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  • 1
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    UCTD and EcoCTD Observations from the CALYPSO Pilot Experiment (2018): Cruise and Data Report (2019)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-25
    Description: From May 27, 2018 to June 02, 2018, a scientific campaign was conducted in the Alboran Sea as part of an ONR Departmental Research Initiative, CALYPSO. The pilot cruise involved two ships: the R/V Socib, tasked with sampling fixed lines repeatedly, and the NRV Alliance that surveyed along the trajectory of Lagrangian platforms. A large variety of assets were deployed from the NRV Alliance, with the objective to identify coherent Lagrangian pathways from the surface ocean to interior. As part of the field campaign, an Underway-CTD (UCTD) system was used to measure vertical profiles of salinity, temperature and other properties while steaming, to achieve closely spaced measurements in the horizontal along the ship's track. Both a UCTD probe and an biooptically augmented probe, named EcoCTD, were deployed. The EcoCTD collects concurrent physical and bio-optical observations. This report focuses exclusively on the data collected by these two underway systems. It describes th e datasets collected during the pilot cruise, as well as the important processing steps developed for the EcoCTD.
    Description: Funding was provided by the Office of Naval Research under Contract #N000141613130
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
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  • 2
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    Submesoscale processes at shallow salinity fronts in the Bay of Bengal : observations during the winter monsoon (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 479-509, doi:10.1175/JPO-D-16-0283.1.
    Description: Lateral submesoscale processes and their influence on vertical stratification at shallow salinity fronts in the central Bay of Bengal during the winter monsoon are explored using high-resolution data from a cruise in November 2013. The observations are from a radiator survey centered at a salinity-controlled density front, embedded in a zone of moderate mesoscale strain (0.15 times the Coriolis parameter) and forced by winds with a downfront orientation. Below a thin mixed layer, often ≤10 m, the analysis shows several dynamical signatures indicative of submesoscale processes: (i) negative Ertel potential vorticity (PV); (ii) low-PV anomalies with O(1–10) km lateral extent, where the vorticity estimated on isopycnals and the isopycnal thickness are tightly coupled, varying in lockstep to yield low PV; (iii) flow conditions susceptible to forced symmetric instability (FSI) or bearing the imprint of earlier FSI events; (iv) negative lateral gradients in the absolute momentum field (inertial instability); and (v) strong contribution from differential sheared advection at O(1) km scales to the growth rate of the depth-averaged stratification. The findings here show one-dimensional vertical processes alone cannot explain the vertical stratification and its lateral variability over O(1–10) km scales at the radiator survey.
    Description: S. Ramachandran acknowledges support from the National Science Foundation through award OCE 1558849 and the U.S. Office of Naval Research, Grants N00014-13-1-0456 and N00014-17- 1-2355. A. Tandon acknowledges support from the U.S. Office of Naval Research, Grants N00014-13-1-0456 and N00014-17-1-2355. J. T. Farrar and R. A. Weller were supported by the U.S. Office of Naval Research, Grant N00014-13-1-0453, to collect the UCTD data and process theUCTD and shipboard meteorological data. J. Nash, J. Mackinnon, and A. F. Waterhouse acknowledge support from the U. S. Office of Naval Research, Grants N00014-13-1-0503 and N00014-14-1-0455. E. Shroyer acknowledges support from the U. S. Office of Naval Research, Grants N00014-14-10236 and N00014-15- 12634. A. Mahadevan acknowledges support fromthe U. S. Office of Naval Research, Grant N00014-13-10451. A. J. Lucas and R. Pinkel acknowledge support from the U. S. Office of Naval Research, Grant N00014-13-1-0489.
    Description: 2018-08-26
    Keywords: Indian Ocean ; Baroclinic flows ; Potential vorticity ; Fronts ; Monsoons ; Oceanic mixed layer
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
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    Flow-induced channelization in a porous medium (2012)
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    Publication Date: 2022-05-25
    Description: Author Posting. © Europhysics Letters Association, 2012. This is the author's version of the work. It is posted here by permission of Europhysics Letters Association for personal use, not for redistribution. The definitive version was published in EPL (Europhysics Letters) 98 (2012): 58003, doi:10.1209/0295-5075/98/58003.
