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  • 1
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    Oceanic Frontal Divergence Alters Phytoplankton Competition and Distribution (2023)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2024-02-07
    Description: Ecological interactions among phytoplankton occur in a moving fluid environment. Oceanic flows can modulate the competition and coexistence between phytoplankton populations, which in turn can affect ecosystem function and biogeochemical cycling. We explore the impact of submesoscale velocity gradients on phytoplankton ecology using observations, simulations, and theory. Observations reveal that the relative abundance of Synechoccocus oligotypes varies on 1–10 km scales at an ocean front with submesoscale velocity gradients at the same scale. Simulations in realistic flow fields demonstrate that regions of divergence in the horizontal flow field can substantially modify ecological competition and dispersal on timescales of hours to days. Regions of positive (negative) divergence provide an advantage (disadvantage) to local populations, resulting in up to ∼20% variation in community composition in our model. We propose that submesoscale divergence is a plausible contributor to observed taxonomic variability at oceanic fronts, and can lead to regional variability in community composition.
    Type: Article , PeerReviewed
    Format: text
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 2
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    The Bay of Bengal exposes abundant photosynthetic picoplankton and newfound diversity along salinity‐driven gradients (2023)
    Wiley
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    Publication Date: 2024-02-07
    Description: The Bay of Bengal (BoB) is a 2,600,000 km2 expanse in the Indian Ocean upon which many humans rely. However, the primary producers underpinning food chains here remain poorly characterized. We examined phytoplankton abundance and diversity along strong BoB latitudinal and vertical salinity gradients—which have low temperature variation (27–29°C) between the surface and subsurface chlorophyll maximum (SCM). In surface waters, Prochlorococcus averaged 11.7 ± 4.4 × 104 cells ml−1, predominantly HLII, whereas LLII and ‘rare’ ecotypes, HLVI and LLVII, dominated in the SCM. Synechococcus averaged 8.4 ± 2.3 × 104 cells ml−1 in the surface, declined rapidly with depth, and population structure of dominant Clade II differed between surface and SCM; Clade X was notable at both depths. Across all sites, Ostreococcus Clade OII dominated SCM eukaryotes whereas communities differentiated strongly moving from Arabian Sea-influenced high salinity (southerly; prasinophytes) to freshwater-influenced low salinity (northerly; stramenopiles, specifically, diatoms, pelagophytes, and dictyochophytes, plus the prasinophyte Micromonas) surface waters. Eukaryotic phytoplankton peaked in the south (1.9 × 104 cells ml−1, surface) where a novel Ostreococcus was revealed, named here Ostreococcus bengalensis. We expose dominance of a single picoeukaryote and hitherto ‘rare’ picocyanobacteria at depth in this complex ecosystem where studies suggest picoplankton are replacing larger phytoplankton due to climate change.
    Type: Article , PeerReviewed
    Format: text
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 3
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    A single Prochlorococcus ecotype dominates the tropical Bay of Bengal with ultradian growth (2024)
    Wiley
    Details
    Publication Date: 2024-04-10
    Description: The Bay of Bengal (BoB) spans 〉2.2 million km(2) in the northeastern Indian Ocean and is bordered by dense populations that depend upon its resources. Over recent decades, a shift from larger phytoplankton to picoplankton has been reported, yet the abundance, activity, and composition of primary producer communities are not well-characterized. We analysed the BoB regions during the summer monsoon. Prochlorococcus ranged up to 3.14 x 10(5) cells mL(-1 )in the surface mixed layer, averaging 1.74 +/- 0.46 x 10(5) in the upper 10 m and consistently higher than Synechococcus and eukaryotic phytoplankton. V1-V2 rRNA gene amplicon analyses showed the High Light II (HLII) ecotype formed 98 +/- 1% of Prochlorococcus amplicons in surface waters, comprising six oligotypes, with the dominant oligotype accounting for 65 +/- 4% of HLII. Diel sampling of a coherent water mass demonstrated evening onset of cell division and rapid Prochlorococcus growth between 1.5 and 3.1 div day-1, based on cell cycle analysis, as confirmed by abundance-based estimates of 2.1 div day(-1). Accumulation of Prochlorococcus produced by ultradian growth was restricted by high loss rates. Alongside prior Arabian Sea and tropical Atlantic rates, our results indicate Prochlorococcus growth rates should be reevaluated with greater attention to latitudinal zones and influences on contributions to global primary production.
    Type: Article , PeerReviewed
    Format: text
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 4
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    UCTD and EcoCTD Observations from the CALYPSO Pilot Experiment (2018): Cruise and Data Report (2019)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-25
    Description: From May 27, 2018 to June 02, 2018, a scientific campaign was conducted in the Alboran Sea as part of an ONR Departmental Research Initiative, CALYPSO. The pilot cruise involved two ships: the R/V Socib, tasked with sampling fixed lines repeatedly, and the NRV Alliance that surveyed along the trajectory of Lagrangian platforms. A large variety of assets were deployed from the NRV Alliance, with the objective to identify coherent Lagrangian pathways from the surface ocean to interior. As part of the field campaign, an Underway-CTD (UCTD) system was used to measure vertical profiles of salinity, temperature and other properties while steaming, to achieve closely spaced measurements in the horizontal along the ship's track. Both a UCTD probe and an biooptically augmented probe, named EcoCTD, were deployed. The EcoCTD collects concurrent physical and bio-optical observations. This report focuses exclusively on the data collected by these two underway systems. It describes th e datasets collected during the pilot cruise, as well as the important processing steps developed for the EcoCTD.
