Description: The Ocean Model Intercomparison Project (OMIP) focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6). OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations) vs. when integrated within fully coupled Earth system models (CMIP6). Here we detail simulation protocols and diagnostics for OMIP's biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948–2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF6) and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen). Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1) will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup) will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, CTabio and 14CTabio, to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation protocols are founded on those from previous phases of the Ocean Carbon-Cycle Model Intercomparison Project. They have been merged and updated to reflect improvements concerning gas exchange, carbonate chemistry, and new data for initial conditions and atmospheric gas histories. Code is provided to facilitate their implementation.

Description: The replenishment of consumed oxygen in the open ocean oxygen minimum zone (OMZ) off northwest Africa is accomplished by oxygen transport across and along density surfaces, i.e. diapycnal and isopycnal oxygen supply. Here the diapycnal oxygen supply is investigated using a large observational set of oxygen profiles and diapycnal mixing data from years 2008 to 2010. Diapycnal mixing is inferred from different sources: (i) a large-scale tracer release experiment, (ii) microstructure profiles, and (iii) shipboard acoustic current measurements plus density profiles. From these measurements, the average diapycnal diffusivity in the studied depth interval from 150 to 500m is estimated to be 1×10−5 m2 s−1, with lower and upper 95%confidence limits of 0.8×10−5 m2 s−1 and 1.4×10−5 m2 s−1. Diapycnal diffusivity in this depth range is predominantly caused by turbulence, and shows no significant vertical gradient. Diapycnal mixing is found to contribute substantially to the oxygen supply of the OMZ. Within the OMZ core, 1.5 μmol kg−1 yr−1 of oxygen is supplied via diapycnal mixing, contributing about one-third of the total demand. This oxygen which is supplied via diapycnal mixing originates from oxygen that has been laterally supplied within the upper CentralWater layer above the OMZ, and within the Antarctic Intermediate Water layer below the OMZ. Due to the existence of a separate shallow oxygen minimum at about 100m depth throughout most of the study area, there is no net vertical oxygen flux from the surface layer into the Central Water layer. Thus all oxygen supply of the OMZ is associated with remote pathways.

Description: The Mediterranean Sea is a semi-enclosed sea characterized by high salinities, temperatures and densities. The net evaporation exceeds the precipitation, driving an anti-estuarine circulation through the Strait of Gibraltar, contributing to very low nutrient concentrations. The Mediterranean Sea has an active overturning circulation, one shallow cell that communicates directly with the Atlantic Ocean, and two deep overturning cells, one in each of the two main basins. It is surrounded by populated areas and is thus sensitive to anthropogenic forcing. Several dramatic changes in the oceanographic and biogeochemical conditions have been observed during the past several decades, emphasizing the need to better monitor and understand the changing conditions and their drivers. During 2011 three oceanographic cruises were conducted in a coordinated fashion in order to produce baseline data of important physical and biogeochemical parameters that can be compared to historic data and be used as reference for future observational campaigns. In this article we provide information on the Mediterranean Sea oceanographic situation, and present a short review that will serve as background information for the special issue in Ocean Science on "Physical, chemical and biological oceanography of the Mediterranean Sea". An important contribution of this article is the set of figures showing the large-scale distributions of physical and chemical properties along the full length

Description: The Mediterranean Sea (MedSea) is considered a "laboratory basin" being an ocean in miniature, suffering dramatic changes in its oceanographic and biogeochemical conditions derived from natural and anthropogenic forces. Moreover, the MedSea is prone to absorb and store anthropogenic carbon due to the particular CO2 chemistry and the active overturning circulation. Despite this, water column CO2 measurements covering the whole basin are scarce. This work aims to be a base-line for future studies about the CO2 system space-time variability in the MedSea combining historic and modern CO2 cruises in the whole area. Here we provide an extensive vertical and longitudinal description of the CO2 system variables (total alkalinity – TA, dissolved inorganic carbon – DIC and pH) along an East-West transect and across the Sardinia-Sicily passage in the MedSea from two oceanographic cruises conducted in 2011 measuring CO2 variables in a coordinated fashion, the RV Meteor M84/3 and the RV Urania EuroFleets 11, respectively. In this sense, we provide full-depth and length CO2 distributions across the MedSea, and property-property plots showing in each sub-basin post-Eastern Mediterranean Transient (EMT) situation with regard to TA, DIC and pH. The over-determined CO2 system in 2011 allowed performing the first internal consistency analysis for the particularly warm, high salinity and alkalinity MedSea waters. The CO2 constants by Mehrbach et al. (1973) refitted by Dickson and Millero (1987) are recommended. The sensitivity of the CO2 system to the atmospheric CO2 increase, DIC and/or TA changes is evaluated by means of the Revelle and buffer factors.

