis, Erik Theodoor (2014): Microzooplankton functional responses in the lab and in the field. Earth System Science Data Discussions, 7(1), 149-167, https://doi.org/10.5194/essdd-7-149-2014
    Publication Date: 2024-01-26
    Description: The present data compilation includes ciliates growth rate, grazing rate and gross growth efficiency determined either in the field or in laboratory experiments. From the existing literature, we synthesized all data that we could find on cilliate. Some sources might be missing but none were purposefully ignored. Field data on microzooplankton grazing are mostly comprised of grazing rate using the dilution technique with a 24h incubation period. Laboratory grazing and growth data are focused on pelagic ciliates and heterotrophic dinoflagellates. The experiment measured grazing or growth as a function of prey concentration or at saturating prey concentration (maximal grazing rate). When considering every single data point available (each measured rate for a defined predator-prey pair and a certain prey concentration) there is a total of 1485 data points for the ciliates, counting experiments that measured growth and grazing simultaneously as 1 data point.
    Keywords: Basin Scale Analysis, Synthesis and Integration; BH-FAV; Boston Harbour; BOV_1985; BPS_1; BPS_2; BPS_3; BPS_4; BPS_5; BPS_6; BPS_7; BPS_8; Carbon per cell; Cell biovolume; Chicamacomico River, Bestpitch Bridge; Choptank River; CHR_2000; Ciliates, cell biovolume; Ciliates, equivalent spherical diameter; Equivalent spherical diameter; EURO-BASIN; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; Event label; EXP; Experiment; F_ehrenbergii_FEEDEXP_1; F_ehrenbergii_FEEDEXP_2; F_taraikaensis_FEEDEXP; FEEDEXP_CILIATES_1978; FEEDEXP_CILIATES_1986; FEEDEXP_CILIATES_1988; FEEDEXP_CILIATES_1991; FEEDEXP_CILIATES_1996; FEEDEXP_CILIATES_2005; Grazing rate as carbon per individual; Gross growth efficiency; Kosterfjord; KUNSAN_MKE_1; KUNSAN_MKE_2; L_spiralis_FEEDEXP; Latitude of event; Longitude of event; ManKyeong Estuary; Narragansett Bay; NBAY_1985; NBAY_1986; outer Oslofjord; PDQ82; PERCH_POND_FALMA_1; PERCH_POND_FALMA_2; PLA; Plankton net; Prey/Predator, carbon per cell ratio; Prey/Predator, cell biovolume ratio; Prey/Predator, equivalent spherical diameter ratio; PUGET_SOUND_1994; Puget Sound, Salish Sea; Reference/source; S_sulcatum_FEEDEXP_1; S_sulcatum_FEEDEXP_2; Strombidium_FEEDEXP; Taxon/taxa; Treatment: temperature; Uniform resource locator/link to reference; Water sample; WS
    Type: Dataset
    Format: text/tab-separated-values, 5268 data points
    Location Call Number Limitation Availability
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  • 5
    Publication Date: 2024-04-02
    Description: Microzooplankton database. Originally published in: Buitenhuis, Erik, Richard Rivkin, Sévrine Sailley, Corinne Le Quéré (2010) Biogeochemical fluxes through microzooplankton. Global Biogeochemical Cycles Vol. 24, GB4015, doi:10.1029/2009GB003601 This new version has had some mistakes corrected.
    Keywords: MAREMIP; MARine Ecosystem Model Intercomparison Project
    Type: Dataset
    Format: application/zip, 4 MBytes
    Location Call Number Limitation Availability
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  • 6
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: Thesis , notRev
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  • 7
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 110 (2013): 2438–2439, doi:10.1073/pnas.1222736110.
    Description: Populations of marine species wax and wane over time and space reflecting environmental forcing, biological dynamics, and in some cases human perturbations such as fishing, habitat destruction and climate change. The growing availability of multi‐decadal observational records opens new windows on how ocean ecosystems function, but the analysis and interpretation of such long time-­‐series also requires new mathematical tools and conceptual models. Population time-­‐ series often show strong variations at decadal time‐scales, and a central question is whether this arises from non‐linear biological processes or simply tracking of external physical variability. Borrowing from climate research, Di Lorenzo and Ohman develop a novel approach for deciphering links between physical forcing and biological response, using as a test case time‐series of marine zooplankton abundances off the coast of California.
    Description: The authors gratefully acknowledge support from the U.S. National Science Foundation through the Palmer Long Term Ecological Research (LTER) project (http://pal.lternet.edu/) (NSF OPP-­‐0823101).
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/pdf
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  • 8
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecological Modelling 261-262 (2013): 43–57, doi:10.1016/j.ecolmodel.2013.04.006.
