Description: Continental shelves are predominately (~70%) covered with permeable, sandy sediments. While identified as critical sites for intense oxygen, carbon, and nutrient turnover, constituent exchange across permeable sediments remains poorly quantified. The central North Sea largely consists of permeable sediments and has been identified as increasingly at risk for developing hypoxia. Therefore, we investigate the benthic O2 exchange across the permeable North Sea sediments using a combination of in situ microprofiles, a benthic chamber, and aquatic eddy correlation. Tidal bottom currents drive the variable sediment O2 penetration depth (from ~3 to 8 mm) and the concurrent turbulence-driven 25-fold variation in the benthic sediment O2 uptake. The O2 flux and variability were reproduced using a simple 1-D model linking the benthic turbulence to the sediment pore water exchange. The high O2 flux variability results from deeper sediment O2 penetration depths and increased O2 storage during high velocities, which is then utilized during low-flow periods. The study reveals that the benthic hydrodynamics, sediment permeability, and pore water redox oscillations are all intimately linked and crucial parameters determining the oxygen availability. These parameters must all be considered when evaluating mineralization pathways of organic matter and nutrients in permeable sediments.

Description: The upwelling area off North-West Africa is characterized by high export production, high nitrate and low oxygen concentration in bottom waters. The underlying sediment consists of sands that cover most of the continental shelf. Due to their permeability sands allow for fast advective pore water transport and can exhibit high rates of nitrogen (N) loss via denitrification as reported for anthropogenically eutrophied regions. However, N loss from sands underlying naturally eutrophied waters is not well studied, and in particular, N loss from the North-West African shelf is poorly constrained. During two research cruises in April/May 2010/2011, sediment was sampled along the North-West African shelf and volumetric denitrification rates were measured in sediment layers down to 8 cm depth using slurry incubations with 15N-labeled nitrate. Areal N loss was calculated by integrating volumetric rates down to the nitrate penetration depth derived from pore water profiles. Areal N loss was neither correlated with water depth nor with bottom water concentrations of nitrate and oxygen but was strongly dependent on sediment grain size and permeability. The derived empirical relation between benthic N loss and grains size suggests that pore water advection is an important regulating parameter for benthic denitrification in sands and further allowed extrapolating rates to an area of 53,000 km2 using detailed sediment maps. Denitrification from this region amounts to 995 kt yr-1 (average 3.6 mmol m-2 d-1) which is 4 times higher than previous estimates based on diffusive pore water transport. Sandy sediments cover 50-60% of the continental shelf and thus may contribute significantly to the global benthic N loss.

Description: As part of the large-scale, interdisciplinary deep-sea study “BIGSET”, the relationship between the monsoon-induced regional and temporal variability of POC deposition and the small-sized benthic community was investigated at several sites 2316–4420 m deep in the Arabian Sea during four cruises between 1995 and 1998. Vertical and horizontal distribution patterns of chloroplastic pigments (a measure of phytodetritus deposition), readily soluble protein and activity, and biomass parameters of the small-sized benthic community (Electron Transport System Activity (ETSA); bacterial ectoenzymatic activity (FDA turnover) and DNA concentrations) were measured concurrently with the vertical fluxes of POC and chloroplastic pigments. Sediment chlorophyll a (chl. a) profiles were used to calculate chl. a flux rates and to estimate POC flux across the sediment water interface using two different transport reaction models. These estimates were compared with corresponding flux rates determined in sediment traps. Regional variability of primary productivity and POC deposition at the deep-sea floor creates a trophic gradient in the Arabian Basin from the NW to the SE, which is primarily related to the activity of monsoon winds and processes associated with the topography of the Arabian Basin and the vicinity of land masses. Inventories of sediment chloroplastic pigments closely corresponded to this trophic gradient. For ETSA, FDA and DNA, however, no clear coupling was found, although stations WAST (western Arabian Sea) and NAST (northern Arabian Sea) were characterised by high concentrations and activities. These parameters exhibited high spatial and temporal variability, making it impossible to recognise clear mechanisms controlling temporal and spatial community patterns of the small-sized benthic biota. Nevertheless, the entire Arabian Basin was recognised as being affected by monsoonal activity. Comparison of two different transport reaction models indicates that labile chl. a buried in deeper sediment layers may escape rapid degradation in Arabian deep-sea sediments.

