GLORIA

GEOMAR Library Ocean Research Information Access

feed icon rss

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2010. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography 25 (2010): PA2211, doi:10.1029/2009PA001846.
    Description: Carbon isotopes of foraminiferal tests provide a widely used proxy for past oceanographic environmental conditions. This proxy can be calibrated using live specimens, which are reliably identified with observations of cell ultrastructure. Observations of ultrastructures can also be used for studies of biological characteristics such as diet and presence of symbionts. Combining biological and isotopic studies on individual foraminifera could provide novel information, but standard isotopic methods destroy ultrastructures by desiccating specimens and observations of ultrastructure require removal of carbonate tests, preventing isotope measurements. The approach described here preserves cellular ultrastructure during isotopic analyses by keeping the foraminifera in an aqueous buffer (Phosphate Buffered Saline (PBS)). The technique was developed and standardized with 36 aliquots of NBS-19 standard of similar weight to foraminiferal tests (5 to 123 μg). Standard errors ranged from ± 0.06 to ± 0.85‰ and were caused by CO2 contaminants dissolved in the PBS. The technique was used to measure δ13C values of 96 foraminifera, 10 of which do not precipitate carbonate tests. Calcareous foraminiferal tests had corrected carbon isotope ratios of −8.5 to +3.2‰. This new technique allows comparisons of isotopic compositions of tests made by foraminifera known to be alive at the time of collection with their biological characteristics such as prey composition and presence or absence of putative symbionts. The approach may be applied to additional biomineralizing organisms such as planktonic foraminifera, pteropods, corals, and coccolithophores to elucidate certain biological controls on their paleoceanographic proxy signatures.
    Description: Support was provided by NSF grants OCE‐0550396 (to J.B.M.), OCE‐0551001 (to J.M.B.), and OCE‐ 0550401 (to A.E.R.).
    Keywords: Foraminifera ; Ultrastructure ; Carbon isotopes
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2006. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography, 21 (2006): PA4210, doi:10.1029/2006PA001290.
    Description: The conventional method to distinguish live from dead benthic foraminifers uses Rose Bengal, a stain that reacts with both live and dead cytoplasm. CellTracker Green CMFDA is a fluorogenic probe causing live cells to fluoresce after proper incubation. To determine the more accurate viability method, we conducted a direct comparison of Rose Bengal staining with CellTracker Green labeling. Eight multicore tops were analyzed from Florida Margin (SE United States; 248-751 m water depths), near Great Bahama Bank (259-766 m), and off the Carolinas (SE United States; 220 m, 920 m). On average, less than half the Rose Bengal-stained foraminifera were actually living when collected. Thus, while Rose Bengal can significantly overestimate abundance, combined analyses of CellTracker Green and Rose Bengal can provide insights on population dynamics and effects of episodic events. Initial stable isotope analyses indicate that the CellTracker Green method does not significantly affect these important paleoceanographic proxies.
    Description: Funding for this research was provided by the National Science Foundation Research Experience for Undergraduates Program (grant #OCE-0139423; PI, D. McCorkle, WHOI) and NSF grants OCE-9911654 and OCE-0351029.
    Keywords: Benthic foraminifera ; Viability assay ; Stable isotopes ; Epifluorescence microscopy
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2006. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 111 (2006): G03002, doi:10.1029/2005JG000158.
    Description: Our current understanding of paleoecology and paleoceanography is largely based on the superb Phanerozoic fossil record of foraminiferan protists. The early history of the group is unresolved, however, because basal foraminiferans (allogromiids) are unmineralized and thus fossilize poorly. Molecular-clock studies date foraminiferal origins to the Neoproterozoic, but the deep sea – one of Earth’s most extensive habitats and presently a significant fraction of basal foraminiferal diversity— was probably anoxic at that time and, until now, anaerobic allogromiids were unknown. Molecular, cell and ecological analyses reveal the presence of a previously unknown allogromiid inhabiting anoxic, sulfidic deep-sea sediments (Santa Barbara Basin, California, USA). The fact that the new foraminifer harbors prokaryotic endobionts implicates symbiogenesis as a driving force in early foraminiferal diversification.
