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  • 1
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    Techniques for cetacean–habitat modeling (2011)
    Inter-Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2006. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 310 (2006): 271-295, doi:10.3354/meps310271.
    Description: Cetacean–habitat modeling, although still in the early stages of development, represents a potentially powerful tool for predicting cetacean distributions and understanding the ecological processes determining these distributions. Marine ecosystems vary temporally on diel to decadal scales and spatially on scales from several meters to 1000s of kilometers. Many cetacean species are wide-ranging and respond to this variability by changes in distribution patterns. Cetacean–habitat models have already been used to incorporate this variability into management applications, including improvement of abundance estimates, development of marine protected areas, and understanding cetacean–fisheries interactions. We present a review of the development of cetacean–habitat models, organized according to the primary steps involved in the modeling process. Topics covered include purposes for which cetacean–habitat models are developed, scale issues in marine ecosystems, cetacean and habitat data collection, descriptive and statistical modeling techniques, model selection, and model evaluation. To date, descriptive statistical techniques have been used to explore cetacean–habitat relationships for selected species in specific areas; the numbers of species and geographic areas examined using computationally intensive statistic modeling techniques are considerably less, and the development of models to test specific hypotheses about the ecological processes determining cetacean distributions has just begun. Future directions in cetacean–habitat modeling span a wide range of possibilities, from development of basic modeling techniques to addressing important ecological questions.
    Description: Funding from the U.S. Navy and the Strategic Environmental Research and Development Program (SERDP) supported this research under Projects CS-1390 and CS-1391.
    Keywords: Cetacean–habitat modeling ; Predictive models ; Regression models ; Cross validation ; Spatial autocorrelation ; Classification models ; Ordination ; Environmental envelope models
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
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    Heat shock protein expression during stress and diapause in the marine copepod Calanus finmarchicus (2011)
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Journal of Insect Physiology 57 (2011): 665-675, doi:10.1016/j.jinsphys.2011.03.007.
    Description: Calanoid copepods, such as Calanus finmarchicus, are a key component of marine food webs. C. finmarchicus undergoes a facultative diapause during juvenile development, which profoundly affects their seasonal distribution and availability to their predators. The current ignorance of how copepod diapause is regulated limits understanding of copepod population dynamics, distribution, and ecosystem interactions. Heat shock proteins (Hsps) are a superfamily of molecular chaperones characteristically upregulated in response to stress conditions and frequently associated with diapause in other taxa. In this study, 8 heat shock proteins were identified in C. finmarchicus C5 copepodids (Hsp21, Hsp22, p26, Hsp90, and 4 forms of Hsp70), and expression of these transcripts was characterized in response to handling stress and in association with diapause. Hsp21, Hsp22, and Hsp70A (cytosolic subfamily) were induced by handling stress. Expression of Hsp70A was also elevated in shallow active copepodids relative to deep diapausing copepodids, which may reflect induction of this gene by varied stressors in active animals. In contrast, expression of Hsp22 was elevated in deep diapausing animals; Hsp22 may play a role both in short-term stress responses and in protecting proteins from degradation during diapause. Expression of most of the Hsps examined did not vary in response to diapause, perhaps because the diapause of C. finmarchicus is not associated with the extreme environmental conditions (e.g., freezing, desiccation) experienced by many other taxa, such as overwintering insects or Artemia cysts.
    Description: Funding for AMA was provided by the WHOI Summer Student Fellowship Program and an EPA STAR fellowship.
    Keywords: Copepod ; Crustacean ; Diapause ; Heat shock protein ; Stress response
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 3
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    Real-time reporting of baleen whale passive acoustic detections from ocean gliders (2013)
    Acoustical Society of America
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Acoustical Society of America, 2013. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 134 (2013): 1814-1823, doi:10.1121/1.4816406.
    Description: In the past decade, much progress has been made in real-time passive acoustic monitoring of marine mammal occurrence and distribution from autonomous platforms (e.g., gliders, floats, buoys), but current systems focus primarily on a single call type produced by a single species, often from a single location. A hardware and software system was developed to detect, classify, and report 14 call types produced by 4 species of baleen whales in real time from ocean gliders. During a 3-week deployment in the central Gulf of Maine in late November and early December 2012, two gliders reported over 25 000 acoustic detections attributed to fin, humpback, sei, and right whales. The overall false detection rate for individual calls was 14%, and for right, humpback, and fin whales, false predictions of occurrence during 15-min reporting periods were 5% or less. Transmitted pitch tracks—compact representations of sounds—allowed unambiguous identification of both humpback and fin whale song. Of the ten cases when whales were sighted during aerial or shipboard surveys and a glider was within 20 km of the sighting location, nine were accompanied by real-time acoustic detections of the same species by the glider within ±12 h of the sighting time.