    Description: Funding was provided by the Office of Naval Research under Contract #N000141613130
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
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  • 5
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    Submesoscale processes at shallow salinity fronts in the Bay of Bengal : observations during the winter monsoon (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 479-509, doi:10.1175/JPO-D-16-0283.1.
    Description: Lateral submesoscale processes and their influence on vertical stratification at shallow salinity fronts in the central Bay of Bengal during the winter monsoon are explored using high-resolution data from a cruise in November 2013. The observations are from a radiator survey centered at a salinity-controlled density front, embedded in a zone of moderate mesoscale strain (0.15 times the Coriolis parameter) and forced by winds with a downfront orientation. Below a thin mixed layer, often ≤10 m, the analysis shows several dynamical signatures indicative of submesoscale processes: (i) negative Ertel potential vorticity (PV); (ii) low-PV anomalies with O(1–10) km lateral extent, where the vorticity estimated on isopycnals and the isopycnal thickness are tightly coupled, varying in lockstep to yield low PV; (iii) flow conditions susceptible to forced symmetric instability (FSI) or bearing the imprint of earlier FSI events; (iv) negative lateral gradients in the absolute momentum field (inertial instability); and (v) strong contribution from differential sheared advection at O(1) km scales to the growth rate of the depth-averaged stratification. The findings here show one-dimensional vertical processes alone cannot explain the vertical stratification and its lateral variability over O(1–10) km scales at the radiator survey.
    Description: S. Ramachandran acknowledges support from the National Science Foundation through award OCE 1558849 and the U.S. Office of Naval Research, Grants N00014-13-1-0456 and N00014-17- 1-2355. A. Tandon acknowledges support from the U.S. Office of Naval Research, Grants N00014-13-1-0456 and N00014-17-1-2355. J. T. Farrar and R. A. Weller were supported by the U.S. Office of Naval Research, Grant N00014-13-1-0453, to collect the UCTD data and process theUCTD and shipboard meteorological data. J. Nash, J. Mackinnon, and A. F. Waterhouse acknowledge support from the U. S. Office of Naval Research, Grants N00014-13-1-0503 and N00014-14-1-0455. E. Shroyer acknowledges support from the U. S. Office of Naval Research, Grants N00014-14-10236 and N00014-15- 12634. A. Mahadevan acknowledges support fromthe U. S. Office of Naval Research, Grant N00014-13-10451. A. J. Lucas and R. Pinkel acknowledge support from the U. S. Office of Naval Research, Grant N00014-13-1-0489.
    Description: 2018-08-26
    Keywords: Indian Ocean ; Baroclinic flows ; Potential vorticity ; Fronts ; Monsoons ; Oceanic mixed layer
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
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    Flow-induced channelization in a porous medium (2012)
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    Publication Date: 2022-05-25
    Description: Author Posting. © Europhysics Letters Association, 2012. This is the author's version of the work. It is posted here by permission of Europhysics Letters Association for personal use, not for redistribution. The definitive version was published in EPL (Europhysics Letters) 98 (2012): 58003, doi:10.1209/0295-5075/98/58003.
    Description: Flow through a saturated, granular, porous medium can lead to internal erosion, preferential flow enhancement and the formation of channels within the bulk of the medium. We examine this phenomenon using a combination of experimental observations, continuum theory and numerical simulations in a minimal setting. Our experiments are carried out by forcing water through a Hele-Shaw cell packed with bidisperse grains. When the local fluid flow-induced stress exceeds a critical threshold, the smaller grains are dislodged and transported, thus changing the porosity of the medium and thence the local hydraulic conductivity and the development of erosional channels. The erosion is ultimately arrested due to the drop in the mean pressure gradient, while most of the flow occurs through the channels. These observations are consistent with a simple theoretical model for channelization in terms of a macroscopic multiphase description of erosion. We model a dynamical porosity field that evolves along with the volume fraction of the mobile and immobile grains in response to fluid flow. Numerical solutions of the resulting initial boundary value problem yield results for the dynamics and morphology that are in qualitative agreement with our experiments. In addition to providing a basis for channelization in porous media, our study highlights how heterogeneity in porous media may arise from flow as a function of the erosion threshold, and thus potentially offers the ability to control channelization.
    Description: We thank DOE NICCR (AM, AK), Harvard-NSF MRSEC (LM) and the MacArthur Foundation for partial support.
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/pdf
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  • 7
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    Large-scale alignment of oceanic nitrate and density (2014)
    John Wiley & Sons
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 118 (2013): 5322–5332, doi:10.1002/jgrc.20379.
