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  • 1
    Publikationsdatum: 2018-05-08
    Beschreibung: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 90, doi:10.3389/fmars.2018.00090.
    Beschreibung: Sea turtles inhabiting coastal environments routinely encounter anthropogenic hazards, including fisheries, vessel traffic, pollution, dredging, and drilling. To support mitigation of potential threats, it is important to understand fine-scale sea turtle behaviors in a variety of habitats. Recent advancements in autonomous underwater vehicles (AUVs) now make it possible to directly observe and study the subsurface behaviors and habitats of marine megafauna, including sea turtles. Here, we describe a “smart” AUV capability developed to study free-swimming marine animals, and demonstrate the utility of this technology in a pilot study investigating the behaviors and habitat of leatherback turtles (Dermochelys coriacea). We used a Remote Environmental Monitoring UnitS (REMUS-100) AUV, designated “TurtleCam,” that was modified to locate, follow and film tagged turtles for up to 8 h while simultaneously collecting environmental data. The TurtleCam system consists of a 100-m depth rated vehicle outfitted with a circular Ultra-Short BaseLine receiver array for omni-directional tracking of a tagged animal via a custom transponder tag that we attached to the turtle with two suction cups. The AUV collects video with six high-definition cameras (five mounted in the vehicle nose and one mounted aft) and we added a camera to the animal-borne transponder tag to record behavior from the turtle's perspective. Since behavior is likely a response to habitat factors, we collected concurrent in situ oceanographic data (bathymetry, temperature, salinity, chlorophyll-a, turbidity, currents) along the turtle's track. We tested the TurtleCam system during 2016 and 2017 in a densely populated coastal region off Cape Cod, Massachusetts, USA, where foraging leatherbacks overlap with fixed fishing gear and concentrated commercial and recreational vessel traffic. Here we present example data from one leatherback turtle to demonstrate the utility of TurtleCam. The concurrent video, localization, depth and environmental data allowed us to characterize leatherback diving behavior, foraging ecology, and habitat use, and to assess how turtle behavior mediates risk to impacts from anthropogenic activities. Our study demonstrates that an AUV can successfully track and image leatherback turtles feeding in a coastal environment, resulting in novel observations of three-dimensional subsurface behaviors and habitat use, with implications for sea turtle management and conservation.
    Beschreibung: This research was funded by National Oceanic and Atmospheric Administration Grant #NA16NMF4720074 to the Massachusetts Division of Marine Fisheries under the Species Recovery Grants to States program. Additional funding was provided by Jean Tempel, Hydroid Inc., and over 100 Project WHOI donors.
    Schlagwort(e): Autonomous underwater vehicle AUV ; CTD ; Entanglement ; Habitat ; Foraging behavior ; Jellyfish ; Leatherback sea turtle ; Video camera
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 2
    Publikationsdatum: 2022-05-25
    Beschreibung: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 13460, doi:10.1038/s41598-017-13359-3.
    Beschreibung: Given new distribution patterns of the endangered North Atlantic right whale (NARW; Eubalaena glacialis) population in recent years, an improved understanding of spatio-temporal movements are imperative for the conservation of this species. While so far visual data have provided most information on NARW movements, passive acoustic monitoring (PAM) was used in this study in order to better capture year-round NARW presence. This project used PAM data from 2004 to 2014 collected by 19 organizations throughout the western North Atlantic Ocean. Overall, data from 324 recorders (35,600 days) were processed and analyzed using a classification and detection system. Results highlight almost year-round habitat use of the western North Atlantic Ocean, with a decrease in detections in waters off Cape Hatteras, North Carolina in summer and fall. Data collected post 2010 showed an increased NARW presence in the mid-Atlantic region and a simultaneous decrease in the northern Gulf of Maine. In addition, NARWs were widely distributed across most regions throughout winter months. This study demonstrates that a large-scale analysis of PAM data provides significant value to understanding and tracking shifts in large whale movements over long time scales.
    Beschreibung: This research was funded and supported by many organizations, specified by projects as follows: Data recordings from region 1 were provided by K. Stafford and this research effort was funded by the National Science Foundation #NSF-ARC 0532611. Region 2 data were provided by D. K. Mellinger and S. Nieukirk, funded by National Oceanic and Atmospheric Agency (NOAA) and the Office of Naval Research (ONR) #N00014–03–1–0099, NOAA #NA06OAR4600100, US Navy #N00244-08-1-0029, N00244-09-1-0079, and N00244-10-1-0047.
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 3
    Publikationsdatum: 2022-05-25
    Beschreibung: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Ecology Progress Series 532 (2015): 269-281, doi:10.3354/meps11366.
