Description: In this paper, we outline the need for a coordinated international effort toward the building of an open-access Global Ocean Oxygen Database and ATlas (GO2DAT) complying with the FAIR principles (Findable, Accessible, Interoperable, and Reusable). GO2DAT will combine data from the coastal and open ocean, as measured by the chemical Winkler titration method or by sensors (e.g., optodes, electrodes) from Eulerian and Lagrangian platforms (e.g., ships, moorings, profiling floats, gliders, ships of opportunities, marine mammals, cabled observatories). GO2DAT will further adopt a community-agreed, fully documented metadata format and a consistent quality control (QC) procedure and quality flagging (QF) system. GO2DAT will serve to support the development of advanced data analysis and biogeochemical models for improving our mapping, understanding and forecasting capabilities for ocean O2 changes and deoxygenation trends. It will offer the opportunity to develop quality-controlled data synthesis products with unprecedented spatial (vertical and horizontal) and temporal (sub-seasonal to multi-decadal) resolution. These products will support model assessment, improvement and evaluation as well as the development of climate and ocean health indicators. They will further support the decision-making processes associated with the emerging blue economy, the conservation of marine resources and their associated ecosystem services and the development of management tools required by a diverse community of users (e.g., environmental agencies, aquaculture, and fishing sectors). A better knowledge base of the spatial and temporal variations of marine O2 will improve our understanding of the ocean O2 budget, and allow better quantification of the Earth’s carbon and heat budgets. With the ever-increasing need to protect and sustainably manage ocean services, GO2DAT will allow scientists to fully harness the increasing volumes of O2 data already delivered by the expanding global ocean observing system and enable smooth incorporation of much higher quantities of data from autonomous platforms in the open ocean and coastal areas into comprehensive data products in the years to come. This paper aims at engaging the community (e.g., scientists, data managers, policy makers, service users) toward the development of GO2DAT within the framework of the UN Global Ocean Oxygen Decade (GOOD) program recently endorsed by IOC-UNESCO. A roadmap toward GO2DAT is proposed highlighting the efforts needed (e.g., in terms of human resources).

Description: Biomolecular ocean observing and research is a rapidly evolving field that uses omics approaches to describe biodiversity at its foundational level, giving insight into the structure and function of marine ecosystems over time and space. It is an especially effective approach for investigating the marine microbiome. To mature marine microbiome research and operations within a global ocean biomolecular observing network (OBON) for the UN Decade of Ocean Science for Sustainable Development and beyond, research groups will need a system to effectively share, discover, and compare “omic” practices and protocols. While numerous informatic tools and standards exist, there is currently no global, publicly-supported platform specifically designed for sharing marine omics [or any omics] protocols across the entire value-chain from initiating a study to the publication and use of its results. Toward that goal, we propose the development of the Minimum Information for an Omic Protocol (MIOP), a community-developed guide of curated, standardized metadata tags and categories that will orient protocols in the value-chain for the facilitated, structured, and user-driven discovery of suitable protocol suites on the Ocean Best Practices System. Users can annotate their protocols with these tags, or use them as search criteria to find appropriate protocols. Implementing such a curated repository is an essential step toward establishing best practices. Sharing protocols and encouraging comparisons through this repository will be the first steps toward designing a decision tree to guide users to community endorsed best practices.

Description: The UN Decade of Ocean Science for Sustainable Development (Ocean Decade) challenges marine science to better inform and stimulate social and economic development while conserving marine ecosystems. To achieve these objectives, we must make our diverse methodologies more comparable and interoperable, expanding global participation and foster capacity development in ocean science through a new and coherent approach to best practice development. We present perspectives on this issue gleaned from the ongoing development of the UNESCO Intergovernmental Oceanographic Commission (IOC) Ocean Best Practices System (OBPS). The OBPS is collaborating with individuals and programs around the world to transform the way ocean methodologies are managed, in strong alignment with the outcomes envisioned for the Ocean Decade. However, significant challenges remain, including: (1) the haphazard management of methodologies across their lifecycle, (2) the ambiguous endorsement of what is "best" and when and where one method may be applicable vs. another, and (3) the inconsistent access to methodological knowledge across disciplines and cultures. To help address these challenges, we recommend that sponsors and leaders in ocean science and education promote consistent documentation and convergence of methodologies to: create and improve context-dependent best practices; incorporate contextualized best practices into Ocean Decade Actions; clarify who endorses which method and why; create a global network of complementary ocean practices systems; and ensure broader consistency and flexibility in international capacity development.