Description: Ventilation is the primary pathway for atmosphere–ocean boundary perturbations, such as temperature anomalies, to be relayed to the ocean interior. It is also a conduit for gas exchange between the interface of atmosphere and ocean. Thus it is a mechanism whereby, for instance, the ocean interior is oxygenated and enriched in anthropogenic carbon. The ventilation of the Mediterranean Sea is fast in comparison to the world ocean and has large temporal variability. Here we present transient tracer data from a field campaign in April 2011 that sampled a unique suite of transient tracers (SF6, CFC-12, 3H and 3He) in all major basins of the Mediterranean. We apply the transit time distribution (TTD) model to the data in order to constrain the mean age, the ratio of the advective / diffusive transport and the number of water masses significant for ventilation. We found that the eastern part of the eastern Mediterranean can be reasonably described with a one-dimensional inverse Gaussian TTD (IG-TTD), and thus constrained with two independent tracers. The ventilation of the Ionian Sea and the western Mediterranean can only be constrained by a linear combination of IG-TTDs. We approximate the ventilation with a one-dimensional, two inverse Gaussian TTD (2IG-TTD) for these areas and demonstrate a possibility of constraining a 2IG-TTD from the available transient tracer data. The deep water in the Ionian Sea has a mean age between 120 and 160 years and is therefore substantially older than the mean age of the Levantine Basin deep water (60–80 years). These results are in contrast to those expected by the higher transient tracer concentrations in the Ionian Sea deep water. This is partly due to deep water of Adriatic origin having more diffusive properties in transport and formation (i.e., a high ratio of diffusion over advection), compared to the deep water of Aegean Sea origin that still dominates the deep Levantine Basin deep water after the Eastern Mediterranean Transient (EMT) in the early 1990s. The tracer minimum zone (TMZ) in the intermediate of the Levantine Basin is the oldest water mass with a mean age up to 290 years. We also show that the deep western Mediterranean has contributed approximately 40% of recently ventilated deep water from the Western Mediterranean Transition (WMT) event of the mid-2000s. The deep water has higher transient tracer concentrations than the mid-depth water, but the mean age is similar with values between 180 and 220 years.

Description: Ocean observations carried out in the framework of the Collaborative Research Center 754 (SFB 754) "Climate-Biogeochemistry Interactions in the Tropical Ocean" are used to study (1) the structure of tropical oxygen minimum zones (OMZs), (2) the processes that contribute to the oxygen budget, and (3) long-term changes in the oxygen distribution. The OMZ of the eastern tropical North Atlantic (ETNA), located between the well-ventilated subtropical gyre and the equatorial oxygen maximum, is composed of a deep OMZ at about 400 m depth with its core region centred at about 20° W, 10° N and a shallow OMZ at about 100 m depth with lowest oxygen concentrations in proximity to the coastal upwelling region off Mauritania and Senegal. The oxygen budget of the deep OMZ is given by oxygen consumption mainly balanced by the oxygen supply due to meridional eddy fluxes (about 60%) and vertical mixing (about 20%, locally up to 30%). Advection by zonal jets is crucial for the establishment of the equatorial oxygen maximum. In the latitude range of the deep OMZ, it dominates the oxygen supply in the upper 300 to 400 m and generates the intermediate oxygen maximum between deep and shallow OMZs. Water mass ages from transient tracers indicate substantially older water masses in the core of the deep OMZ (about 120–180 years) compared to regions north and south of it. The deoxygenation of the ETNA OMZ during recent decades suggests a substantial imbalance in the oxygen budget: about 10% of the oxygen consumption during that period was not balanced by ventilation. Long-term oxygen observations show variability on interannual, decadal and multidecadal time scales that can partly be attributed to circulation changes. In comparison to the ETNA OMZ the eastern tropical South Pacific OMZ shows a similar structure including an equatorial oxygen maximum driven by zonal advection, but overall much lower oxygen concentrations approaching zero in extended regions. As the shape of the OMZs is set by ocean circulation, the widespread misrepresentation of the intermediate circulation in ocean circulation models substantially contributes to their oxygen bias, which might have significant impacts on predictions of future oxygen levels.

Description: This paper is the outcome of a workshop held in Rome in November 2011 on the occasion of the 25th anniversary of the POEM (Physical Oceanography of the Eastern Mediterranean) program. In the workshop discussions, a number of unresolved issues were identified for the physical and biogeochemical properties of the Mediterranean Sea as a whole, i.e., comprising the Western and Eastern sub-basins. Over the successive two years, the related ideas were discussed among the group of scientists who participated in the workshop and who have contributed to the writing of this paper. Three major topics were identified, each of them being the object of a section divided into a number of different sub-sections, each addressing a specific physical, chemical or biological issue: 1. Assessment of basin-wide physical/biochemical properties, of their variability and interactions. 2. Relative importance of external forcing functions (wind stress, heat/moisture fluxes, forcing through straits) vs. internal variability. 3. Shelf/deep sea interactions and exchanges of physical/biogeochemical properties and how they affect the sub-basin circulation and property distribution. Furthermore, a number of unresolved scientific/methodological issues were also identified and are reported in each sub-section after a short discussion of the present knowledge. They represent the collegial consensus of the scientists contributing to the paper. Naturally, the unresolved issues presented here constitute the choice of the authors and therefore they may not be exhaustive and/or complete. The overall goal is to stimulate a broader interdisciplinary discussion among the scientists of the Mediterranean oceanographic community, leading to enhanced collaborative efforts and exciting future discoveries.