    Description: Flow through a saturated, granular, porous medium can lead to internal erosion, preferential flow enhancement and the formation of channels within the bulk of the medium. We examine this phenomenon using a combination of experimental observations, continuum theory and numerical simulations in a minimal setting. Our experiments are carried out by forcing water through a Hele-Shaw cell packed with bidisperse grains. When the local fluid flow-induced stress exceeds a critical threshold, the smaller grains are dislodged and transported, thus changing the porosity of the medium and thence the local hydraulic conductivity and the development of erosional channels. The erosion is ultimately arrested due to the drop in the mean pressure gradient, while most of the flow occurs through the channels. These observations are consistent with a simple theoretical model for channelization in terms of a macroscopic multiphase description of erosion. We model a dynamical porosity field that evolves along with the volume fraction of the mobile and immobile grains in response to fluid flow. Numerical solutions of the resulting initial boundary value problem yield results for the dynamics and morphology that are in qualitative agreement with our experiments. In addition to providing a basis for channelization in porous media, our study highlights how heterogeneity in porous media may arise from flow as a function of the erosion threshold, and thus potentially offers the ability to control channelization.
    Description: We thank DOE NICCR (AM, AK), Harvard-NSF MRSEC (LM) and the MacArthur Foundation for partial support.
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 4
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    Large-scale alignment of oceanic nitrate and density (2014)
    John Wiley & Sons
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 118 (2013): 5322–5332, doi:10.1002/jgrc.20379.
    Description: By analyzing global data, we find that over large scales, surfaces of constant nitrate are often better aligned with isopycnals than with isobars, particularly below the euphotic zone. This is unexplained by the movement of isopycnal surfaces in response to eddies and internal waves, and is perhaps surprising given that the biological processes that alter nitrate distributions are largely depth dependent. We provide a theoretical framework for understanding the orientation of isonitrate surfaces in relation to isopycnals. In our model, the nitrate distribution results from the balance between depth-dependent biological processes (nitrate uptake and remineralization), and the along-isopycnal homogenization of properties by eddy fluxes (parameterized by eddy diffusivity). Where the along-isopycnal eddy diffusivity is relatively large, nitrate surfaces are better aligned with isopycnals than isobars. We test our theory by estimating the strength of the eddy diffusivity and biological export production from global satellite data sets and comparing their contributions. Indeed, we find that below the euphotic zone, the mean isonitrate surfaces are oriented along isopycnals where the isopycnal eddy diffusivity is large, and deviate where the biological export of organic matter is relatively strong. Comparison of nitrate data from profiling floats in different regions corroborates the hypothesis by showing variations in the nitrate-density relationship from one part of the ocean to another.
    Description: We acknowledge the support of the National Science Foundation (Grant OCE-0928617) and NASA (Grant NNX- 08AL80G).
    Description: 2014-04-15
    Keywords: Nitrate ; Export ; Mixing ; Isopycnal ; Alignment ; Large-scale
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
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    Linear stability analysis for monami in a submerged seagrass bed (2016)
    Cambridge University Press
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    Publication Date: 2022-05-25
    Description: © Cambridge University Press, 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Fluid Mechanics 786 (2016): R1, doi:10.1017/jfm.2015.642.
    Description: The onset of monami – the synchronous waving of seagrass beds driven by a steady flow – is modelled as a linear instability of the flow. Unlike previous works, our model considers the drag exerted by the grass in establishing the steady flow profile, and in damping out perturbations to it. We find two distinct modes of instability, which we label modes 1 and 2. Mode 1 is closely related to Kelvin–Helmholtz instability modified by vegetation drag, whereas mode 2 is unrelated to Kelvin–Helmholtz instability and arises from an interaction between the flow in the vegetated and unvegetated layers. The vegetation damping, according to our model, leads to a finite threshold flow for both of these modes. Experimental observations for the onset and frequency of waving compare well with model predictions for the instability onset criteria and the imaginary part of the complex growth rate respectively, but experiments lie in a parameter regime where the two modes can not be distinguished.