    Beschreibung: Understanding habitat use of critically endangered North Pacific right whales (NPRWs, Eubalaena japonica) is important to better evaluate the potential effects of anthropogenic activities and climate change on this species. Satellite transmitters were deployed on individual right whales in 2004, 2008 and 2009 to investigate whether their space-use patterns in the Southeastern Bering Sea (SEBS) were influenced by environmental conditions and to assess habitat use in areas of human interest. Whales were monitored for an average of 40 d (range 29-58 d) between July and October, a period in which they inhabited the SEBS shelf. Individuals tagged in 2008-2009 (cold years) remained in the middle shelf domain, travelled at a slower rate and showed a spatially more restricted habitat use than a whale tagged in 2004 (a warm year). Monte Carlo tests suggested that NPRWs associated with the cold pool (remnant winter water in the bottom layer of the middle shelf domain) during cold years, which is likely due to higher copepod abundance and reduced competition with other copepod predators within the cold pool. Telemetry data indicated that a Critical Habitat designated by the US National Marine Fisheries Service encompasses the main feeding range of NPRWs in the Bering Sea. Two whales briefly visited the North Aleutian Basin, an area previously considered for oil and gas development. Small sample sizes precluded conclusive comparisons of space-use patterns among years with significantly different temperature regimes, but we hypothesize that habitat use in the SEBS varies with these regimes because of concomitant changes in the abundance of the whales primary copepod prey. Long-term evaluation of space-use patterns of NPRWs is required to further understand their habits in the feeding grounds in light of global warming and the potential for increased anthropogenic activities.
    Beschreibung: Funding for this research was provided by the North Pacific Research Board (NPRB, Project #720) and by the former Minerals Management Service (now Bureau of Ocean Energy Management, BOEM). This paper is contribution 558 from NPRB.
    Schlagwort(e): Eubalaena japonica ; North Pacific right whale ; Satellite telemetry ; Oceanography ; Bering Sea ; Conservation
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 4
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    Woods Hole Oceanographic Institution
    Publikationsdatum: 2018-02-05
    Beschreibung: This 5 CDROM set contains in-situ and numerical weather prediction model data collected during the Coastal Mixing and Optics (CMO) Experiment. These data were analyzed in a manuscript entitled "Evaluation of NCEP regional numerical weather prediction model surface fields over the Middle Atlantic Bight" which can be found in Postscript format on CDROM 1 in the "paper" directory. Three NWP models (the early Eta, meso Eta and RUC-1) were evaluated using in-situ meteorological observations and air-sea flux estimates from the central CMO buoy and six NDBC buoys. Based on these evaluations, gridded air-sea flux fields for use in the CMO experiment were generated from the meso Eta model surface fields. Both the original and adjusted meso Eta model surface fields can be found in this CDROM set. CDROM 1 contains all of the in-situ measurements as well as the model data extracted at each of the moored buoys. CDROM 1 also contains the AVHRR 14 km SST analysis from NCEP, the GCIP incoming surface shortwave product, plots of the 0, 3, 6 and 9 hour adjusted meso Eta forecasts for both the meteorology and air-sea fluxes and two QuickTime animations of the adjusted meso Eta model fields. CDROMs 2 and 3 contain the meso Eta model surface data acquired from NCEP archives and reformatted from GRIB to NetCDF. CDROMs 4 and 5 contain the CMO air-sea flux fields derived from the meso Eta surface fields. The source code of the program used to generate the CMO flux fields is in the "code" directory on CDROM 1.
    Beschreibung: The CMO moored array was conceived and designed by co-principal investigators S. Anderson, J. Edson, S. Lentz and A. Plueddemann. Successful field operations were due to the efforts of W. Ostrom, R. Trask, B. Way, the WHOI Upper Ocean Processes Group and the fine crew of the R/V Oceanus under the direction of Captain P. Howland. J. Edson provided sonic anemometer data and R. Pinker provided the GCIP radiation fields. The staff of the NDBC are to be commended for their data collection, quality control and distribution efforts. The CMO moored array experiment was supported by the Office of Naval Research under contract N00014-95-1-0339.
    Schlagwort(e): Ocean-atmosphere interaction ; Numerical weather forecasting ; Coastal Mixing and Optics (CMO) Experiment
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
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  • 5
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 222–231, doi:10.5670/oceanog.2016.54.
