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  • 1
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    Integrating Data Science and Earth Science (2022)
    Springer
    In:  EPIC3Integrating Data Science and Earth Science, Cham, Switzerland, Springer, 148 p., ISBN: 978-3-030-99545-4, ISSN: 2191-589X
    Details
    Publication Date: 2022-07-23
    Description: This open access book presents the results of three years collaboration between earth scientists and data scientists, in developing and applying data science methods for scientific discovery. The book will be highly beneficial for other researchers at senior and graduate level, interested in applying visual data exploration, computational approaches and scientifc workflows.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Book , NonPeerReviewed
    Format: application/pdf
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    PAPER (OA)
  • 2
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    An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis (2018)
    Nature Research
    In:  Scientific Data, 5 (180181).
    Details
    Publication Date: 2021-03-19
    Description: Optical imaging is a common technique in ocean research. Diving robots, towed cameras, drop-cameras and TV-guided sampling gear: all produce image data of the underwater environment. Technological advances like 4K cameras, autonomous robots, high-capacity batteries and LED lighting now allow systematic optical monitoring at large spatial scale and shorter time but with increased data volume and velocity. Volume and velocity are further increased by growing fleets and emerging swarms of autonomous vehicles creating big data sets in parallel. This generates a need for automated data processing to harvest maximum information. Systematic data analysis benefits from calibrated, geo-referenced data with clear metadata description, particularly for machine vision and machine learning. Hence, the expensive data acquisition must be documented, data should be curated as soon as possible, backed up and made publicly available. Here, we present a workflow towards sustainable marine image analysis. We describe guidelines for data acquisition, curation and management and apply it to the use case of a multi-terabyte deep-sea data set acquired by an autonomous underwater vehicle.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1038/sdata.2018.181
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 3
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    Knowledge Transfer by the Global Terrestrial Network for Permafrost (GTN-P) (2018)
    Springer
    In:  EPIC3Building Bridges at the Science-Stakeholder Interface, Building Bridges at the Science-Stakeholder Interface, Springer, 133 p., pp. 73-78, ISBN: 978-3-319-75919-7
    Details
    Publication Date: 2019-08-15
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev , info:eu-repo/semantics/other
    Format: application/pdf
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    PAPER (OA)
  • 4
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    Sensitivities to global change drivers may correlate positively or negatively in a foundational marine macroalga (2019)
    Nature Research
    In:  Scientific Reports, 9 (1). Art.Nr. 4653.
    Details
    Publication Date: 2022-01-31
    Description: Ecological impact of global change is generated by multiple synchronous or asynchronous drivers which interact with each other and with intraspecific variability of sensitivities. In three near-natural experiments, we explored response correlations of full-sibling germling families of the seaweed Fucus vesiculosus towards four global change drivers: elevated CO2 (ocean acidification, OA), ocean warming (OW), combined OA and warming (OAW), nutrient enrichment and hypoxic upwelling. Among families, performance responses to OA and OW as well as to OAW and nutrient enrichment correlated positively whereas performance responses to OAW and hypoxia anti-correlated. This indicates (i) that families robust to one of the three drivers (OA, OW, nutrients) will also not suffer from the two other shifts, and vice versa and (ii) families benefitting from OAW will more easily succumb to hypoxia. Our results may imply that selection under either OA, OW or eutrophication would enhance performance under the other two drivers but simultaneously render the population more susceptible to hypoxia. We conclude that intraspecific response correlations have a high potential to boost or hinder adaptation to multifactorial global change scenarios.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1038/s41598-019-51099-8
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 5
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    Implementation of the Water Framework Directive: Lessons Learned and Future Perspectives for an Ecologically Meaningful Classification Based on Phytoplankton of the Status of Greek Lakes, Mediterranean Region (2019)
    Springer
    In:  Environmental Management, 64 (6). pp. 675-688.
    Details
    Publication Date: 2022-01-31
    Description: The enactment of the Water Framework Directive (WFD) initiated scientific efforts to develop reliable methods for comparing prevailing lake conditions against reference (or nonimpaired) states, using the state of a set biological elements. Drawing a distinction between impaired and natural conditions can be a challenging exercise. Another important aspect is to ensure that water quality assessment is comparable among the different Member States. In this context, the present paper offers a constructive critique of the practices followed during the WFD implementation in Greece by pinpointing methodological weaknesses and knowledge gaps that undermine our ability to classify the ecological quality of Greek lakes. One of the pillars of WDF is a valid lake typology that sets ecological standards transcending geographic regions and national boundaries. The national typology of Greek lakes has failed to take into account essential components. WFD compliance assessments based on the descriptions of phytoplankton communities are oversimplified and as such should be revisited. Exclusion of most chroococcal species from the analysis of cyanobacteria biovolume in Greek lakes/reservoirs and most reservoirs in Spain, Portugal, and Cyprus is not consistent with the distribution of those taxa in lakes. Similarly, the total biovolume reference values and the indices used in classification schemes reflect misunderstandings of WFD core principles. This hampers the comparability of ecological status across Europe and leads to quality standards that are too relaxed to provide an efficient target for the protection of Greek/transboundary lakes such as the ancient Lake Megali Prespa.
