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  • 1
    Publication Date: 2020-09-08
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 2
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Hurricane Harvey Impacts on Water Biogeochemistry
    Description: The impact of Hurricane Harvey on the chemical composition of water was assessed using samples collected from June 2017 to March 2019 at Mission-Aransas Estuary in south Texas. Hydrographic measurements including temperature, salinity, dissolved oxygen, and pH were collected on site using a YSI sonde. Water samples were obtained from both surface and bottom depths at 19 sites, and later analyzed for dissolved nutrients, organic carbon and nitrogen, and pigments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/839385
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1763167
    Keywords: Water geochemistry ; Hurricane Harvey ; Estuary ; Nutrients ; Pigments ; Suspended particles
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 3
    Publication Date: 2022-10-31
    Description: Dataset: Hurricane Harvey Impacts on Sediment Biogeochemistry
    Description: The impact of Hurricane Harvey on sediment biogeochemistry was assessed using sediment samples collected from June 2017 to March 2019 in Mission-Aransas Estuary in south Texas. Sediment core samples were sectioned and analyzed for mineral grain size, organic carbon and nitrogen, stable isotopic composition, pigments, plus sediment alkane and polycyclic aromatic hydrocarbons. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/839436
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1763167
    Keywords: Sediments ; Hurricane Harvey ; Estuary ; Pigments ; Sediment chemistry ; Grain size
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 4
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Steen, A. D., Kusch, S., Abdulla, H. A., Cakic, N., Coffinet, S., Dittmar, T., Fulton, J. M., Galy, V., Hinrichs, K., Ingalls, A. E., Koch, B. P., Kujawinski, E., Liu, Z., Osterholz, H., Rush, D., Seidel, M., Sepulveda, J., & Wakeham, S. G. Analytical and computational advances, opportunities, and challenges in marine organic biogeochemistry in an era of "Omics". Frontiers in Marine Science, 7, (2020): 718, doi:10.3389/fmars.2020.00718.
    Description: Advances in sampling tools, analytical methods, and data handling capabilities have been fundamental to the growth of marine organic biogeochemistry over the past four decades. There has always been a strong feedback between analytical advances and scientific advances. However, whereas advances in analytical technology were often the driving force that made possible progress in elucidating the sources and fate of organic matter in the ocean in the first decades of marine organic biogeochemistry, today process-based scientific questions should drive analytical developments. Several paradigm shifts and challenges for the future are related to the intersection between analytical progress and scientific evolution. Untargeted “molecular headhunting” for its own sake is now being subsumed into process-driven targeted investigations that ask new questions and thus require new analytical capabilities. However, there are still major gaps in characterizing the chemical composition and biochemical behavior of macromolecules, as well as in generating reference standards for relevant types of organic matter. Field-based measurements are now routinely complemented by controlled laboratory experiments and in situ rate measurements of key biogeochemical processes. And finally, the multidisciplinary investigations that are becoming more common generate large and diverse datasets, requiring innovative computational tools to integrate often disparate data sets, including better global coverage and mapping. Here, we compile examples of developments in analytical methods that have enabled transformative scientific advances since 2004, and we project some challenges and opportunities in the near future. We believe that addressing these challenges and capitalizing on these opportunities will ensure continued progress in understanding the cycling of organic carbon in the ocean.
    Description: The Hanse-Wissenschaftskolleg Delmenhorst, Germany, sponsored the “Marine Organic Biogeochemistry” workshop in April 2019, of which this working group report was a part. The workshop was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – project number: 422798570. The Geochemical Society provided additional funding for the conference. AS was supported by DOE grant DE-SC0020369.
    Keywords: Chemometrics ; Natural marine organic matter ; FT-ICR-MS ; Analytical challenges ; HR-NMR ; Marine organic biogeochemistry
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2020-02-06
    Description: Cyanobacterial harmful algal blooms (CyanoHABs) are enhanced by anthropogenic pressures, including excessive nutrient (nitrogen, N, and phosphorus, P) inputs and a warming climate. Severe eutrophication in aquatic systems is often manifested as non-N2-fixing CyanoHABs (e.g., Microcystis spp.), but the biogeochemical relationship between N inputs/dynamics and CyanoHABs needs definition. Community biological ammonium (NH4+) demand (CBAD) relates N dynamics to total microbial productivity and NH4+ deprivation in aquatic systems. A mechanistic conceptual model was constructed by combining nutrient cycling and CBAD observations from a spectrum of lakes to assess N cycling interactions with CyanoHABs. Model predictions were supported with CBAD data from a Microcystis bloom in Maumee Bay, Lake Erie, during summer 2015. Nitrogen compounds are transformed to reduced, more bioavailable forms (e.g., NH4+ and urea) favored by CyanoHABs. During blooms, algal biomass increases faster than internal NH4+ regeneration rates, causing high CBAD values. High turnover rates from cell death and remineralization of labile organic matter consume oxygen and enhance denitrification. These processes drive eutrophic systems to NH4+ limitation or colimitation under warm, shallow conditions and support the need for dual nutrient (N and P) control.