    Beschreibung: The Bay of Bengal (BoB) is strongly density stratified due to large freshwater input from various rivers and heavy precipitation. This strong vertical stratification, along with physical processes, regulates the transport and vertical exchange of surface and subsurface water, concentrating nutrients and intensifying the oxygen minimum zone (OMZ). Here, we use basinwide measurements to describe the spatial distributions of nutrients, oxygen, and phytoplankton within the BoB during the 2013 northeast monsoon (November–December). By the time riverine water reaches the interior bay, it is depleted in the nutrients nitrate and phosphate, but not silicate. Layering of freshwater in the northern BoB depresses isopycnals, leading to a deepening of the nutricline and oxycline. Oxygen concentrations in the OMZ are lowest in the north (〈5 µM). Weak along-isopycnal nutrient gradients reflect along-isopycnal stirring between ventilated surface water and deep nutrient-replenished water. Picoplankton dominate the phytoplankton population in the north, presumably outcompeting larger phytoplankton species due to their low nutrient requirements. Micro- and nanoplankton numbers are enhanced in regions with deeper mixed layers and weaker stratification, where nutrient replenishment from subsurface waters is more feasible. These are also the regions where marine mammals were sighted. Physical processes and the temperature-salinity structure in the BoB directly influence the OMZ and the depth of the oxycline and nutricline, thereby affecting the phytoplankton and marine mammal communities.
    Beschreibung: We would like to thank the Director, CSIR-National Institute of Oceanography, for support. CKS acknowledges CSIR/AcSIR for a research fellowship. MFB and KMS were supported by the US Office of Naval Research Marine Mammals and Biology Program.
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 6
    Publikationsdatum: 2022-10-20
    Beschreibung: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Dodge, K. L., Kukulya, A. L., Burke, E., & Baumgartner, M. F. (2018). TurtleCam: A "smart" autonomous underwater vehicle for investigating behaviors and habitats of sea turtles. Frontiers in Marine Science, 5, (2018): 90. doi:10.3389/fmars.2018.00090.
    Beschreibung: Sea turtles inhabiting coastal environments routinely encounter anthropogenic hazards, including fisheries, vessel traffic, pollution, dredging, and drilling. To support mitigation of potential threats, it is important to understand fine-scale sea turtle behaviors in a variety of habitats. Recent advancements in autonomous underwater vehicles (AUVs) now make it possible to directly observe and study the subsurface behaviors and habitats of marine megafauna, including sea turtles. Here, we describe a “smart” AUV capability developed to study free-swimming marine animals, and demonstrate the utility of this technology in a pilot study investigating the behaviors and habitat of leatherback turtles (Dermochelys coriacea). We used a Remote Environmental Monitoring UnitS (REMUS-100) AUV, designated “TurtleCam,” that was modified to locate, follow and film tagged turtles for up to 8 h while simultaneously collecting environmental data. The TurtleCam system consists of a 100-m depth rated vehicle outfitted with a circular Ultra-Short BaseLine receiver array for omni-directional tracking of a tagged animal via a custom transponder tag that we attached to the turtle with two suction cups. The AUV collects video with six high-definition cameras (five mounted in the vehicle nose and one mounted aft) and we added a camera to the animal-borne transponder tag to record behavior from the turtle's perspective. Since behavior is likely a response to habitat factors, we collected concurrent in situ oceanographic data (bathymetry, temperature, salinity, chlorophyll-a, turbidity, currents) along the turtle's track. We tested the TurtleCam system during 2016 and 2017 in a densely populated coastal region off Cape Cod, Massachusetts, USA, where foraging leatherbacks overlap with fixed fishing gear and concentrated commercial and recreational vessel traffic. Here we present example data from one leatherback turtle to demonstrate the utility of TurtleCam. The concurrent video, localization, depth and environmental data allowed us to characterize leatherback diving behavior, foraging ecology, and habitat use, and to assess how turtle behavior mediates risk to impacts from anthropogenic activities. Our study demonstrates that an AUV can successfully track and image leatherback turtles feeding in a coastal environment, resulting in novel observations of three-dimensional subsurface behaviors and habitat use, with implications for sea turtle management and conservation.
    Beschreibung: This research was funded by National Oceanic and Atmospheric Administration Grant #NA16NMF4720074 to the Massachusetts Division of Marine Fisheries under the Species Recovery Grants to States program. Additional funding was provided by Jean Tempel, Hydroid Inc., and over 100 Project WHOI donors.
    Schlagwort(e): Autonomous underwater vehicle AUV ; CTD ; Entanglement ; Habitat ; Foraging behavior ; Jellyfish ; Leatherback sea turtle ; Video camera
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
    Publikationsdatum: 2022-10-20
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Baumgartner, M. F., Bonnell, J., Van Parijs, S. M., Corkeron, P. J., Hotchkin, C., Ball, K., Pelletier, L., Partan, J., Peters, D., Kemp, J., Pietro, J., Newhall, K., Stokes, A., Cole, T. V. N., Quintana, E., & Kraus, S. D. Persistent near real-time passive acoustic monitoring for baleen whales from a moored buoy: System description and evaluation. Methods in Ecology and Evolution, 10(9), (2019): 1476-1489, doi: 10.1111/2041-210X.13244.