    Description: M.M.B. was supported by the Collective Interactions Unit, OIST Graduate University, while visiting Brown University. A.M. was supported by NSF 1131393.
    Keywords: Coastal engineering ; Geophysical and geological flows ; Instability
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
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    Production and destruction of eddy kinetic energy in forced submesoscale eddy-resolving simulations (2016)
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ocean Modelling 105 (2016): 44-59, doi:10.1016/j.ocemod.2016.07.002.
    Description: We study the production and dissipation of the eddy kinetic energy (EKE) in a submesoscale eddy field forced with downfront winds using the Process Study Ocean Model (PSOM) with a horizontal grid resolution of 0.5 km. We simulate an idealized 100 m deep mixed-layer front initially in geostrophic balance with a jet in a domain that permits eddies within a range of O(1km–100 km). The vertical eddy viscosities and the dissipation are parameterized using four different subgrid vertical mixing parameterizations: the k−ϵ,k−ϵ, the KPP, and two different constant eddy viscosity and diffusivity profiles with a magnitude of O(10−2m2s−1) in the mixed layer. Our study shows that strong vertical eddy viscosities near the surface reduce the parameterized dissipation, whereas strong vertical eddy diffusivities reduce the lateral buoyancy gradients and consequently the rate of restratification by mixed-layer instabilities (MLI). Our simulations show that near the surface, the spatial variability of the dissipation along the periphery of the eddies depends on the relative alignment of the ageostrophic and geostrophic shear. Analysis of the resolved EKE budgets in the frontal region from the simulations show important similarities between the vertical structure of the EKE budget produced by the k−ϵk−ϵ and KPP parameterizations, and earlier LES studies. Such an agreement is absent in the simulations using constant eddy-viscosity parameterizations.
    Description: This research was supported by the Office of Naval Research Grant (N00014-09-1-0196).
    Description: 2018-07-16
    Keywords: Submesoscale ; Mixed layer ; Dissipation ; Eddies ; Restratification ; Vertical mixing
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 7
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    Pump it Up workshop report (2017)
    Woods Hole Oceanographic Institution
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    Publication Date: 2022-05-25
    Description: Workshop held 28-29 September 2017, Cape Cod, MA
    Description: A two-day workshop was conducted to trade ideas and brainstorm about how to advance our understanding of the ocean’s biological pump. The goal was to identify the most important scientific issues that are unresolved but might be addressed with new and future technological advances.
    Keywords: Biological pump
    Repository Name: Woods Hole Open Access Server
    Type: Working Paper
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  • 8
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    Reconstructing the ocean's interior from surface data (2013)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2013. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 43 (2013): 1611–1626, doi:10.1175/JPO-D-12-0204.1.
    Description: A new method is proposed for extrapolating subsurface velocity and density fields from sea surface density and sea surface height (SSH). In this, the surface density is linked to the subsurface fields via the surface quasigeostrophic (SQG) formalism, as proposed in several recent papers. The subsurface field is augmented by the addition of the barotropic and first baroclinic modes, whose amplitudes are determined by matching to the sea surface height (pressure), after subtracting the SQG contribution. An additional constraint is that the bottom pressure anomaly vanishes. The method is tested for three regions in the North Atlantic using data from a high-resolution numerical simulation. The decomposition yields strikingly realistic subsurface fields. It is particularly successful in energetic regions like the Gulf Stream extension and at high latitudes where the mixed layer is deep, but it also works in less energetic eastern subtropics. The demonstration highlights the possibility of reconstructing three-dimensional oceanic flows using a combination of satellite fields, for example, sea surface temperature (SST) and SSH, and sparse (or climatological) estimates of the regional depth-resolved density. The method could be further elaborated to integrate additional subsurface information, such as mooring measurements.
    Description: JW and AM were supported by NASA (NNX12AD47G) and NSF (OCE 0928617). JLM was supported by the Office of Naval Research and the Office of Science (BER), U.S. Department of Energy under DE-GF0205ER64119. GRF is supported by OCE-0752346 and JHL by NORSEE (Nordic Seas Eddy Exchanges) funded by the Norwegian Research Council.
