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  • 1
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    In:  [Talk] In: International Carbon Dioxide Conference 8, 14.-18.09, Jena .
    Publication Date: 2012-02-23
    Type: Conference or Workshop Item , NonPeerReviewed
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  • 2
    Publication Date: 2019-09-23
    Description: Initially a North Atlantic project, the CARINA carbon synthesis was extended to include the Southern Ocean. Carbon and relevant hydrographic and geochemical ancillary data from cruises all across the Arctic Mediterranean Seas, Atlantic and Southern Ocean were released to the public and merged into a new database as part of the CARINA synthesis effort. Of a total of 188 cruises, 37 cruises are part of the Southern Ocean, including 11 from the Atlantic sector. The variables from all Southern Ocean cruises, including dissolved inorganic carbon (TCO2), total alkalinity, oxygen, nitrate, phosphate and silicate, were examined for cruise-to-cruise consistency in one collective effort. Seawater pH and chlorofluorocarbons (CFCs) are also part of the database, but the pH quality control (QC) is described in another Earth System Science Data publication, while the complexity of the Southern Ocean physics and biogeochemistry prevented a proper QC analysis of the CFCs. The area-specific procedures of quality control, including crossover analysis between stations and inversion analysis of all crossover data (i.e. secondary QC), are briefly described here for the Atlantic sector of the Southern Ocean. Data from an existing, quality controlled database (GLODAP) were used as a reference for our computations – however, the reference data were included into the analysis without applying the recommended GLODAP adjustments so the corrections could be independently verified. The outcome of this effort is an internally consistent, high-quality carbon data set for all cruises, including the reference cruises. The suggested corrections by the inversion analysis were allowed to vary within a fixed envelope, thus accounting for natural variability. The percentage of cruises adjusted ranged from 31% (for nitrate) to 54% (for phosphate) depending on the variable.
    Type: Article , PeerReviewed
    Format: text
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  • 3
    Publication Date: 2019-10-10
    Description: Carbon and carbon-relevant hydrographic and hydrochemical ancillary data from previously not publicly available cruises were retrieved and recently merged to a new data base, CARINA (CARbon IN the Atlantic). The initial North Atlantic project, an international effort for ocean carbon synthesis, was extended to include the Arctic Mediterranean Seas (Arctic Ocean and Nordic Seas) and all three sectors of the Southern Ocean. Of a total of 188 cruises, 37 cruises are part of the Southern Ocean. The present work focuses on data collected in the Indian sector (20° S–70° S; 30° E–150° E). The Southern Indian Ocean dataset covers the period 1992–2004 and includes seasonal repeated observations. Parameters including salinity, dissolved inorganic carbon (TCO2), total alkalinity (TA), oxygen, nitrate, phosphate and silicate were examined for cruise-to-cruise and overall consistency. In addition, data from an existing, quality controlled data base (GLODAP) were introduced in the CARINA analysis to improve data coverage in the Southern Ocean. A global inversion was performed to synthesize the information deduced from objective comparisons of deep measurements (〉1500 m) at nearby stations (generally 〈220 km). The corrections suggested by the inversion were allowed to vary within a fixed envelope, thus accounting for ocean interior variability. The adjustments applied to CARINA data and those recommended for GLODAP data, in order to obtain a consistent merged dataset, are presented and discussed. The final outcome of this effort is a new quality controlled data base for TCO2 and other properties of the carbon system that can now be used to investigate the natural variability or stability of ocean chemistry and the accumulation of anthropogenic carbon. This data product also offers an important new synthesis of seasonal to decadal observations to validate ocean biogeochemical models in a region where available historical data were very sparse.
    Type: Article , PeerReviewed
    Format: text
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  • 4
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    157, Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U. S. Department of Energy
    In:  ORNL/CDIAC . 157, Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U. S. Department of Energy, Oak Ridge, TN, USA, VII, 11 pp.
    Publication Date: 2019-10-10
    Type: Report , NonPeerReviewed
    Format: text
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  • 5
    ISSN: 1574-695X
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Colonization with Helicobacter pylori always results in chronic gastritis, which is controlled by infiltration of mononuclear cells and the subsequent release of cytokines like interleukin (IL)-12. To identify H. pylori factors involved in inducing cytokine production in mononuclear cells, a random H. pylori mutant library was screened for the inability to induce IL-12 production in monocyte THP-1 cells. Of the 231 random mutants screened, one mutant (M1) showed a consistent twofold decrease in the amount of IL-12 induction compared to the parental strain 1061 (P〈0.01). Further characterization of mutant M1 revealed that the kanamycin resistance cassette had integrated in the jhp0945 gene, which is situated in an H. pylori strain-specific plasticity region. Three reference strains possessing this plasticity region induced significantly higher amounts of IL-12 when compared to the H. pylori 26695 reference strain, which does not possess this plasticity region. The role in disease outcome of jhp0945 as well as the neighbouring plasticity region genes jhp0947 and jhp049 was assessed in a Dutch population cohort. Firstly, the presence of jhp0947 was completely linked with that of jhp0949 and was roughly associated with jhp0945 (P=0.072), but not with the cag pathogenicity island (PAI) (P=0.464). The presence of the jhp0947 and jhp0949 genes, but not of jhp0945, was significantly associated with duodenal ulcer disease when compared to gastritis (P=0.027). Therefore, the jhp0947–jhp0949 locus may be a novel putative H. pylori marker for disease outcome independent of the cag PAI.