    Type: Article , PeerReviewed
    Format: text
    Format: text
    DOI: 10.1007/s00267-019-01226-y
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 6
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    Methodology Used for the Detection and Identification of Microplastics—A Critical Appraisal (2015)
    Springer
    In:  EPIC3Marine Anthropogenic Litter, Marine Anthropogenic Litter, Berlin, Springer, 447 p., pp. 201-227, ISBN: 978-3-319-16510-3
    Details
    Publication Date: 2023-06-21
    Description: Microplastics in aquatic ecosystems and especially in the marine environment represent a pollution of increasing scientific and societal concern, thus, meanwhile a substantial number of studies on microplastics exist. Although first steps towards a standardisation of methodologies used for the detection and identification of microplastics in environmental samples are made, the comparability of data on microplastics is currently hampered by a huge variety of different methodologies which result in the generation of data of extremely different quality and resolution. This chapter reviews the methodology presently used for assessing the concentration of microplastics in the marine environment with focus on the most convenient techniques and approaches. After an overview of non-selective sampling approaches, sample processing and treatment in the laboratory, the reader is introduced to the currently applied techniques for the identification and quantification of microplastics. The subsequent case study on microplastics in sediment samples from the North Sea measured with focal plane array (FPA)-based micro-Fourier transform infrared (micro-FTIR) spectroscopy shows that only 1.4 % of the particles visually resembling microplastics were of synthetic polymer origin. This finding emphasizes the importance of verifying the synthetic polymer origin of potential microplastics. Thus, a burning issue concerning current microplastic research is the generation of standards that allow for the assessment of reliable data on concentrations of microscopic plastic particles and the involved polymers with analytical laboratory techniques such as micro-FTIR or micro-Raman spectroscopy.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
    Format: application/pdf
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    PAPER (OA)
  • 7
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    Transcriptomes and expression profiling of deep-sea corals from the Red Sea provide insight into the biology of azooxanthellate corals (2017)
    Nature Research
    In:  Scientific Reports, 7 (1). Art.No. 6442.
    Details
    Publication Date: 2020-02-06
    Description: Despite the importance of deep-sea corals, our current understanding of their ecology and evolution is limited due to difficulties in sampling and studying deep-sea environments. Moreover, a recent re-evaluation of habitat limitations has been suggested after characterization of deep-sea corals in the Red Sea, where they live at temperatures of above 20 °C at low oxygen concentrations. To gain further insight into the biology of deep-sea corals, we produced reference transcriptomes and studied gene expression of three deep-sea coral species from the Red Sea, i.e. Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. Our analyses suggest that deep-sea coral employ mitochondrial hypometabolism and anaerobic glycolysis to manage low oxygen conditions present in the Red Sea. Notably, we found expression of genes related to surface cilia motion that presumably enhance small particle transport rates in the oligotrophic deep-sea environment. This is the first study to characterize transcriptomes and in situ gene expression for deep-sea corals. Our work offers several mechanisms by which deep-sea corals might cope with the distinct environmental conditions present in the Red Sea As such, our data provide direction for future research and further insight to organismal response of deep-sea coral to environmental change and ocean warming.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1038/s41598-017-05572-x
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 8
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    Transcriptomes and expression profiling of deep-sea corals from the Red Sea provide insight into the biology of azooxanthellate corals (2017)
    Nature Research
    In:  Scientific Reports, 7 (1). Art.No. 6442.
    Details
    Publication Date: 2020-02-06
    Description: Despite the importance of deep-sea corals, our current understanding of their ecology and evolution is limited due to difficulties in sampling and studying deep-sea environments. Moreover, a recent re-evaluation of habitat limitations has been suggested after characterization of deep-sea corals in the Red Sea, where they live at temperatures of above 20 °C at low oxygen concentrations. To gain further insight into the biology of deep-sea corals, we produced reference transcriptomes and studied gene expression of three deep-sea coral species from the Red Sea, i.e. Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. Our analyses suggest that deep-sea coral employ mitochondrial hypometabolism and anaerobic glycolysis to manage low oxygen conditions present in the Red Sea. Notably, we found expression of genes related to surface cilia motion that presumably enhance small particle transport rates in the oligotrophic deep-sea environment. This is the first study to characterize transcriptomes and in situ gene expression for deep-sea corals. Our work offers several mechanisms by which deep-sea corals might cope with the distinct environmental conditions present in the Red Sea As such, our data provide direction for future research and further insight to organismal response of deep-sea coral to environmental change and ocean warming.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1038/s41598-017-05572-x
    Location Call Number Limitation Availability
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 9
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    Development of Mining Technology and Equipment for Seafloor Massive Sulfide Deposits (2016)
    Chinese Mechanical Engineering Society | Springer
    In:  Chinese Journal of Mechanical Engineering, 29 (5). pp. 863-870.
    Details
    Publication Date: 2020-07-27
    Description: Seafloor massive sulfide(SMS) deposits which consist of Au, Ag, Cu, and other metal elements, have been a target of commercial mining in recent decades. The demand for established and reliable commercial mining system for SMS deposits is increasing within the marine mining industry. The current status and progress of mining technology and equipment for SMS deposits are introduced. First, the mining technology and other recent developments of SMS deposits are comprehensively explained and analyzed. The seafloor production tools manufactured by Nautilus Minerals and similar mining tools from Japan for SMS deposits are compared and discussed in turn. Second, SMS deposit mining technology research being conducted in China is described, and a new SMS deposits mining tool is designed according to the environmental requirement. Finally, some new trends of mining technology of SMS deposits are summarized and analyzed. All of these conclusions and results have reference value and guiding significance for the research of SMS deposit mining in China.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.3901/CJME.2016.0815.093
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 10
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    The effect of climate change on the distribution and abundance of marine species in the OSPAR Maritime Area (2008)
    ICES
    In:  , ed. by Tasker, M. L. ICES Cooperative Research Report, 293 . ICES, Copenhagen, Denmark, 45 pp. ISBN 978-87-7482-039-0
    Details
    Publication Date: 2013-02-18
    Type: Book , PeerReviewed
    Format: text
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    OceanRep: Book
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