Description: Characteristics, elevations and ages of 165 samples from various mid-late Holocene features, such as in situ Porites microatolls, in situ reef flats, conglomerates and reworked reef blocks, collected from twelve islands in French Polynesia. This table complements the database on which the mid-late Holocene sea-level curve has been initially reconstructed (Hallmann et al., 2018). Δ modern-fossil represents the difference in elevation between modern and Holocene microatolls at the same study site and in a similar environment (maximum vertical error is of ± 2 cm). NGPF = altimetric reference of French Polynesia. The elevations have been corrected for subsidence based on rates of 0.14 mm/yr for Moorea, 0.05 mm/yr for Bora Bora and Tahaa as well as 0.03 mm/yr for Maupiti, the Gambier Islands and Raivavae. Error values for ages and elevations are 2-sigma. Uncertainties for measured elevations related to NGPF are ± 14 cm for samples from Bora Bora, Maupiti, Raivavae, Tikehau and the Gambier Islands; ± 22 cm for samples from Fakarava, Hao, Makemo, Manihi, Moorea, Rangiroa and Tahaa. Uncertainties for estimated elevations are ± 10 cm for Δ modern-fossil and ± 22 cm for NGPF elevations.

Description: We present a compilation of paleo-circulation proxies during the Holocene from Bermuda Rise core ODP Site 1063. The data set comprises high resolution 231Pa/230Th (including 231Pa,230Th, 232Th, and 238U concentrations accompanied by measurements of biogenic opal concentrations) and Neodymium isotopes, as well as some δ13C from C. wuellerstorfi.

Description: Uranium/Thorium isotopic composition of 165 samples from various mid-late Holocene features, such as in situ Porites microatolls, in situ reef flats, conglomerates and reworked reef blocks, collected from twelve islands in French Polynesia. Recommendations of Dutton et al. (2017) were followed for the presentation of U/Th age data. For each parameter, the first column contains the value and the second column the statistical error. All statistical errors are two standard deviations of the mean (2σ mean). All samples have been corrected for initial 230Th by using a 230Th/232Th activity ratio of 0.66 ± 0.2 (Fietzke et al., 2005). Non-reported data consist of 230Th/232Th ratios which became negative due to background corrections. 238U Concentrations are not corrected for the background.

Description: Ammonia-oxidizing microorganisms are an important source of the greenhouse gas nitrous oxide (N2O) in aquatic environments. Identifying the impact of pH on N2O production by ammonia oxidizers is key to understanding how aquatic greenhouse gas fluxes will respond to naturally occurring pH changes, as well as acidification driven by anthropogenic CO2. We assessed N2O production rates and formation mechanisms by communities of ammonia-oxidizing bacteria (AOB) and archaea (AOA) in a lake and a marine environment, using incubation-based nitrogen (N) stable isotope tracer methods with 15N-labeled ammonium (15NH4+) and nitrite (15NO2-), and also measurements of the natural abundance N and O isotopic composition of dissolved N2O. N2O production during incubations of water from the shallow hypolimnion of Lake Lugano (Switzerland) was significantly higher when the pH was reduced from 7.54 (untreated pH) to 7.20 (reduced pH), while ammonia oxidation rates were similar between treatments. In all incubations, added NH4+ was the source of most of the N incorporated into N2O, suggesting that the main N2O production pathway involved hydroxylamine (NH2OH) and/or NO2- produced by ammonia oxidation during the incubation period. A small but significant amount of N derived from exogenous/added 15NO2- was also incorporated into N2O, but only during the reduced-pH incubations. Mass spectra of this N2O revealed that NH4+ and 15NO2- each contributed N equally to N2O by a "hybrid-N2O" mechanism consistent with a reaction between NH2OH and NO2-, or compounds derived from these two molecules. Nitrifier denitrification was not an important source of N2O. Isotopomeric N2O analyses in Lake Lugano were consistent with incubation results, as 15N enrichment of the internal N vs. external N atoms produced site preferences (25.0-34.4%) consistent with NH2OH-dependent hybrid-N2O production. Hybrid-N2O formation was also observed during incubations of seawater from coastal Namibia with 15NH4+ and NO2-. However, the site preference of dissolved N2O here was low (4.9%), indicating that another mechanism, not captured during the incubations, was important. Multiplex sequencing of 16S rRNA revealed distinct ammonia oxidizer communities: AOB dominated numerically in Lake Lugano, and AOA dominated in the seawater. Potential for hybrid N2O formation exists among both communities, and at least in AOB-dominated environments, acidification may accelerate this mechanism.

Description: Thaumarchaea are among the most abundant microbial groups in the ocean, but controls on their abundance and the distribution and metabolic potential of different subpopulations are poorly constrained. Here, two ecotypes of ammonia-oxidizing thaumarchaea were quantified using ammonia monooxygenase (amoA) genes across the equatorial Pacific Ocean. The shallow, or water column “A” (WCA), ecotype was the most abundant ecotype at the depths of maximum nitrification rates, and its abundance correlated with other biogeochemical indicators of remineralization such as NO3 : Si and total Hg. Metagenomes contained thaumarchaeal genes encoding for the catalytic subunit of the urease enzyme (ureC) at all depths, suggesting that members of both WCA and the deep, water column “B” (WCB) ecotypes may contain ureC. Coupled urea hydrolysis-ammonia oxidation rates were similar to ammonia oxidation rates alone, suggesting that urea could be an important source of ammonia for mesopelagic ammonia oxidizers. Potential inducement of metal limitation of both ammonia oxidation and urea hydrolysis was demonstrated via additions of a strong metal chelator. The water column inventory of WCA was correlated with the depth-integrated abundance of WCB, with both likely controlled by the flux of sinking particulate organic matter, providing strong evidence of vertical connectivity between the ecotypes. Further, depth-integrated amoA gene abundance and nitrification rates were correlated with particulate organic nitrogen flux measured by contemporaneously deployed sediment traps. Together, the results refine our understanding of the controls on thaumarchaeal distributions in the ocean, and provide new insights on the relationship between material flux and microbial communities in the mesopelagic.