    Type of Medium: Electronic Resource
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  • 6
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    Copernicus Publications
    In:  EPIC3Earth System Science Data, Copernicus Publications, 5(1), pp. 145-153, ISSN: 1866-3516
    Publication Date: 2015-03-19
    Description: As a response to public demand for a well documented, quality controlled, publically available, global surface ocean carbon dioxide (CO2) data set, the international marine carbon science community developed the Surface Ocean CO2 Atlas (SOCAT). The first SOCAT product is a collection of 6.3 million quality controlled surface CO2 data from the global oceans and coastal seas, spanning four decades (1968–2007). The SOCAT gridded data presented here is the second data product to come from the SOCAT project. Recognizing that some groups may have trouble working with millions of measurements, the SOCAT gridded product was generated to provide a robust, regularly spaced CO2 fugacity (fCO2) product with minimal spatial and temporal interpolation, which should be easier to work with for many applications. Gridded SOCAT is rich with information that has not been fully explored yet (e.g., regional differences in the seasonal cycles), but also contains biases and limitations that the user needs to recognize and address (e.g., local influences on values in some coastal regions).
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 7
    Publication Date: 2019-03-19
    Repository Name: EPIC Alfred Wegener Institut
    Type: Miscellaneous , notRev
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  • 8
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    Copernicus Publications
    In:  EPIC3Earth System Science Data, Copernicus Publications, 5(1), pp. 125-143, ISSN: 1866-3516
    Publication Date: 2015-03-19
    Description: A well-documented, publicly available, global data set of surface ocean carbon dioxide (CO2) parameters has been called for by international groups for nearly two decades. The Surface Ocean CO2 Atlas (SOCAT) project was initiated by the international marine carbon science community in 2007 with the aim of providing a comprehensive, publicly available, regularly updated, global data set of marine surface CO2, which had been subject to quality control (QC). Many additional CO2 data, not yet made public via the Carbon Dioxide Information Analysis Center (CDIAC), were retrieved from data originators, public websites and other data centres. All data were put in a uniform format following a strict protocol. Quality control was carried out according to clearly defined criteria. Regional specialists performed the quality control, using state-of-the-art web-based tools, specially developed for accomplishing this global team effort. SOCAT version 1.5 was made public in September 2011 and holds 6.3 million quality controlled surface CO2 data points from the global oceans and coastal seas, spanning four decades (1968–2007). Three types of data products are available: individual cruise files, a merged complete data set and gridded products. With the rapid expansion of marine CO2 data collection and the importance of quantifying net global oceanic CO2 uptake and its changes, sustained data synthesis and data access are priorities.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 9
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    Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory, Oak Ridge, Tennessee
    In:  EPIC3report ORNL/CDIAC-140, Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory, Oak Ridge, Tennessee, 43 p.
    Publication Date: 2014-09-01
    Description: As part of the global synthesis effort sponsored by the Global Carbon Cycle project of the National Oceanic and Atmospheric Administration (NOAA) and U.S. Department of Energy, a comprehensive comparison was performed of inorganic carbon parameters measured on oceanographic surveys carried out under auspices of the Joint Global Ocean Flux Study and related programs. Many of the cruises were performed as part of the World Hydrographic Program of the World Ocean Circulation Experiment and the NOAA Ocean-Atmosphere Carbon Exchange Study. Total dissolved inorganic carbon (DIC), total alkalinity (TAlk), fugacity of CO2, and pH data from twenty-three cruises were checked to determine whether there were systematic offsets of these parameters between cruises. The focus was on the DIC and TAlk state variables. Data quality and offsets of DIC and TAlk were determined by using several different techniques. One approach was based on crossover analyses, where the deep-water concentrations of DIC and TAlk were compared for stations on different cruises that were within 100 km of each other. Regional comparisons were also made by using a multiple-parameter linear regression technique in which DIC or TAlk was regressed against hydrographic and nutrient parameters. When offsets of greater than 4 μmol/kg were observed for DIC and/or 6 μmol/kg were observed for TAlk, the data taken on the cruise were closely scrutinized to determine whether the offsets were systematic. Based on these analyses, the DIC data and TAlk data of three cruises were deemed of insufficient quality to be included in the comprehensive basinwide data set. For several of the cruises, small adjustments in TAlk were recommended for consistency with other cruises in the region. After these adjustments were incorporated, the inorganic carbon data from all cruises along with hydrographic, chlorofluorocarbon, and nutrient data were combined as a research-quality product for the scientific community.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Miscellaneous , notRev
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  • 10
    Publication Date: 2019-03-18
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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