    Beschreibung: 1. Managing interactions between human activities and marine mammals often relies on an understanding of the real‐time distribution or occurrence of animals. Visual surveys typically cannot provide persistent monitoring because of expense and weather limitations, and while passive acoustic recorders can monitor continuously, the data they collect are often not accessible until the recorder is recovered. 2. We have developed a moored passive acoustic monitoring system that provides near real‐time occurrence estimates for humpback, sei, fin and North Atlantic right whales from a single site for a year, and makes those occurrence estimates available via a publicly accessible website, email and text messages, a smartphone/tablet app and the U.S. Coast Guard's maritime domain awareness software. We evaluated this system using a buoy deployed off the coast of Massachusetts during 2015–2016 and redeployed again during 2016–2017. Near real‐time estimates of whale occurrence were compared to simultaneously collected archived audio as well as whale sightings collected near the buoy by aerial surveys. 3. False detection rates for right, humpback and sei whales were 0% and nearly 0% for fin whales, whereas missed detection rates at daily time scales were modest (12%–42%). Missed detections were significantly associated with low calling rates for all species. We observed strong associations between right whale visual sightings and near real‐time acoustic detections over a monitoring range 30–40 km and temporal scales of 24–48 hr, suggesting that silent animals were not especially problematic for estimating occurrence of right whales in the study area. There was no association between acoustic detections and visual sightings of humpback whales. 4. The moored buoy has been used to reduce the risk of ship strikes for right whales in a U.S. Coast Guard gunnery range, and can be applied to other mitigation applications.
    Beschreibung: We thank Annamaria Izzi, Danielle Cholewiak and Genevieve Davis of the NOAA NEFSC for assistance in developing the analyst protocol. We are grateful to the NOAA NEFSC aerial survey observers (Leah Crowe, Pete Duley, Jen Gatzke, Allison Henry, Christin Khan and Karen Vale) and the NEAq aerial survey observers (Angela Bostwick, Marianna Hagbloom and Paul Nagelkirk). Danielle Cholewiak and three anonymous reviewers provided constructive criticism on earlier drafts of the manuscript. Funding for this project was provided by the NOAA NEFSC, NOAA Advanced Sampling Technology Work Group, Environmental Security Technology Certification Program of the U.S. Department of Defense, the U.S. Navy's Living Marine Resources Program, Massachusetts Clean Energy Center and the Bureau of Ocean Energy Management. Funding from NOAA was facilitated by the Cooperative Institute for the North Atlantic Region (CINAR) under Cooperative Agreement NA14OAR4320158.
    Schlagwort(e): Acoustics ; Autonomous ; Buoy ; Conservation ; Mitigation ; Real‐time ; Ship strikes ; Whale
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 8
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Zoology 11 (2014): 91, doi:10.1186/s12983-014-0091-8.
    Beschreibung: Calanus finmarchicus, a highly abundant copepod that is an important primary consumer in North Atlantic ecosystems, has a flexible life history in which copepods in the last juvenile developmental stage (fifth copepodid, C5) may either delay maturation and enter diapause or molt directly into adults. The factors that regulate this developmental plasticity are poorly understood, and few tools have been developed to assess the physiological condition of individual copepods. We sampled a cultured population of C. finmarchicus copepods daily throughout the C5 stage and assessed molt stage progression, gonad development and lipid storage. We used high-throughput sequencing to identify genes that were differentially expressed during progression through the molt stage and then used qPCR to profile daily expression of individual genes. Based on expression profiles of twelve genes, samples were statistically clustered into three groups: (1) an early period occurring prior to separation of the cuticle from the epidermis (apolysis) when expression of genes associated with lipid synthesis and transport (FABP and ELOV) and two nuclear receptors (ERR and HR78) was highest, (2) a middle period of rapid change in both gene expression and physiological condition, including local minima and maxima in several nuclear receptors (FTZ-F1, HR38b, and EcR), and (3) a late period when gonads were differentiated and expression of genes associated with molting (Torso-like, HR38a) peaked. The ratio of Torso-like to HR38b strongly differentiated the early and late groups. This study provides the first dynamic profiles of gene expression anchored with morphological markers of lipid accumulation, development and gonad maturation throughout a copepod molt cycle. Transcriptomic profiling revealed significant changes over the molt cycle in genes with presumed roles in lipid synthesis, molt regulation and gonad development, suggestive of a coupling of these processes in Calanus finmarchicus. Finally, we identified gene expression profiles that strongly differentiate between early and late development within the C5 copepodid stage. We anticipate that these findings and continued development of robust gene expression biomarkers that distinguish between diapause preparation and continuous development will ultimately enable novel studies of the intrinsic and extrinsic factors that govern diapause initiation in Calanus finmarchicus.