Description: Effects of monsoon-induced enhanced depositional regimes of particulate organic carbon (POC) on regional variability and distribution patterns and size spectra of metazoan meiofauna, particularly of nematodes, were investigated at five sites 3158–4414 m deep in the Arabian Sea. The sampling sites were subjected to different flux rates of POC. Total meiofaunal abundance ranged from 109 to 320 ind./10 cm2. Nematodes were the numerically most abundant taxon, with a relative abundance of 82.5–88.7%, followed by copepods and ostracods. Mean individual nematode biomass ranged from 0.0272 to 0.1033 μgC, and Mean nematode population biomass varied between 0.0026 and 0.0133 mgC/10 cm2. Mean nematode lengths ranged from 614.2 to 832.6 μm. The length distributions of nematodes at the different sites were typically skewed with the distributions extending into the longer size classes. At the sites with higher POC deposition rates, nematodes displayed deeper distributions in the sediment column (47.4–58.5% of nematodes in the top 1 cm layer of the sediment) in contrast to very shallow distributions at a site of low POC flux (75.1% of nematodes in the top 1 cm of the sediment). Regional variability of nematode biomass, size and vertical distribution was related to monsoon-driven gradients of POC- and chlorophyll a (chl. a) flux rates and bacterial biomass i.e. bioavailable organic carbon. This was in contrast to nematode abundance which did not correlate significantly with any of these environmental parameters. The differential pattern between biomass and abundance, distribution might be related to POC-dependent alterations in the species composition of the nematode assemblages at the different sites. The hypothesis of increased meiobenthic stocks due to monsoon-induced enhanced sedimentation could not be confirmed compared to data from other less productive oceanic regions. Nematode abundance and biomass in the Arabian Sea were similar to values obtained from the abyssal temperate NE-Atlantic.

Description: An extensive data set of biogenic silica (BSi) fluxes is presented for the Peruvian oxygen minimum zone (OMZ) at 11ºS and 12ºS. Each transect extends from the shelf to the upper slope (∼1000 m) and dissects the permanently anoxic waters between ∼200 – 500m water depth. BSi burial (2100 mmol m‐2 yr‐1) and recycling fluxes (3300 mmol m‐2 yr‐1) were highest on the shelf with mean preservation efficiencies (34±15%) that exceed the global mean of 10 – 20%. BSi preservation was highest on the inner shelf (up to 56%), decreasing to 7% and 12% under anoxic waters and below the OMZ, respectively. The data suggest that the main control on BSi preservation is the rate at which reactive BSi is transported away from undersaturated surface sediments by burial and bioturbation to the underlying saturated sediment layers where BSi dissolution is thermodynamically and/or kinetically inhibited. BSi burial across the entire Peruvian margin between 3ºS to 15ºS and down to 1000m water depth is estimated to be 0.1 – 0.2 Tmol yr‐1; equivalent to 2 – 7% of total burial on continental margins. Existing global data permit a simple relationship between BSi rain rate to the seafloor and the accumulation of unaltered BSi, giving the possibility to reconstruct rain rates and primary production from the sediment archive in addition to benthic Si turnover in global models.

Description: Bacterial sulfate reduction (SR) is often determined by radiotracer techniques using 35S‐labeled sulfate. In environments featuring simultaneous sulfide oxidation, SR can be underestimated due to re‐oxidation of 35S‐sulfide. Recycling of 35S‐tracer is expected to be high in sediment with low concentrations of pore‐water sulfide and high abundance of giant filamentous sulfur‐oxidizing bacteria (GFSOB). Here, we applied a sulfide‐spiking method, originally developed for water samples, to sediments along a shelf‐slope transect (72, 128, 243, 752 m water depth) traversing the Peruvian oxygen minimum zone. Sediment spiked with unlabeled sulfide prior to 35S‐sulfate injection to prevent radiotracer recycling was compared to unspiked sediment. At stations characterized by low natural sulfide and abundant GFSOB (128 and 243 m), the method revealed 1–3 times higher SR rates in spiked sediment. Spiking had no effect on SR in sediment with high natural sulfide despite presence of GFSOB (72 m). Bioturbated sediment devoid of GFSOB (752 m) showed elevated SR in spiked samples, likely from artificial introduction of sulfidic conditions. Sulfide oxidation rates at the 128 and 243 m station, derived from the difference in SR between spiked and unspiked sediment, approximated rates of dissimilatory nitrate reduction to ammonium by GFSOB. Gross SR contributed considerably to benthic dissolved inorganic carbon fluxes at the three shallowest station, confirming that SR is an important process for benthic carbon respirations within the oxygen minimum zone. We recommend to further explore the spiking method to capture SR in sediment featuring low sulfide concentrations and high sulfur cycling by GFSOB.