    Type: Article , PeerReviewed
    Format: text
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  • 6
    Publication Date: 2020-03-19
    Description: The quantitative relationship between organic carbon and mineral contents of particles sinking below 1800 m in the ocean indicates that organisms with mineral shells such as coccolithophores are of special importance for transporting carbon into the deep sea. Several hypotheses about the mechanism behind this relationship between minerals and organic matter have been raised, such as mineral protection of organic matter or enhanced sinking rates through ballast addition. We examined organic matter decomposition of calcifying and non-calcifying Emiliania huxleyi cultures in an experiment that allowed aggregation and settling in rotating tanks. Biogenic components such as particulate carbon, particulate nitrogen, particulate volume, pigments, transparent exopolymer particles (TEP), and particulate amino acids in suspended particles and aggregates were followed over a period of 30 d. The overall pattern of decrease in organic matter, the amount of recalcitrant organic matter left after 30 d, and the compositional changes within particulate organic matter indicated that cells without a shell are more subject to loss than calcified cells. It is suggested that biogenic calcite helps in the preservation of particulate organic matter (POM) by offering structural support for organic molecules. Over the course of the experiment, half the particulate organic carbon in both calcifying and non-calcifying cultures was partitioned into aggregates and remained so until the end of the experiment. The partial protection of particulate organic matter from solubilization by biominerals and by aggregation that was observed in our experiment may help explain the robustness of the relationship between organic and mineral matter fluxes in the deep ocean.
    Type: Article , PeerReviewed
    Format: text
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  • 7
    Publication Date: 2020-03-19
    Description: To investigate the role of ballasting by biogenic minerals in the export of organic matter in the ocean, a laboratory experiment was conducted comparing aggregate formation and settling velocity of non-calcifying and calcifying strains of the coccolithophore Emiliania huxleyi. Experiments were conducted by making aggregates using a roller table and following aggregate properties during incubation for a period of 40 days. Size, shape, and settling velocities of aggregates were described by image analysis of video pictures recorded during the roller tank incubation. Our results show that biogenic calcite has a strong effect on the formation rate and abundance of aggregates and on aggregate properties such as size, excess density, porosity, and settling velocity. Aggregates of calcifying cells (AGGCAL) formed faster, were smaller and had higher settling velocities, excess densities, and mass than those of non-calcifying cells (AGGNCAL). AGGCAL showed no loss during the duration of the experiment, whereas AGGNCAL decreased in size after 1 month of incubation. Potential mechanisms that can explain the different patterns in aggregate formation are discussed. Comparison of settling velocities of AGGCAL and AGGNCAL with aggregates formed by diatoms furthermore indicated that the ballast effect of calcite is greater than that of opal. Together these results help to better understand why calcite is of major importance for organic matter fluxes to the deep ocean.
    Type: Article , PeerReviewed
    Format: text
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  • 8
    Publication Date: 2024-02-07
    Description: Understanding residence times of plastic in the ocean is a major knowledge gap in plastic pollution studies. Observations report a large mismatch between plastic load estimates from worldwide production and disposal and actual plastics floating at the sea surface. Surveys of the water column, from the surface to the deep sea, are rare. Most recent work, therefore, addressed the “missing plastic” question using modeling or laboratory approaches proposing biofouling and degradation as the main removal processes in the ocean. Through organic matrices, plastic can affect the biogeochemical and microbial cycling of carbon and nutrients. For the first time, we provide in situ measured vertical fluxes of microplastics deploying drifting sediment traps in the North Atlantic Gyre from 50 m down to 600 m depth, showing that through biogenic polymers plastic can be embedded into rapidly sinking particles also known as marine snow. We furthermore show that the carbon contained in plastic can represent up to 3.8% of the total downward flux of particulate organic carbon. Our results shed light on important pathways regulating the transport of microplastics in marine systems and on potential interactions with the marine carbon cycle, suggesting microplastic removal through the “biological plastic pump”.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 9
    Publication Date: 2016-08-17
    Description: Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean The ISME Journal 10, 2158 (September 2016). doi:10.1038/ismej.2016.20 Authors: William D Orsi, Jason M Smith, Shuting Liu, Zhanfei Liu, Carole M Sakamoto, Susanne Wilken, Camille Poirier, Thomas A Richards, Patrick J Keeling, Alexandra Z Worden & Alyson E Santoro
    Print ISSN: 1751-7362
    Electronic ISSN: 1751-7370
    Topics: Biology
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