    Beschreibung: This work was supported by grant number OCE-1132567 from the National Science Foundation to MFB and AMT. Additional supported was provided by WHOI Early Career Scientist Awards provided to MFB and AMT.
    Schlagwort(e): Arthropod ; Crustacean ; Gene expression ; Molt cycle ; Transcriptomics
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 9
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Methods in Ecology and Evolution 6 (2015): 289–297, doi:10.1111/2041-210X.12325.
    Beschreibung: Current studies of fine-scale baleen whale diving and foraging behaviour rely on archival suction cup tags that remain attached over time scales of hours. However, skin irregularities can make suction cup attachment unreliable, and traditional pole deployment of suction cup tags is challenging in moderate sea conditions or when whales are evasive. We developed a new tag attachment to overcome these limitations. The attachment features a short (6·5–7·5 cm) needle that anchors in the whale's dermis (epidermis and blubber) to which a free-floating tag is attached via a severable tethered link. The needle, tag and a detachable ‘carrier rocket’ with fletching are fitted together to form a projectile that can be deployed at distances of up to 20 m using a compressed-air launcher. A corrosive release mechanism allows the tag to separate from the needle after a specified period of time so that the tag can be recovered. The dermal attachment was evaluated during a study of humpback whales (Megaptera novaeangliae) in the Gulf of Maine and then subsequently deployed on bowhead whales (Balaena mysticetus) near Barrow, Alaska. Monitoring of tagged humpback whales indicated that the needle was shed several days after deployment, the attachment site healed shortly thereafter, and there were no discernible behavioural or health effects over time scales of days to months after tagging. Bowhead whales showed little immediate reaction to tagging; the most common response was a prolonged dive right after tag deployment. On average, respiration rates of tagged bowhead whales were elevated after tag attachment, but returned to the same rate as undisturbed bowheads within 1–1·5 h. When compared to suction cups, the dermal anchor provided a more reliable attachment and it can be applied from greater distances and in rougher sea conditions; it is therefore a useful alternative in circumstances where suction cup tags cannot be easily deployed.
    Beschreibung: This study was funded by the U.S. Department of the Interior, Minerals Management Service (MMS; now Bureau of Ocean Energy Management), through Inter-agency Agreement No. M08PG20021 with the U.S. Department of Commerce, National Oceanic and Atmospheric Administration, as part of the MMS Alaska Environmental Studies Program.
    Schlagwort(e): Behaviour ; Bowhead whale ; Foraging ; Humpback whale ; Mysticete ; Suction cup
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 10
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 242–253, doi:10.5670/oceanog.2016.56.
    Beschreibung: Because the monsoon strongly affects India, there is a clear need for indigenous expertise in advancing the science that underlies monsoon prediction. The safety of marine transport in the tropics relies on accurate atmospheric and ocean environment predictions on weekly and longer time scales in the Indian Ocean. This need to better forecast the monsoon motivates the United States to advance basic research and support training of early career US scientists in tropical oceanography. Earlier Indian field campaigns and modeling studies indicated that an improved understanding of the interactions between the upper ocean and the atmosphere in the Bay of Bengal at finer spatial and temporal scales could lead to improved intraseasonal monsoon forecasts. The joint US Air-Sea Interactions Regional Initiative (ASIRI) and the Indian Ocean Mixing and Monsoon (OMM) program studied these interactions, resulting in scientific advances described by articles in this special issue of Oceanography. In addition to these scientific advances, and while also developing long-lasting collaborations and building indigenous Indian capability, a key component of these programs is training early career scientists from India and the United States. Training has been focusing on fine-scale and mixing studies of the upper ocean, air-sea interactions, and marine mammal research. Advanced methods in instrumentation, autonomous robotic platforms, experimental design, data analysis, and modeling have been emphasized. Students and scientists from India and the United States at all levels have been participating in joint cruises on Indian and US research vessels and in training participants in modern tools and methods at summer schools, at focused research workshops, and during research visits. Such activities are building new indigenous capability in India, training a new cadre of US scientists well versed in monsoon air-sea interaction, and forging strong links between Indian and US oceanographic institutions.
    Beschreibung: We are grateful for the support of the administration of NARA
    Repository-Name: Woods Hole Open Access Server
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