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  • 1
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    Stable aerobic and anaerobic coexistence in anoxic marine zones (2020)
    Springer Nature
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zakem, E. J., Mahadevan, A., Lauderdale, J. M., & Follows, M. J. Stable aerobic and anaerobic coexistence in anoxic marine zones. ISME Journal, 14, (2019): 288–301, doi: 10.1038/s41396-019-0523-8.
    Description: Mechanistic description of the transition from aerobic to anaerobic metabolism is necessary for diagnostic and predictive modeling of fixed nitrogen loss in anoxic marine zones (AMZs). In a metabolic model where diverse oxygen- and nitrogen-cycling microbial metabolisms are described by underlying redox chemical reactions, we predict a transition from strictly aerobic to predominantly anaerobic regimes as the outcome of ecological interactions along an oxygen gradient, obviating the need for prescribed critical oxygen concentrations. Competing aerobic and anaerobic metabolisms can coexist in anoxic conditions whether these metabolisms represent obligate or facultative populations. In the coexistence regime, relative rates of aerobic and anaerobic activity are determined by the ratio of oxygen to electron donor supply. The model simulates key characteristics of AMZs, such as the accumulation of nitrite and the sustainability of anammox at higher oxygen concentrations than denitrification, and articulates how microbial biomass concentrations relate to associated water column transformation rates as a function of redox stoichiometry and energetics. Incorporating the metabolic model into an idealized two-dimensional ocean circulation results in a simulated AMZ, in which a secondary chlorophyll maximum emerges from oxygen-limited grazing, and where vertical mixing and dispersal in the oxycline also contribute to metabolic co-occurrence. The modeling approach is mechanistic yet computationally economical and suitable for global change applications.
    Description: We are grateful for the thorough and thoughtful comments of two anonymous reviewers. We also thank Andrew Babbin for helpful comments. EJZ was supported by the Simons Foundation (Postdoctoral Fellowship in Marine Microbial Ecology). AM was supported by the Office of Naval Research (ONR #N000-14-15-1-2555). JML was supported by U.S. National Science Foundation (NSF #OCE-1259388). MJF was supported by the Gordon and Betty Moore Foundation (GBMF #3778) and the Simons Foundation: the Simons Collaboration on Ocean Processes and Ecology (SCOPE #329108) and the Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems (CBIOMES #549931).
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Flow-driven branching in a frangible porous medium (2020)
    American Physical Society
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Derr, N. J., Fronk, D. C., Weber, C. A., Mahadevan, A., Rycroft, C. H., & Mahadevan, L. Flow-driven branching in a frangible porous medium. Physical Review Letters, 125(15), (2020): 158002, doi:10.1103/PhysRevLett.125.158002.
    Description: Channel formation and branching is widely seen in physical systems where movement of fluid through a porous structure causes the spatiotemporal evolution of the medium. We provide a simple theoretical framework that embodies this feedback mechanism in a multiphase model for flow through a frangible porous medium with a dynamic permeability. Numerical simulations of the model show the emergence of branched networks whose topology is determined by the geometry of external flow forcing. This allows us to delineate the conditions under which splitting and/or coalescing branched network formation is favored, with potential implications for both understanding and controlling branching in soft frangible media.
    Description: N. D. was partially supported by the NSF-Simons Center for Mathematical and Statistical Analysis of Biology at Harvard, Grant No. 1764269, and the Harvard Quantitative Biology Initiative. C. H. R. and N. D. were partially supported by the National Science Foundation under Grant No. DMS-1753203. C. H. R. was partially supported by the Applied Mathematics Program of the U.S. DOE Office of Science Advanced Scientific Computing Research under Contract No. DE-AC02-05CH11231. L. M. was partially supported by the National Science Foundation under Grants No. DMR-2011754 and No. DMR-1922321.
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Coherent pathways for vertical transport from the Surface Ocean to Interior (2021)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 101(11), (2020): E1996-E2004, https://doi.org/10.1175/BAMS-D-19-0305.1.