    Description: The Wadsworth Center’s Electron Microscopy, Biochemistry, and Molecular Genetics Core facilities, as well as its National Biotechnology Resource for the Visualization of Biological Complexity (supported by a NIH BRTP/NCRR grant) are gratefully acknowledged. Funded by NASA Exobiology NRA-01-01-EXB-057 (to J.M.B.); W. Storrs Cole Memorial Research Award (Geological Society of America, to J.M.B.); NSF DEB0445181 (to S.S.B.).
    Keywords: Foraminifera ; Santa Barbara Basin ; Symbiosis
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): G03002, doi:10.1029/2012JG001949.
    Description: Until recently, the process of denitrification (conversion of nitrate or nitrite to gaseous products) was thought to be performed exclusively by prokaryotes and fungi. The finding that foraminifera perform complete denitrification could impact our understanding of nitrate removal in sediments as well as our understanding of eukaryotic respiration, especially if it is widespread. However, details of this process and the subcellular location of these reactions in foraminifera remain uncertain. For example, prokaryotic endobionts, rather than the foraminifer proper, could perform denitrification, as has been shown recently in an allogromiid foraminifer. Here, intracellular nitrate concentrations and isotope ratios (δ15NNO3 and δ18ONO3) were measured to assess the nitrate dynamics in four benthic foraminiferal species (Bolivina argentea, Buliminella tenuata, Fursenkoina cornuta, Nonionella stella) with differing cellular architecture and associations with microbial endobionts, recovered from Santa Barbara Basin, California. Cellular nitrate concentrations were high (12–217 mM) in each species, and intracellular nitrate often had elevated δ15NNO3 and δ18ONO3 values. Experiments including suboxic and anoxic incubations of B. argentea revealed a decrease in intracellular nitrate concentration and an increase in δ15NNO3 and δ18ONO3 over time, indicating nitrate respiration and/or denitrification within the foraminifera. Results illustrate that nitrate reduction occurs in a range of foraminiferal species, including some possessing endobionts (including a chloroplast-sequestering species) and others lacking endobionts, implying that microbial associates may not solely be responsible for this process in foraminifera. Furthermore, we show that benthic foraminifera may represent important reservoirs of nitrate storage in sediments, as well as mediators of its removal.
    Description: This research was supported by NSF grant EF-0702491 to JMB, KLC, and VPE.
    Description: 2013-01-03
    Keywords: SSU rRNA ; Santa Barbara Basin ; Denitrification ; NirK ; NirS ; Symbiosis
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 5
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Biogeosciences 124 (2019): 2823-2850, doi:10.1029/2019JG005113.
    Description: Microscopy techniques have been widely applied to observe cellular ultrastructure. Most of these techniques, such as transmission electron microscopy, produce high‐resolution images, but they may require extensive preparation, hampering their application for in vivo examination. Other approaches, such as fluorescent and fluorogenic probes, can be applied not only to fixed specimens but also to living cells when the probes are nontoxic. Fluorescence‐based methods, which are generally relatively easy to use, allow visual and (semi)quantitative studies of the ultrastructural organization and processes of the cell under natural as well as manipulated conditions. To date, there are relatively few published studies on the nearly ubiquitous marine protistan group Foraminifera that have used fluorescent and fluorogenic probes, despite their huge potential. The aim of the present contribution is to document the feasible application of a wide array of these probes to foraminiferal biology. More specifically, we applied fluorescence‐based probes to study esterase activity, cell viability, calcium signaling, pH variation, reactive oxygen species, neutral and polar lipids, lipid droplets, cytoskeleton structures, Golgi complex, acidic vesicles, nuclei, and mitochondria in selected foraminiferal species.