    Description: 2014-02-01
    Keywords: Eddies ; Ocean dynamics ; Potential vorticity ; Surface pressure ; Surface temperature ; Inverse methods
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
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    Enhancement in vertical fluxes at a front by mesoscale-submesoscale coupling (2015)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 119 (2014): 8495–8511, doi:10.1002/2014JC010211.
    Description: Oceanic frontal instabilities are of importance for the vertical exchange of properties in the ocean. Submesoscale, O(1) Rossby number, dynamics are particularly relevant for inducing the vertical (and lateral) flux of buoyancy and tracers in the mixed layer, but how these couple with the stratified pycnocline is less clear. Observations show surface fronts often persist beneath the mixed layer. Here we use idealized, three-dimensional model simulations to show how surface fronts that extend deeper into the pycnocline invoke enhanced vertical fluxes through the coupling of submesoscale and mesoscale instabilities. We contrast simulations in which the front is restricted to the mixed layer with those in which it extends deeper. For the deeper fronts, we examine the effect of density stratification on the vertical coupling. Our results show deep fronts can dynamically couple the mixed layer and pycnocline on time scales that increase with the peak stratification beneath the mixed layer. Eddies in the interior generate skew fluxes of buoyancy and tracer oriented along isopycnals, thus providing an adiabatic pathway for the interior to interact with the mixed layer at fronts. The vertical enhancement of tracer fluxes through the mesoscale-submesoscale coupling described here is thus relevant to the vertical supply of nutrients for phytoplankton in the ocean. A further implication for wind-forced fronts is that the vertical structure of the stream function characterizing the exchange between the interior and the mixed layer exhibits significant qualitative differences compared to a linear combination of existing parameterizations of submesoscale eddies in the mixed layer and mesoscale eddies in the interior. The discrepancies are most severe within the mixed layer suggesting a potential role for Ekman-layer dynamics absent in existing submesoscale parameterizations.
    Description: S.R. and A.T. acknowledge financial support from the National Science Foundation (NSF OCE-0928138) and the Office of Naval Research (ONR N00014-09-1-0196, ONR N00014-12-1-0101). A.M. acknowledges funding from the National Science Foundation (NSF OCE-0928617) and the Office of Naval Research (ONR N00014-12-1-0101).
    Description: 2015-06-11
    Keywords: Submesoscale ; Mixed layer ; Meso-submeso coupling ; Deep fronts
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 10
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    The shape of the oceanic nitracline (2015)
    Copernicus Publications on behalf of the European Geosciences Union
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 12 (2015): 3273-3287, doi:10.5194/bg-12-3273-2015.
    Description: In most regions of the ocean, nitrate is depleted near the surface by phytoplankton consumption and increases with depth, exhibiting a strong vertical gradient in the pycnocline (here referred to as the nitracline). The vertical supply of nutrients to the surface euphotic zone is influenced by the vertical gradient (slope) of the nitracline and by the vertical separation (depth) of the nitracline from the sunlit surface layer. Hence it is important to understand the shape (slope and curvature) and depth of the oceanic nitracline. By using density coordinates to analyze nitrate profiles from autonomous Autonomous Profiling EXplorer floats with In-Situ Ultraviolet Spectrophotometers (APEX-ISUS) and ship-based platforms (World Ocean Atlas – WOA09; Hawaii Ocean Time-series – HOT; Bermuda Atlantic Time-series Study – BATS; and California Cooperative Oceanic Fisheries Investigations – CalCOFI), we are able to eliminate much of the spatial and temporal variability in the profiles and derive robust relationships between nitrate and density. This allows us to characterize the depth, slope and curvature of the nitracline in different regions of the world's oceans. The analysis reveals distinguishing patterns in the nitracline between subtropical gyres, upwelling regions and subpolar gyres. We propose a one-dimensional, mechanistic model that relates the shape of the nitracline to the relative depths of the surface mixed layer and euphotic layer. Though heuristic, the model accounts for some of the seasonal patterns and regional differences in the nitrate–density relationships seen in the data.
    Description: We acknowledge the support of the National Science Foundation (Grant OCE-0928617) and NASA (Grant NNX-08AL80G).
    Repository Name: Woods Hole Open Access Server
    Type: Article
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