    Description: A long-standing challenge in oceanography is the observing, modeling, and prediction of vertical transport, which links the sunlit and atmospherically mediated surface boundary layer with the deeper ocean. Vertical motions play a critical role in the exchange of heat, freshwater, and biogeochemical tracers between the surface and the ocean interior. The most intense vertical velocities occur at horizontal scales less than 10 km, making them difficult to observe in the ocean and to resolve in models. Understanding how finescale turbulent motions and 0.1–10 km submesoscale processes contribute to the large-scale budgets of nutrients, oxygen, carbon, and heat and affect sea surface temperature, the air–sea exchange of gases, and the carbon cycle is one of the key challenges in oceanography.
    Description: CALYPSO is a Departmental Research Initiative (DRI) funded by the U.S. Office of Naval Research (ONR). It is a collaborative program involving more than 30 scientists and students and multiple institutions in the United States, Spain, and Italy. Measurements were conducted from the NRV Alliance, Pourquoi Pas?, and SOCIB. We are grateful to the captains and crews of these research vessels and the technical and scientific staff involved in making measurements, running models, analyzing data, and providing support.
    Description: 2021-05-01
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Effects of oceanic mesoscale and submesoscale frontal processes on the vertical transport of phytoplankton (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124(8), (2019): 5999-6014, doi: 10.1029/2019JC015034.
    Description: Oceanic fronts are dynamically active regions of the global ocean that support upwelling and downwelling with significant implications for phytoplankton production and export. However (on time scales urn:x-wiley:jgrc:media:jgrc23568:jgrc23568-math-0001 the inertial time scale), the vertical velocity is 103–104 times weaker than the horizontal velocity and is difficult to observe directly. Using intensive field observations in conjunction with a process study ocean model, we examine vertical motion and its effect on phytoplankton fluxes at multiple spatial horizontal scales in an oligotrophic region in the Western Mediterranean Sea. The mesoscale ageostrophic vertical velocity (∼10 m/day) inferred from our observations shapes the large‐scale phytoplankton distribution but does not explain the narrow (1–10 km wide) features of high chlorophyll content extending 40–60 m downward from the deep chlorophyll maximum. Using modeling, we show that downwelling submesoscale features concentrate 80% of the downward vertical flux of phytoplankton within just 15% of the horizontal area. These submesoscale spatial structures serve as conduits between the surface mixed layer and pycnocline and can contribute to exporting carbon from the sunlit surface layers to the ocean interior.
    Description: The AlborEx experiment was conducted in the framework of PERSEUS EU‐funded project (Grant 287600) and was led by the Spanish National Research Council (CSIC) and involved other national and international partners: Balearic Islands Coastal Observing and Forecasting System (SOCIB, Spain); Consiglio Nazionale delle Ricerche (CNR, Italy); Istituto Nazionale di Oceanografia e di Geofisica Sperimentale (OGS, Italy); and Woods Hole Oceanographic Institution (WHOI, ONR Grant N00014‐16‐1‐3130). Glider operations were partially funded by JERICO FP7 project. Part of this work has been carried out as part of the Copernicus Marine Environment Monitoring Service (CMEMS) MedSUB project. CMEMS is implemented by Mercator Ocean in the framework of a delegation agreement with the European Union. S. R. and A. P. acknowledge support from WHOI Subcontract A101339. Data available from authors: Ship CTDs, glider and VM‐ADCP data files are available in the SOCIB data catalog (https://doi.org/10.25704/z5y2-qpye); model data are available at IMEDEA data catalog https://ide.imedea.uib-csic.es/thredds/catalog/data/projects/alborex/catalog.html. We thank all the crew and participants on board R/V SOCIB for their collaboration and Marc Torner and the SOCIB glider Facility for their efficient cooperation. We also thank B. Mourre for numerical data from the Western Mediterranean Operational Model to initialize the Process Study Ocean Model. Figures were created using the cmocean colormaps package (Thyng et al., 2016).