    Description: The authors are very grateful to the Editor‐in‐Chief Miguel Goni and two anonymous reviewers for their thoughtful and valuable comments that have greatly improved the paper. Markus Raitzsch and Karina Kaczmarek from the AWI, Jakub Kordas from the ZOO Wrocław sp. z o. o. (Poland), and Max Janse from The Royal Burgers' Zoo (Arnhem, the Netherlands) are gratefully acknowledged. The authors declare that no competing interests exist. All the data are included within the paper or the supporting information accompanying it. The research for this paper was partially supported by the Ministero dell'Istruzione, dell'Università e della Ricerca (PRIN 2010‐2011 protocollo 2010RMTLYR) to R.C., the Japan Society for the Promotion of Science KAKENHI Grant (Numbers: JP18H06074, JP17H02978, JP19H02009, JP19H03045) to T.T. and Y.N., the WHOI Investment in Science Program to J.M.B, the Polish National Science Center (Grant DEC‐2015/19/B/ST10/01944) J.T. and J.G. and the Kuwait Foundation for the Advancement of Sciences (EM084C) to E.A‐E.
    Description: 2020-02-22
    Keywords: Protist ; Organelles ; Confocal laser scanning microscopy ; Probes ; Foraminifera
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 6
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2010. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography 25 (2010): PA4206, doi:10.1029/2010PA001930.
    Description: Numerous previous studies show disequilibrium between stable carbon isotope ratios of foraminiferal calcite and pore water dissolved inorganic carbon in hydrocarbon seeps, calling into question the utility of this widely used paleoceanographic tracer as a proxy. We use a recently developed method to compare stable carbon isotope ratios of foraminiferal carbonate with cell ultrastructural observations from individual benthic foraminifera from seep (under chemosynthetic bivalves) and nonseep habitats in Monterey Bay, California, to better understand control(s) of benthic foraminiferal carbon isotope ratios. Two attributes previously proposed to cause the isotopic offsets are diet and symbionts. Ultrastructural analysis shows that positive staining with Rose Bengal indicates presence of foraminiferal cytoplasm, bacterial biomass, or a combination of both and, thus, is not an unequivocal indicator of viability. We also show for the first time that some living seep foraminifera have endobionts. Results from our unique, yet limited, data set are consistent with suggestions that, in our sites, several foraminiferal species collected from seep clam beds may not survive there, diet and symbiont presence do not appear to be major contributors to disequilibrium, little calcification of seep-tolerant foraminiferal species occurs while seep conditions prevail, and microscale variability in habitats could influence δ13C of benthic foraminiferal carbonate. Results further suggest that our knowledge of benthic foraminiferal ecology and biomineralization, especially in extreme habitats such as seeps, must be bolstered before we fully understand the fidelity of paleoenvironmental records derived from benthic foraminiferal test δ13C data.
    Description: This collaborative research was supported by NSF Marine Geology and Geophysics Program (OCE‐0551001 (to J.M.B), OCE‐0550396 (to J.B.M.), and OCE‐0550401 (to A.E.R.)).
    Keywords: Clam Flats ; Monterey Bay ; Carbon isotopes ; Disequilibrium ; Foraminifera ; Cold seep
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: image/tiff
    Format: text/plain
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 7
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Brinkmann, I., Ni, S., Schweizer, M., Oldham, V. E., Quintana Krupinski, N. B., Medjoubi, K., Somogyi, A., Whitehouse, M. J., Hansel, C. M., Barras, C., Bernhard, J. M., & Filipsson, H. L. Foraminiferal Mn/Ca as bottom-water hypoxia proxy: an assessment of Nonionella stella in the Santa Barbara Basin, USA. Paleoceanography and Paleoclimatology, 36(11), (2021): e2020PA004167, https://doi.org/10.1029/2020PA004167.