Description: The deep sea is among the largest, most biologically diverse, yet least-explored ecosystems on Earth. Baseline information on deep-sea biodiversity is crucial for understanding ecosystem functioning and for detecting community changes. Here, we established a baseline of cephalopod community composition and distribution off Cabo Verde, an archipelago in the eastern tropical Atlantic. This baseline served to test the hypothesis that Cabo Verde is biogeographically separated from other Macaronesian archipelagos and allowed the identification of cephalopod species which may play a role in the Macaronesian carbon cycle and oceanic food web. To investigate cephalopod community composition, this study used 746 individual cephalopods obtained by nets (0–1000 m) and 52 cephalopod encounters during video surveys with either towed camera (0–2500 m) or manned submersible (0–375 m). Additionally, environmental DNA (eDNA) metabarcoding on 105 seawater samples (50–2500 m), using an 18S rRNA universal cephalopod primer pair, and a species-specific primer pair for Taningia danae resulted in the detection of 32 cephalopod taxa. When combined, the three methods detected a total of 87 taxa, including 47 distinct species. Each method contributed between 7 and 54% of taxa that were not detected by the other methods, indicating that multiple methodological approaches are needed for optimal deep-sea cephalopod biodiversity assessments. This study documents the occurrences of six species and three genera for the first time in waters surrounding Cabo Verde. Video surveys and eDNA analysis detected Taningia danae recurrently (100–2500 m). eDNA metabarcoding proved to be a powerful tool for cephalopod biodiversity monitoring and complementary to traditional sampling methods. When also including literature records, Cabo Verde hosts at least 102 cephalopod taxa including 30 families and 64 benthic and pelagic species. The total number and species composition of Cabo Verde cephalopods is similar to the Canary Islands and Azores, two known cephalopod biodiversity hotspots, but the Cabo Verde octopus fauna seems to differ. Due to a range of life history characteristics, we hypothesize that the squids Taningia danae (Octopoteuthidae) and Sthenoteuthis pteropus (Ommastrephidae) are important in the carbon cycle of Macaronesia. As a cephalopod biodiversity hotspot Cabo Verde could function as a model region to investigate cephalopod biology and ecology in a rapidly changing Atlantic Ocean.

Description: Maintaining healthy, productive ecosystems in the face of pervasive and accelerating human impacts including climate change requires globally coordinated and sustained observations of marine biodiversity. Global coordination is predicated on an understanding of the scope and capacity of existing monitoring programs, and the extent to which they use standardized, interoperable practices for data management. Global coordination also requires identification of gaps in spatial and ecosystem coverage, and how these gaps correspond to management priorities and information needs. We undertook such an assessment by conducting an audit and gap analysis from global databases and structured surveys of experts. Of 371 survey respondents, 203 active, long-term (〉5 years) observing programs systematically sampled marine life. These programs spanned about 7% of the ocean surface area, mostly concentrated in coastal regions of the United States, Canada, Europe, and Australia. Seagrasses, mangroves, hard corals, and macroalgae were sampled in 6% of the entire global coastal zone. Two-thirds of all observing programs offered accessible data, but methods and conditions for access were highly variable. Our assessment indicates that the global observing system is largely uncoordinated which results in a failure to deliver critical information required for informed decision-making such as, status and trends, for the conservation and sustainability of marine ecosystems and provision of ecosystem services. Based on our study, we suggest four key steps that can increase the sustainability, connectivity and spatial coverage of biological Essential Ocean Variables in the global ocean: (1) sustaining existing observing programs and encouraging coordination among these; (2) continuing to strive for data strategies that follow FAIR principles (findable, accessible, interoperable, and reusable); (3) utilizing existing ocean observing platforms and enhancing support to expand observing along coasts of developing countries, in deep ocean basins, and near the poles; and (4) targeting capacity building efforts. Following these suggestions could help create a coordinated marine biodiversity observing system enabling ecological forecasting and better planning for a sustainable use of ocean resources.

Description: Aquaculture is one of the fastest growing food production sectors and has great potential for food security and livelihoods. However, it generates concerning consequences for the environment, including chemical and biological pollution, disease outbreaks, unsustainable feeds and competition for coastal space. Recent investigations are focusing on sustainable techniques (e.g., polyculture, offshore facilities) to improve the relationship between the industry, environment and society. This review provides an overview of the main factors of ecological concern within marine finfish aquaculture, their interactions with the environment, and highlights sustainable alternatives that are currently in use or development. Adequate environmental monitoring and location of farms, the reduction and exploitation of wastes and chemicals being used is crucial to ensure the growth and continuity of aquaculture production.