    Keywords: Vertical motion ; Ocean front ; Mesoscale ; Submesoscale ; Transport ; Phytoplankton
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Frontal convergence and vertical velocity measured by drifters in the Alboran Sea (2021)
    American Geophysical Union
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 126(4), (2021): e2020JC016614, https://doi.org/10.1029/2020JC016614.
    Description: Horizontal and vertical motions associated with mesoscale (10–100 km) and submesoscale (1–10 km) features, such as fronts, meanders, eddies, and filaments, play a critical role in redistributing physical and biogeochemical properties in the ocean. This study makes use of a multiplatform data set of 82 drifters, a Lagrangian float, and profile timeseries of temperature and salinity, obtained in a ∼1-m/s semipermanent frontal jet in the Alboran Sea as part of CALYPSO (Coherent Lagrangian Pathways from the Surface Ocean to Interior). Drifters drogued at ∼1-m and 15-m depth capture the mesoscale and submesoscale circulation aligning along the perimeter of fronts due to horizontal shear. Clusters of drifters are used to estimate the kinematic properties, such as vorticity and divergence, of the flow by fitting a bivariate plane to the horizontal drifter velocities. Clusters with submesoscale length scales indicate normalized vorticity ζ/f 〉 1 with Coriolis frequency f and normalized divergence of (1) occurring in patches along the front, with error variance around 10%. By computing divergence from drifter clusters at two different depths, we estimate minimum vertical velocity of (−100 m day−1) in the upper 10 m of the water column. These results are at least twice as large as previous estimates of vertical velocity in the region. Location, magnitude, and timing of the convergence are consistent with behavior of a Lagrangian float subducting in the center of a drifter cluster. These results improve our understanding of frontal subduction and quantify convergence and vertical velocity using Lagrangian tools.
    Description: This research was supported by the Office of Naval Research (ONR) Departmental Research Initiative CALYPSO under program officers Terri Paluszkiewicz and Scott Harper. The authors' ONR grant numbers are as follows: D. R. Tarry, A. Pascual, S. Ruiz and A. Mahadevan N000141613130, S. Essink N000146101612470, P.-M. Poulain N000141812418, T. OÖzgökmen N000141812138, L. R. Centurioni N000141712517 and N00014191269, T. Farrar N000141812431, A. Shcherbina N000141812139 and N000141812420, and E. A. D'Asaro N000141812139.
    Keywords: Alboran Sea ; drifters ; kinematic properties ; Lagrangian float ; submesoscale ; vertical velocity
    Repository Name: Woods Hole Open Access Server
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  • 6
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    How the source depth of coastal upwelling relates to stratification and wind (2022)
    American Geophysical Union
    Details
    Publication Date: 2022-05-29
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 126(12), (2021): e2021JC017621, https://doi.org/10.1029/2021JC017621.
    Description: Wind-driven coastal upwelling is an important process that transports nutrients from the deep ocean to the surface, fueling biological productivity. To better understand what affects the upward transport of nutrients (and many other properties such as temperature, salinity, oxygen, and carbon), it is necessary to know the depth of source waters (i.e., “source depth”) or the density of source waters (“source density”). Here, we focus on the upwelling driven by offshore Ekman transport and present a scaling relation for the source depth and density by considering a balance between the wind-driven upwelling and eddy-driven restratification processes. The scaling suggests that the source depth varies as (τ/N)1/2, while the source density goes as (τ1/2N3/2), where τ is the wind stress and N is the stratification. We test these relations using numerical simulations of an idealized coastal upwelling front with varying constant wind forcing and initial stratification, and we find good agreement between the theory and numerical experiments. This work highlights the importance of considering stratification in wind-driven upwelling dynamics, especially when thinking about how nutrient transport and primary production of coastal upwelling regions might change with increased ocean warming and stratification.
    Description: This work was funded by the ONR grant N00014-17-1-2390, and J. He was supported by the NASA FINESST award 80NSSC19K1350.
    Description: 2022-05-29
    Repository Name: Woods Hole Open Access Server
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  • 7
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    EcoCTD for profiling oceanic physical-biological properties from an underway ship (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 37(5), (2020): 825-840, doi:10.1175/JTECH-D-19-0145.1.