    Description: Dynamic Green Ocean Models (DGOMs) include different sets of Plankton Functional Types (PFTs) and equations, thus different interactions and food webs. Using four DGOMs (CCSM-BEC, PISCES, NEMURO and PlankTOM5) we explore how predator–prey interactions influence food web dynamics. Using each model's equations and biomass output, interaction strengths (direct and specific) were calculated and the role of zooplankton in modeled food webs examined. In CCSM-BEC the single size-class adaptive zooplankton preys on different phytoplankton groups according to prey availability and food preferences, resulting in a strong top-down control. In PISCES the micro- and meso-zooplankton groups compete for food resources, grazing phytoplankton depending on their availability in a mixture of bottom-up and top-down control. In NEMURO macrozooplankton controls the biomass of other zooplankton PFTs and defines the structure of the food web with a strong top-down control within the zooplankton. In PlankTOM5, competition and predation between micro- and meso-zooplankton along with strong preferences for nanophytoplankton and diatoms, respectively, leads to their mutual exclusion with a mixture of bottom-up and top-down control of the plankton community composition. In each model, the grazing pressure of the zooplankton PFTs and the way it is exerted on their preys may result in the food web dynamics and structure of the model to diverge from the one that was intended when designing the model. Our approach shows that the food web dynamics, in particular the strength of the predator–prey interactions, are driven by the choice of parameters and more specifically the food preferences. Consequently, our findings stress the importance of equation and parameter choice as they define interactions between PFTs and overall food web dynamics (competition, bottom-up or top-down effects). Also, the differences in the simulated food-webs between different models highlight the gap of knowledge for zooplankton rates and predator–prey interactions. In particular, concerted effort is needed to identify the key growth and loss parameters and interactions and quantify them with targeted laboratory experiments in order to bring our understanding of zooplankton at a similar level to phytoplankton.
    Description: This work was supported with funding from Palmer LTER (NSF OPP-0823101) and C-MORE (NSF EF-0424599).
    Keywords: Dynamic Green Ocean Model ; Plankton Functional Types ; Zooplankton ; Food web dynamic ; Predator–prey interactions
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 9
    Publication Date: 2022-05-25
    Description: Author Posting. © The Oceanography Society, 2013. This article is posted here by permission of The Oceanography Society] for personal use, not for redistribution. The definitive version was published in Oceanography 26, no. 3 (2013): 190–203, doi:10.5670/oceanog.2013.62.
    Description: The extent, duration, and seasonality of sea ice and glacial discharge strongly influence Antarctic marine ecosystems. Most organisms' life cycles in this region are attuned to ice seasonality. The annual retreat and melting of sea ice in the austral spring stratifies the upper ocean, triggering large phytoplankton blooms. The magnitude of the blooms is proportional to the winter extent of ice cover, which can act as a barrier to wind mixing. Antarctic krill, one of the most abundant metazoan populations on Earth, consume phytoplankton blooms dominated by large diatoms. Krill, in turn, support a large biomass of predators, including penguins, seals, and whales. Human activity has altered even these remote ecosystems. The western Antarctic Peninsula region has warmed by 7°C over the past 50 years, and sea ice duration has declined by almost 100 days since 1978, causing a decrease in phytoplankton productivity in the northern peninsula region. Besides climate change, Antarctic marine systems have been greatly altered by harvesting of the great whales and now krill. It is unclear to what extent the ecosystems we observe today differ from the pristine state.
    Description: Palmer LTER is supported by National Science Foundation grant ANT-0823101. Amsler was supported by NSF ANT- 0838773 and ANT-1041022. RaTS is a component of the Polar Oceans research program, funded by the British Antarctic Survey.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 10
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Ecological Modelling 376 (2018): 54-67, doi:10.1016/j.ecolmodel.2018.03.003.
    Description: The present study describes the responses of summer phytoplankton biomass to changes in top-down forcing (expressed as zooplankton mortality) in three ecosystems (the North Sea, the Baltic Sea and the Nordic Seas) across different 3D ecosystem models. In each of the model set-ups, we applied the same changes in the magnitude of mortality (±20%) of the highest trophic zooplankton level (Z1). Model results showed overall dampened responses of phytoplankton relative to Z1 biomass. Phytoplankton responses varied depending on the food web structure and trophic coupling represented in the models. Hence, a priori model assumptions were found to influence cascades and pathways in model estimates and, thus, become highly relevant when examining ecosystem pressures such as fishing and climate change. Especially, the different roles and parameterizations of additional zooplankton groups grazed by Z1, and their importance for the outcome, emphasized the need for better calibration data. Spatial variability was high within each model indicating that physics (hydrodynamics and temperature) and nutrient dynamics also play vital roles for ecosystem responses to top-down effects. In conclusion, the model comparison indicated that changes in top-down forcing in combination with the modelled food-web structure affect summer phytoplankton biomass and, thereby, indirectly influence water quality of the systems.
    Description: The work was supported by the EU grant “Vectors of Change in Oceans and Seas, Marine Life, Impact and Economic Sectors” (Vectors, FP7/2010-2013) and The Danish Council for Strategic Research to the project “Integrated Management of Agriculture, Fishery, Environment and Economy” (IMAGE, grant no. 09-067259).
    Keywords: Plankton functional types ; Trophic cascades ; Zooplankton mortality ; Phytoplankton ; Ensemble modelling
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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