    Description: The Office of Naval Research funded this work, with additional support provided by the NOAA Fisheries Advanced Sampling Technologies Working Group via the Cooperative Institute for the North Atlantic Region.
    Keywords: Acoustic signal detection ; Acoustic transducers ; Underwater sound
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Low frequency vocalizations attributed to sei whales (Balaenoptera borealis) (2011)
    Acoustical Society of America
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Acoustical Society of America, 2008. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 124 (2008): 1339-1349, doi:10.1121/1.2945155.
    Description: Low frequency (〈100 Hz) downsweep vocalizations were repeatedly recorded from ocean gliders east of Cape Cod, MA in May 2005. To identify the species responsible for this call, arrays of acoustic recorders were deployed in this same area during 2006 and 2007. 70 h of collocated visual observations at the center of each array were used to compare the localized occurrence of this call to the occurrence of three baleen whale species: right, humpback, and sei whales. The low frequency call was significantly associated only with the occurrence of sei whales. On average, the call swept from 82 to 34 Hz over 1.4 s and was most often produced as a single call, although pairs and (more rarely) triplets were occasionally detected. Individual calls comprising the pairs were localized to within tens of meters of one another and were more similar to one another than to contemporaneous calls by other whales, suggesting that paired calls may be produced by the same animal. A synthetic kernel was developed to facilitate automatic detection of this call using spectrogram-correlation methods. The optimal kernel missed 14% of calls, and of all the calls that were automatically detected, 15% were false positives.
    Description: Funding was provided by the NOAA National Marine Fisheries Service and the WHOI Ocean Life Institute.
    Keywords: bioacoustics ; biocommunications ; zoology
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Striking the right balance in right whale conservation (2010)
    NRC Research Press
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    Publication Date: 2022-05-25
    Description: Author Posting. © The Authors, 2009. This article is posted here by permission of NRC Research Press for personal use, not for redistribution. The definitive version was published in Canadian Journal of Fisheries and Aquatic Sciences 66 (2009): 1399-1403, doi:10.1139/F09-115.
    Description: Despite many years of study and protection, the North Atlantic right whale (Eubalaena glacialis) remains on the brink of extinction. There is a crucial gap in our understanding of their habitat use in the migratory corridor along the eastern seaboard of the United States. Here, we characterize habitat suitability in migrating right whales in relation to depth, distance to shore, and the recently enacted ship speed regulations near major ports. We find that the range of suitable habitat exceeds previous estimates and that, as compared with the enacted 20 nautical mile buffer, the originally proposed 30 nautical mile buffer would protect more habitat for this critically endangered species.
    Description: This work was supported in part by SERDP/DoD grant W912HQ-04-C-0011 to A.J. Read and P.N. Halpin as well as a James B. Duke Fellowship and a Harvey L. Smith Dissertation Year Fellowship to R.S. Schick.
    Repository Name: Woods Hole Open Access Server
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  • 6
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    A generalized baleen whale call detection and classification system (2011)
    Acoustical Society of America
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Acoustical Society of America, 2011. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 129 (2011): 2889-2902, doi:10.1121/1.3562166.
    Description: Passive acoustic monitoring allows the assessment of marine mammal occurrence and distribution at greater temporal and spatial scales than is now possible with traditional visual surveys. However, the large volume of acoustic data and the lengthy and laborious task of manually analyzing these data have hindered broad application of this technique. To overcome these limitations, a generalized automated detection and classification system (DCS) was developed to efficiently and accurately identify low-frequency baleen whale calls. The DCS (1) accounts for persistent narrowband and transient broadband noise, (2) characterizes temporal variation of dominant call frequencies via pitch-tracking, and (3) classifies calls based on attributes of the resulting pitch tracks using quadratic discriminant function analysis (QDFA). Automated detections of sei whale (Balaenoptera borealis) downsweep calls and North Atlantic right whale (Eubalaena glacialis) upcalls were evaluated using recordings collected in the southwestern Gulf of Maine during the spring seasons of 2006 and 2007. The accuracy of the DCS was similar to that of a human analyst: variability in differences between the DCS and an analyst was similar to that between independent analysts, and temporal variability in call rates was similar among the DCS and several analysts.