    Description: The study of ocean dynamics and biophysical variability at submesoscales of O(1) km and O(1) h raises several observational challenges. To address these by underway sampling, we recently developed a towed profiler called the EcoCTD, capable of concurrently measuring both hydrographic and bio-optical properties such as oxygen, chlorophyll fluorescence, and optical backscatter. The EcoCTD presents an attractive alternative to currently used towed platforms due to its light footprint, versatility in the field, and ease of deployment and recovery without cranes or heavy-duty winches. We demonstrate its use for gathering high-quality data at submesoscale spatiotemporal resolution. A dataset of bio-optical and hydrographic properties, collected with the EcoCTD during field trials in 2018, highlights its scientific potential for the study of physical–biological interactions at submesoscales.
    Description: Authors would like to acknowledge Melissa Omand, Ben Pietro, and Jing He for their valuable input during the design phase of the EcoCTD, as well as for their support for deploying the EcoCTD in the field. We are grateful to Eva Alou, Andrea Carbonero, and John Allen for providing calibrated data from the shipboard CTD. Authors would also like to thank Don Peters along with Dynamics System Analysis Ltd. for facilitating access to ProteusDS and providing support in using the software. We are grateful to the crew of the RV Armstrong and NRV Alliance for their support in the field. Development of the EcoCTD is supported by the Office of Naval Research (ONR) through the CALYPSO Departmental Research Initiative (Grant N000141613130). Advanced field testing was supported by Woods Hole Oceanographic Institution internal funding. MATLAB routines for data processing are publicly available at https://github.com/mfreilich1/ecoctd_processing.
    Description: 2020-11-08
    Keywords: Fronts ; Upwelling/downwelling ; Vertical motion ; Data processing ; Profilers ; oceanic ; Quality assurance/control
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Sinking flux of particulate organic matter in the oceans: Sensitivity to particle characteristics (2020)
    Nature Research
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Omand, M. M., Govindarajan, R., He, J., & Mahadevan, A. Sinking flux of particulate organic matter in the oceans: Sensitivity to particle characteristics. Scientific Reports, 10(1), (2020): 5582, doi:10.1038/s41598-020-60424-5.
    Description: The sinking of organic particles produced in the upper sunlit layers of the ocean forms an important limb of the oceanic biological pump, which impacts the sequestration of carbon and resupply of nutrients in the mesopelagic ocean. Particles raining out from the upper ocean undergo remineralization by bacteria colonized on their surface and interior, leading to an attenuation in the sinking flux of organic matter with depth. Here, we formulate a mechanistic model for the depth-dependent, sinking, particulate mass flux constituted by a range of sinking, remineralizing particles. Like previous studies, we find that the model does not achieve the characteristic ‘Martin curve’ flux profile with a single type of particle, but instead requires a distribution of particle sizes and/or properties. We consider various functional forms of remineralization appropriate for solid/compact particles, and aggregates with an anoxic or oxic interior. We explore the sensitivity of the shape of the flux vs. depth profile to the choice of remineralization function, relative particle density, particle size distribution, and water column density stratification, and find that neither a power-law nor exponential function provides a definitively superior fit to the modeled profiles. The profiles are also sensitive to the time history of the particle source. Varying surface particle size distribution (via the slope of the particle number spectrum) over 3 days to represent a transient phytoplankton bloom results in transient subsurface maxima or pulses in the sinking mass flux. This work contributes to a growing body of mechanistic export flux models that offer scope to incorporate underlying dynamical and biological processes into global carbon cycle models.
    Description: We thank NSF (OCE 1260080), NASA (NNX16AR48G), and the Ministry of Earth Sciences, Government of India (Monsoon Mission Project on the Bay of Bengal) for support. This work was largely done in 2012 while MMO was a postdoctoral associate at WHOI, during a visit by RG supported by The Mary Sears visiting scholar program to the Woods Hole Oceanographic Institution. Thanks also to Benjamin Hodges for many thoughtful contributions.