Description: Increasing concentrations of dissolved inorganic carbon (DIC) in the interior ocean is expected as a direct consequence of increasing concentrations of CO2 in the atmosphere. This extra DIC is often referred to as anthropogenic carbon (Cant), and its inventory, or increase rate, in the interior ocean has previously been estimated by a multitude of observational approaches. Each of these methods are associated with hard to test assumptions since Cant cannot be directly observed. Results from a simpler concept with few assumptions applied to the Atlantic Ocean are reported on here using two large data collections of carbon relevant bottle data. The change in column inventory on decadal time scales, i.e. the storage rate, of DIC, respiration compensated DIC and oxygen is calculated for the Atlantic Ocean. The average storage rates for DIC and oxygen is calculated to 0.72 ± 1.22 (95% confidence interval of the mean trend: 0.65–0.78) mol m−2 yr−1 and −0.54 ± 1.64 (95% confidence interval of the mean trend: –0.64–(−0.45)) mol m−2 yr−1, respectively, for the Atlantic Ocean, where the uncertainties reflect station-to-station variability and where the mean trends are non-zero at the 95% confidence level. The standard deviation mainly reflects uncertainty due to regional variations, whereas the confidence interval reflects the mean trend. The storage rates are similar to changes found by other studies, although with large uncertainty. For the subpolar North Atlantic the storage rates show significant temporal variation of all variables. This seems to be due to variations in the prevalence of subsurface water masses with different DIC concentrations leading to sometimes different signs of storage rates for DIC and Cant. This study suggest that accurate assessment of the uptake of CO2 by the oceans will require accounting not only for processes that influence Cant but also additional processes that modify CO2 storage.

Description: Aspects of hydrography and large-scale circulation observed in the Mediterranean Sea during the M84/3 and P414 cruises (April and June 2011, respectively) are presented. In contrast to most of the recent expeditions, which were limited to special areas of the basin, these two cruises, especially the M84/3, offered the opportunity of delineating a quasi-synoptic picture of the distribution of the relevant physical parameters along a section extending through the whole Mediterranean, from the Lebanese coast up to the Strait of Gibraltar. The foci of our analysis are the observed water mass properties and velocity fields. The first are investigated through T–S diagrams and an optimum multiparameter (OMP) analysis and the results are discussed also in the context of recently identified modes of variability; the second are studied by comparing the velocity fields observed using a vessel-mounted Acoustic Doppler Current Profiler and those calculated from the observed density fields. Overall, a distribution of temperature, salinity and geostrophic velocities emerges, which is far from that observed before the beginning of the so-called "Eastern Mediterranean Transient", a major climatic shift in the hydrography and circulation of the Mediterranean Sea which began at the end of the 1980s. The picture which emerges helps to further address the complexity of long-term evolution of hydrography and large-scale circulation of the Mediterranean Sea.

Description: Currently available transient tracers have different application ranges that are defined by their temporal input (chronological transient tracers) or their decay rate (radioactive transient tracers). Transient tracers range from tracers for highly ventilated water masses such as sulfur hexafluoride (SF6) through tritium (3H) and chlorofluorocarbons (CFCs) up to tracers for less ventilated deep ocean basins such as argon-39 (39Ar) and radiocarbon (14C). In this context, highly ventilated water masses are defined as water masses that have been in contact with the atmosphere during the last decade. Transient tracers can be used to empirically constrain the transit time distribution (TTD), which can often be approximated with an inverse Gaussian (IG) distribution. The IG-TTD provides information about ventilation and the advective/diffusive characteristics of a water parcel. Here we provide an overview of commonly used transient tracer couples and the corresponding application range of the IG-TTD by using the new concept of validity areas. CFC-12, CFC-11 and SF6 data from three different cruises in the South Atlantic Ocean and Southern Ocean as well as 39Ar data from the 1980s and early 1990s in the eastern Atlantic Ocean and the Weddell Sea are used to demonstrate this method. We found that the IG-TTD can be constrained along the Greenwich Meridian south to 46° S, which corresponds to the Subantarctic Front (SAF) denoting the application limit. The Antarctic Intermediate Water (AAIW) describes the limiting water layer in the vertical. Conspicuous high or lower ratios between the advective and diffusive components describe the transition between the validity area and the application limit of the IG-TTD model rather than describing the physical properties of the water parcel. The combination of 39Ar and CFC data places constraints on the IG-TTD in the deep water north of the SAF, but not beyond this limit.