Description: This study aims to provide a more detailed understanding of the behavior of 231Pa/230Th under varying ocean circulation regimes. The North Atlantic provides a unique sedimentary setting with its ice-rafted detritus (IRD) layers deposited during glacial times. These layers have been found north of 40° N (Ruddiman Belt) and are most pronounced during Heinrich Stadials. Most of these sediments have been recovered from the deep North Atlantic basin typically below 3000 m water depth. This study reports sedimentological and sediment geochemical data from one of the few sites at intermediate depth of the open North Atlantic (core SU90-I02, 45° N 39° W, 1965 m water depth) within the Ruddiman Belt. The time periods of Heinrich Stadials 1 and 2 of this core were identified with the help of the major element composition by XRF scanning and by IRD counting. Along the core profile, the sedimentary 231Pa/230Th activity ratio has been measured as a kinematic proxy for the circulation strength. The 231Pa/230Th record shows highest values during the Holocene and Last Glacial Maximum, above the natural production ratio of these isotopes. During Heinrich Stadials 1 and 2, when Atlantic meridional overturning circulation was most reduced, the 231Pa/230Th record shows overall lowest values below the production ratio. This behavior is contrary to classical findings of 231Pa/230Th from the northwestern Atlantic where a strong Holocene circulation is associated with low values. However, this behavior at the presented location is in agreement with results from simulations of the 231Pa/230Th-enabled Bern3D Earth system model.

Description: Highlights • Improved understanding of the behaviour of instrumental mass fractionation (IMF). • The effect of matrix elements on IMF is largely associated with plasma conditions that can be quantified with the NAI. • Matrix effects can be systematically and significantly attenuated by tuning of instrumental operating parameters. • A matrix tolerance plasma state is defined for stable barium isotope analysis. • The suggested analytical protocol is expected to be applicable to other stable isotope measurements with MC-ICP-MS. Abstract Stable barium isotope measurements with multi-collector inductively coupled plasma mass spectrometry (MC-ICP-MS) remain an analytical challenge and can be considerably affected by the presence of matrix elements, even when applying double spiking. Therefore significant efforts were invested in previous studies to develop efficient barium purification methods. However, due to the high variability in matrix/barium ratios for diverse sample matrices, potential matrix effects can still not be excluded. While a lot of effort has been invested into improving the chemical separation protocols, the impact of plasma conditions on the accuracy and precision of stable isotope measurements has rarely been considered. Here we present a systematic investigation of the relationship between plasma conditions, instrumental mass fractionation (IMF) and impurity (i.e. matrix) concentrations. The Normalised Ar Index (NAI) and Matrix-Ar Index (MA) are used to quantify MC-ICP-MS plasma conditions and plasma mass loading, respectively. Our results show that the effect of matrix elements on IMF is largely linked to plasma conditions (i.e. NAI) and behaves as a linear function of mass loading (i.e. MA). Accordingly, the matrix effects can be significantly attenuated by increasing the NAI thereby minimising the risk of plasma “over-loading”. The improved understanding of the behaviour of the matrix-induced IMF allows us to define a matrix tolerance plasma state for barium isotope analysis. The accuracy of this recommended method is further assessed by analyses of two well-studied reference materials, the GEOTRACES seawater reference sample SAFe D2 and the carbonate reference material JCp-1. We expect that the analytical protocol described in this study is applicable not only to barium isotope analysis, but also to a wide range of other stable isotope measurements with MC-ICP-MS.

Description: Despite very low concentrations of cobalt in marine waters, cyanobacteria in the genus Prochlorococcus retain the genetic machinery for the synthesis and use of cobalt-bearing cofactors (cobalamins) in their genomes. We explore cobalt metabolism in a Prochlorococcus isolate from the equatorial Pacific Ocean (strain MIT9215) through a series of growth experiments under iron- and cobalt-limiting conditions. Metal uptake rates, quantitative proteomic measurements of cobalamin-dependent enzymes, and theoretical calculations all indicate that Prochlorococcus MIT9215 can sustain growth with less than 50 cobalt atoms per cell, ∼100-fold lower than minimum iron requirements for these cells (∼5,100 atoms per cell). Quantitative descriptions of Prochlorococcus cobalt limitation are used to interpret the cobalt distribution in the equatorial Pacific Ocean, where surface concentrations are among the lowest measured globally but Prochlorococcus biomass is high. A low minimum cobalt quota ensures that other nutrients, notably iron, will be exhausted before cobalt can be fully depleted, helping to explain the persistence of cobalt-dependent metabolism in marine cyanobacteria.