    Description: By analyzing global data, we find that over large scales, surfaces of constant nitrate are often better aligned with isopycnals than with isobars, particularly below the euphotic zone. This is unexplained by the movement of isopycnal surfaces in response to eddies and internal waves, and is perhaps surprising given that the biological processes that alter nitrate distributions are largely depth dependent. We provide a theoretical framework for understanding the orientation of isonitrate surfaces in relation to isopycnals. In our model, the nitrate distribution results from the balance between depth-dependent biological processes (nitrate uptake and remineralization), and the along-isopycnal homogenization of properties by eddy fluxes (parameterized by eddy diffusivity). Where the along-isopycnal eddy diffusivity is relatively large, nitrate surfaces are better aligned with isopycnals than isobars. We test our theory by estimating the strength of the eddy diffusivity and biological export production from global satellite data sets and comparing their contributions. Indeed, we find that below the euphotic zone, the mean isonitrate surfaces are oriented along isopycnals where the isopycnal eddy diffusivity is large, and deviate where the biological export of organic matter is relatively strong. Comparison of nitrate data from profiling floats in different regions corroborates the hypothesis by showing variations in the nitrate-density relationship from one part of the ocean to another.
    Description: We acknowledge the support of the National Science Foundation (Grant OCE-0928617) and NASA (Grant NNX- 08AL80G).
    Description: 2014-04-15
    Keywords: Nitrate ; Export ; Mixing ; Isopycnal ; Alignment ; Large-scale
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
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    Linear stability analysis for monami in a submerged seagrass bed (2016)
    Cambridge University Press
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    Publication Date: 2022-05-25
    Description: © Cambridge University Press, 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Fluid Mechanics 786 (2016): R1, doi:10.1017/jfm.2015.642.
    Description: The onset of monami – the synchronous waving of seagrass beds driven by a steady flow – is modelled as a linear instability of the flow. Unlike previous works, our model considers the drag exerted by the grass in establishing the steady flow profile, and in damping out perturbations to it. We find two distinct modes of instability, which we label modes 1 and 2. Mode 1 is closely related to Kelvin–Helmholtz instability modified by vegetation drag, whereas mode 2 is unrelated to Kelvin–Helmholtz instability and arises from an interaction between the flow in the vegetated and unvegetated layers. The vegetation damping, according to our model, leads to a finite threshold flow for both of these modes. Experimental observations for the onset and frequency of waving compare well with model predictions for the instability onset criteria and the imaginary part of the complex growth rate respectively, but experiments lie in a parameter regime where the two modes can not be distinguished.
    Description: M.M.B. was supported by the Collective Interactions Unit, OIST Graduate University, while visiting Brown University. A.M. was supported by NSF 1131393.
    Keywords: Coastal engineering ; Geophysical and geological flows ; Instability
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
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    Production and destruction of eddy kinetic energy in forced submesoscale eddy-resolving simulations (2016)
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ocean Modelling 105 (2016): 44-59, doi:10.1016/j.ocemod.2016.07.002.
    Description: We study the production and dissipation of the eddy kinetic energy (EKE) in a submesoscale eddy field forced with downfront winds using the Process Study Ocean Model (PSOM) with a horizontal grid resolution of 0.5 km. We simulate an idealized 100 m deep mixed-layer front initially in geostrophic balance with a jet in a domain that permits eddies within a range of O(1km–100 km). The vertical eddy viscosities and the dissipation are parameterized using four different subgrid vertical mixing parameterizations: the k−ϵ,k−ϵ, the KPP, and two different constant eddy viscosity and diffusivity profiles with a magnitude of O(10−2m2s−1) in the mixed layer. Our study shows that strong vertical eddy viscosities near the surface reduce the parameterized dissipation, whereas strong vertical eddy diffusivities reduce the lateral buoyancy gradients and consequently the rate of restratification by mixed-layer instabilities (MLI). Our simulations show that near the surface, the spatial variability of the dissipation along the periphery of the eddies depends on the relative alignment of the ageostrophic and geostrophic shear. Analysis of the resolved EKE budgets in the frontal region from the simulations show important similarities between the vertical structure of the EKE budget produced by the k−ϵk−ϵ and KPP parameterizations, and earlier LES studies. Such an agreement is absent in the simulations using constant eddy-viscosity parameterizations.
    Description: This research was supported by the Office of Naval Research Grant (N00014-09-1-0196).
    Description: 2018-07-16
    Keywords: Submesoscale ; Mixed layer ; Dissipation ; Eddies ; Restratification ; Vertical mixing
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 10
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    Pump it Up workshop report (2017)
    Woods Hole Oceanographic Institution
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    Publication Date: 2022-05-25
    Description: Workshop held 28-29 September 2017, Cape Cod, MA
    Description: A two-day workshop was conducted to trade ideas and brainstorm about how to advance our understanding of the ocean’s biological pump. The goal was to identify the most important scientific issues that are unresolved but might be addressed with new and future technological advances.
    Keywords: Biological pump
    Repository Name: Woods Hole Open Access Server
    Type: Working Paper
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