    Description: Funding for the fieldwork was provided by the NOAA NEFSC, WHOI Ocean Life Institute, and the WHOI John E. and Anne W. Sawyer Endowed Fund. Development of the detection and classification system was supported by a grant from the Office of Naval Research.
    Keywords: acoustic signal processing ; bioacoustics ; signal classification ; underwater sound
    Repository Name: Woods Hole Open Access Server
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  • 7
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    Long distance passive localization of vocalizing sei whales using an acoustic normal mode approach (2012)
    Acoustical Society of America
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Acoustical Society of America, 2012. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 131 (2012): 1814-1825, doi:10.1121/1.3666015.
    Description: During a 2 day period in mid-September 2006, more than 200, unconfirmed but identifiable, sei whale (Balaenoptera borealis) calls were collected as incidental data during a multidisciplinary oceanography and acoustics experiment on the shelf off New Jersey. Using a combined vertical and horizontal acoustic receiving array, sei whale movements were tracked over long distances (up to tens of kilometers) using a normal mode back propagation technique. This approach uses low-frequency, broadband passive sei whale call receptions from a single-station, two-dimensional hydrophone array to perform long distance localization and tracking by exploiting the dispersive nature of propagating normal modes in a shallow water environment. The back propagation approach is examined for accuracy and application to tracking the sei whale vocalizations identified in the vertical and horizontal array signals. This passive whale tracking, combined with the intensive oceanography measurements performed during the experiment, was also used to examine sei whale movements in relation to oceanographic features observed in this region.
    Description: Office of Naval Research
    Keywords: Acoustic signal processing ; Bioacoustics ; Oceanography ; Underwater sound
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Body shape changes associated with reproductive status, nutritive condition and growth in right whales Eubalaena glacialis and E. australis (2012)
    Inter-Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2012. This article is posted here by permission of Inter-Research. The definitive version was published in Marine Ecology Progress Series 459 (2012): 135-156, doi:10.3354/meps09675.
    Description: Mammalian reproduction is metabolically regulated; therefore, the endangered status and high variability in reproduction of North Atlantic right whales Eubalaena glacialis necessitate accurate assessments at sea of the nutritional condition of living individuals. Aerial photogrammetry was used to measure dorsal body width at multiple locations along the bodies of free-swimming right whales at different stages of the female reproductive cycle (E. glacialis) and during the initial months of lactation (mother and calf Eubalaena australis) to quantify changes in nutritional condition during energetically demanding events. Principal components analyses indicated that body width was most variable at 60% of the body length from the snout. Thoracic, abdominal and caudal body width of E. australis thinned significantly during the initial months of lactation, especially at 60% of body length from the snout, while their calves’ widths and width-to-length ratios increased. The body shape of E. glacialis that had been lactating for 8 mo was significantly thinner than non-lactating, non-pregnant E. glacialis. Body shape of E. glacialis measured in the eighth month of lactation was significantly thinner than that of E. australis in the first month, but did not differ from that of E. australis in the third and fourth months. Body width was comparable with diameter calculated from girth of carcasses. These results indicate that mother right whales rely on endogenous nutrient reserves to support the considerable energy expenditure during the initial months of lactation; therefore, photogrammetric measurements of body width, particularly at 60% of body length from the snout, are an effective way to quantitatively and remotely assess nutritional condition of living right whales.
    Description: This project was made possible with funds provided by the National Oceanic and Atmospheric Administration (NOAA), National Marine Fisheries Service, the Northeast Consortium, and the Hussey Foundation through the Ocean Life Institute at Woods Hole Oceanographic Institution.
    Keywords: Right whale ; Body shape ; Body condition ; Aerial photogrammetry ; Reproduction ; Energetics ; Eubalaena
    Repository Name: Woods Hole Open Access Server
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  • 9
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    Spatial and temporal distribution of cetaceans in the mid-Atlantic waters around the Azores (2013)
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of Taylor & Francis for personal use, not for redistribution. The definitive version was published in Marine Biology Research 10 (2014): 123-137, doi:10.1080/17451000.2013.793814.