    Repository Name: Woods Hole Open Access Server
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  • 9
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    How spice is stirred in the Bay of Bengal (2021)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(9), (2020): 2669-2688, doi:10.1175/JPO-D-19-0077.1
    Description: The scale-dependent variance of tracer properties in the ocean bears the imprint of the oceanic eddy field. Anomalies in spice (which combines anomalies in temperature T and salinity S on isopycnal surfaces) act as passive tracers beneath the surface mixed layer (ML). We present an analysis of spice distributions along isopycnals in the upper 200 m of the ocean, calculated with over 9000 vertical profiles of T and S measured along ~4800 km of ship tracks in the Bay of Bengal. The data are from three separate research cruises—in the winter monsoon season of 2013 and in the late and early summer monsoon seasons of 2015 and 2018. We present a spectral analysis of horizontal tracer variance statistics on scales ranging from the submesoscale (~1 km) to the mesoscale (~100 km). Isopycnal layers that are closer to the ML-base exhibit redder spectra of tracer variance at scales ≲10 km than is predicted by theories of quasigeostrophic turbulence or frontogenesis. Two plausible explanations are postulated. The first is that stirring by submesoscale motions and shear dispersion by near-inertial waves enhance effective horizontal mixing and deplete tracer variance at horizontal scales ≲10 km in this region. The second is that the spice anomalies are coherent with dynamical properties such as potential vorticity, and not interpretable as passively stirred.
    Description: We are grateful to the captain and crew of the R/V Roger Revelle and the R/V Thomas G. Thompson, and all ASIRI-OMM and MISO-BOB scientists. We thank Prof. Andrew Thompson and an anonymous reviewer for suggestions that improved the manuscript. This work was carried out under the Office of Naval Research’s Air-Sea Interaction Regional Initiative (ASIRI) and Monsoon Intra-Seasonal Oscillations in the Bay of Bengal (MISO-BOB) research initiatives, in collaboration with the Indian Ministry of Earth Science’s Ocean Mixing and Monsoons (OMM) initiative supported by the Monsoon Mission. Support came from ONR Grants N00014-16-1-2470, N00014-13-1-0451, N00014-17-1-2390 (G.S.J. and A.M.), N00014-14-1-0455 (J.M. and J.N), N00014-17-1-2511 (J.M.), N00014-13-1-0489, N00014-17-1-2391 (A.L.), N00014-15-1-2634 (E.S.), N00014-13-1-0456, N00014-17-1-2355 (A.T.), and N00014-13-1-0453, N00014-17-1-2880 (J.F.).
    Description: 2021-02-28
    Keywords: Ocean dynamics ; Thermocline ; Water masses/storage ; In situ oceanic observations ; Tracers ; Spectral analysis/models/distribution
    Repository Name: Woods Hole Open Access Server
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  • 10
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    Diversity of growth rates maximizes phytoplankton productivity in an eddying ocean (2022)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2022. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 49, (2022): e2021GL096180, https://doi.org/10.1029/2021gl096180.
    Description: In the subtropical gyres, phytoplankton rely on eddies for transporting nutrients from depth to the euphotic zone. But, what controls the rate of nutrient supply for new production? We show that vertical nutrient flux both depends on the vertical motion within the eddying flow and varies nonlinearly with the phytoplankton growth rate. Flux is maximized when the growth rate matches the inverse of the decorrelation timescale for vertical motion. Using a three-dimensional ocean model and a linear nutrient uptake model, we find that phytoplankton productivity is maximized for a growth rate of 1/3 day−1, which corresponds to the timescale of submesoscale dynamics. Variability in the frequency of vertical motion across different physical features of the flow favors phytoplankton production with different growth rates. Such a growth-transport feedback can generate diversity in the phytoplankton community structure at submesoscales and higher net productivity in the presence of community diversity.
    Description: MAF and AM were funded by N00014-16-1-3130 (ONR) and MAF was also supported by the Martin Fellowship, MIT.
    Description: 2022-07-20
    Keywords: Vertical velocity ; Nutrient supply ; Phytoplankton growth ; Diversity ; New production
    Repository Name: Woods Hole Open Access Server
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