    Description: Hypoxia is of increasing concern in marine areas, calling for a better understanding of mechanisms leading to decreasing dissolved oxygen concentrations ([O2]). Much can be learned about the processes and implications of deoxygenation for marine ecosystems using proxy records from low-oxygen sites, provided proxies, such as the manganese (Mn) to calcium (Ca) ratio in benthic foraminiferal calcite, are available and well calibrated. Here we report a modern geochemical data set from three hypoxic sites within the Santa Barbara Basin (SBB), USA, where we study the response of Mn/Caforam in the benthic foraminifer Nonionella stella to variations in sedimentary redox conditions (Mn, Fe) and bottom-water dissolved [O2]. We combine molecular species identification by small subunit rDNA sequencing with morphological characterization and assign the SBB N. stella used here to a new phylotype (T6). Synchrotron-based scanning X-ray fluorescence (XRF) imaging and Secondary Ion Mass Spectrometry (SIMS) show low Mn incorporation (partition coefficient DMn 〈 0.05) and limited proxy sensitivity of N. stella, at least within the range of dissolved [O2] (2.7–9.6 μmol/l) and Mnpore-water gradients (2.12–21.59 μmol/l). Notably, even though intra- and interspecimen Mn/Ca variability (33% and 58%, respectively) was only partially controlled by the environment, Mn/Caforam significantly correlated with both pore-water Mn and bottom-water [O2]. However, the prevalent suboxic bottom-water conditions and limited dissolved [O2] range complicate the interpretation of trace-elemental trends. Additional work involving other oxygenation proxies and samples from a wider oxygen gradient should be pursued to further develop foraminiferal Mn/Ca as an indicator for hypoxic conditions.
    Description: We acknowledge funding from the Swedish Research Council VR (grant numbers 2017-04190 and 2017-00671), the Crafoord Foundation, and the Royal Physiographic Society in Lund, Sweden. Shiptime provided by US NSF IOS 1557430. We acknowledge SOLEIL for provision of synchrotron radiation facilities and the beamline NANOSCOPIUM (proposal number 20181115). The synchrotron-based experiments were supported by CALIPSOplus under the EU Framework Programme for Research and Innovation HORIZON 2020 (grant agreement 730872). The SIMS analyses were jointly supported by the Swedish Museum of Natural History and Swedish Research Council. This is NordSIMS contribution No. 694. J. M. Bernhard and C. M. Hansel also acknowledge funding from the US National Science Foundation (IOS 1557430).
    Keywords: Benthic foraminifera ; Deoxygenation ; Micro-analytical techniques ; Mn/Ca ; Proxy calibration
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 8
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 126(12), (2021): e2021JC017860, https://doi.org/10.1029/2021JC017860.
    Description: An appropriate proxy could help to better understand dissolved oxygen variations in the past, helping to predict potential outcomes of future environmental changes. In the Changjiang Estuary (China), the foraminifer Cribrononion subincertum (C. subincertum) shows a distinct population maximum in the topmost sediment, an indication of an epifaunal species. Therefore, the geochemical composition of C. subincertum tests could record changes in the region’s bottom water chemistry. Our results showed that Mn/Ca ratios in tests of living (Rose-Bengal stained) C. subincertum analyzed by LA-ICP-MS were responsive to variations of bottom water dissolved oxygen concentrations, with average foraminiferal Mn/Ca ratios three times higher during low-oxygen period than in winter. In the uppermost centimeters of sediment, wider ranges of foraminiferal Mn/Ca occurred in summer compared to winter ranges. Our results imply that this epifaunal benthic foraminiferal species could serve as a useful benthic monitor with the Mn/Ca ratios representing a reliable proxy of hypoxia in the past.
    Description: This study was financially supported by the Natural Science Foundation of China (NSFC Grants 41876075, 42130410, and 41620104001), and Fundamental Research Funds for the Central Universities (201841007, 201962003, and 201961012). JMB acknowledges the Investment in Science Fund at WHOI, which supported her participation in this project.
    Description: 2022-06-17
    Keywords: Epifaunal benthic foraminifera ; Mn/Ca ratio ; Coastal hypoxia ; Proxy ; LA-ICP-MS
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...