    Description: Cetaceans living in offshore waters are under increasing pressure from anthropogenic activities. Yet, due to the lack of survey effort, relatively little is known about the demography or ecology of these populations. Spatial and temporal distribution of cetaceans in mid-Atlantic waters were investigated using a long term dataset collected from boat surveys and land-based observations around the Azores. From 1999 to 2009, 7307 cetacean schools were sighted during 271717 km of survey effort. In 4944 h of land-based observations, 2968 cetacean groups were detected. Twenty-four species were recorded: seven baleen whales, six beaked whales, eight dolphin species, Physeter macrocephalus, Kogia breviceps and K. sima. Overall, Delphinus delphis was the most frequently sighted species but its encounter rate decreased in June- November, coinciding with presence of Stenella frontalis in the region. Tursiops truncatus, P. macrocephalus and Grampus griseus were frequently encountered yearround, whereas large baleen whales showed a distinct peak in encounter rates in March-May. Mesoplodonts were fairly common and appear to be present throughout the year. These findings fill-in a significant gap in the knowledge of cetaceans occurring in a poorly studied region of the North Atlantic, providing much needed data to inform management initiatives.
    Description: This work was supported by FEDER funds, through the Competitiveness Factors Operational Programme – COMPETE, by national funds, through FCT – Foundation for Science and Technology, under projects CETAMARH (POCTI/BSE/38991/01) and TRACE (PTDC/MAR/74071/2006), and by regional funds, through DRCT/SRCTE, under project MAPCET (M2.1.2/F/012/2011). We thank the Azorean Regional Government for funding POPA, the Shipowners Proprietors and the Association of the Tuna Canning Industries for their support to the programme. MAS was supported by an FCT postdoctoral grant (SFRH/BPD/29841/2006), and IC and RP were supported by doctoral grants SFRH/BD/41192/2007 and SFRH/BD/32520/2006. IMAR-DOP/UAç is the R&D Unit #531 and part of the Associated Laboratory #9 (ISR) funded through the pluri-annual and programmatic funding schemes of FCT-MCTES and DRCTAzores.
    Keywords: Cetaceans ; Spatial and temporal distribution ; Mid-Atlantic waters ; Sighting surveys
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 10
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    Associations between North Pacific right whales and their zooplanktonic prey in the southeastern Bering Sea (2013)
    Inter-Research
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © Inter-Research, 2013. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 490 (2013): 267-284, doi:10.3354/meps10457.
    Description: Due to the seriously endangered status of North Pacific right whales Eubalaena japonica, an improved understanding of the environmental factors that influence the species’ distribution and occurrence is needed to better assess the effects of climate change and industrial activities on the population. Associations among right whales, zooplankton, and the physical environment were examined in the southeastern Bering Sea during the summers of 2008 and 2009. Sampling with nets, an optical plankton counter, and a video plankton recorder in proximity to whales as well as along cross-isobath surveys indicated that the copepod Calanus marshallae is the primary prey of right whales in this region. Acoustic detections of right whales from sonobuoys deployed during the cross-isobath surveys were strongly associated with C. marshallae abundance, and peak abundance estimates of C. marshallae in 2.5 m depth strata near a tagged right whale ranged as high as 106 copepods m-3. The smaller Pseudocalanus spp. was higher in abundance than C. marshallae in proximity to right whales, but significantly lower in biomass. High concentrations of C. marshallae occurred in both the surface and bottom layers of the highly stratified water column, but there was no evidence of diel vertical migration. Instead, occurrence of C. marshallae in the bottom layer was associated with elevated near-bottom light attenuance and chlorophyll fluorescence, suggesting C. marshallae may aggregate at depth while feeding on resuspended phytodetritus. Despite the occasional presence of strong horizontal gradients in hydrographic properties, no association was found between C. marshallae and either fronts or phytoplankton distribution.
    Description: This study was funded by the US Depart - ment of the Interior, Minerals Management Service (MMS; now Bureau of Ocean Energy Management), through Interagency Agreement No. M07RG13267 (AKC 063) with the US Department of Commerce, National Oceanic and Atmospheric Administration (NOAA), as part of the MMS Alaska Environmental Studies Program.
    Keywords: Eubalaena japonica ; Right whale ; Calanus marshallae ; Calanus glacialis ; Bering Sea ; Baleen whale ; Resuspension ; Phytodetritus
    Repository Name: Woods Hole Open Access Server
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