Description: Marine imaging has evolved from small, narrowly focussed applications to large-scale applications covering areas of several hundred square kilometers or time series covering observation periods of several months. The analysis and interpretation of the accumulating large volume of digital images or videos will continue to challenge the marine science community to keep this process efficient and effective. It is safe to say that any strategy will rely on some software platform supporting manual image and video annotation, either for a direct manual annotation-based analysis or for collecting training data to deploy a machine learning–based approach for (semi-)automatic annotation. This paper describes how computer-assisted manual full-frame image and video annotation is currently performed in marine science and how it can evolve to keep up with the increasing demand for image and video annotation and the growing volume of imaging data. As an example, observations are presented how the image and video annotation tool BIIGLE 2.0 has been used by an international community of more than one thousand users in the last 4 years. In addition, new features and tools are presented to show how BIIGLE 2.0 has evolved over the same time period: video annotation, support for large images in the gigapixel range, machine learning assisted image annotation, improved mobility and affordability, application instance federation and enhanced label tree collaboration. The observations indicate that, despite novel concepts and tools introduced by BIIGLE 2.0, full-frame image and video annotation is still mostly done in the same way as two decades ago, where single users annotated subsets of image collections or single video frames with limited computational support. We encourage researchers to review their protocols for education and annotation, making use of newer technologies and tools to improve the efficiency and effectivity of image and video annotation in marine science.

Description: A thorough and reliable assessment of changes in sea surface water temperatures (SSWTs) is essential for understanding the effects of global warming on long-term trends in marine ecosystems and their communities. The first long-term temperature measurements were established almost a century ago, especially in coastal areas, and some of them are still in operation. However, while in earlier times these measurements were done by hand every day, current environmental long-term observation stations (ELTOS) are often fully automated and integrated in cabled underwater observatories (UWOs). With this new technology, year-round measurements became feasible even in remote or difficult to access areas, such as coastal areas of the Arctic Ocean in winter, where measurements were almost impossible just a decade ago. In this context, there is a question over what extent the sampling frequency and accuracy influence results in long-term monitoring approaches. In this paper, we address this with a combination of lab experiments on sensor accuracy and precision and a simulated sampling program with different sampling frequencies based on a continuous water temperature dataset from Svalbard, Arctic, from 2012 to 2017. Our laboratory experiments showed that temperature measurements with 12 different temperature sensor types at different price ranges all provided measurements accurate enough to resolve temperature changes over years on a level discussed in the literature when addressing climate change effects in coastal waters. However, the experiments also revealed that some sensors are more suitable for measuring absolute temperature changes over time, while others are more suitable for determining relative temperature changes. Our simulated sampling program in Svalbard coastal waters over 5 years revealed that the selection of a proper sampling frequency is most relevant for discriminating significant long-term temperature changes from random daily, seasonal, or interannual fluctuations. While hourly and daily sampling could deliver reliable, stable, and comparable results concerning temperature increases over time, weekly sampling was less able to reliably detect overall significant trends. With even lower sampling frequencies (monthly sampling), no significant temperature trend over time could be detected. Although the results were obtained for a specific site, they are transferable to other aquatic research questions and non-polar regions.

Description: As species respond to warming water temperatures, fishers dependent upon such species are being compelled to make choices concerning harvest strategies. Should they “follow fish” to new fishing grounds? Should they change their mix of target species? Should they relocate their operations to new ports? We examined how fishing communities in the Northeast United States —a hotspot of recent warming—have already responded to documented shifts in the distribution and abundance of fluke, red and silver hake. We focused on groundfish trawl communities that historically targeted these species and examined their “at-sea” responses by combining qualitative interviews with quantitative analysis of fishing records and ecological surveys. Three distinct responses emerged: shifting fishing grounds, shifting target species, and shifting port of landing. Our research finds that following the fish is rare and only occurred in one of the assessed communities, the large trawler community of Beaufort, North Carolina. The more common response was a shift in target species and a change in catch composition. However, regulations and markets often constrained the ability to take advantage of a changing mix of species within fishing grounds. Indeed, the overall species diversity in catch has declined among all of our focal communities suggesting that communities have lost the ability to be flexible when it may be most needed as a response to climate change. Additionally, the high value of fluke and the need to land in southern states with higher quota allocations is likely a driver of the changing nature of “community” with increasing vessels landing outside their home port, especially when landing fluke. Our findings suggest that fidelity to historical fishing grounds combined with perceiving environmental change as non-permanent, predispose many fishers to trust in “cyclicality” and return of species over time. However, this strategy may make those communities unable or unwilling to “follow fish” more vulnerable to changes in distribution and abundance due to climate change. Our findings have the potential to directly inform resource management policies as well as more deliberate adaptations by communities themselves as they strive to address the imminent risks of climate change.

Description: The abundance and distribution of plastic debris at the sea surface shows considerable variability over different spatial scales. Some of the oceanographic processes at small (〈1 km) and submeso (1–10 km) scales manifest themselves as slicks at the sea surface, which might have the potential to concentrate organisms and particles (such as positively buoyant plastics), putting species that feed in these areas at risk of ingesting plastics. Slicks can be filaments, lines, meanders, or patches, which are lighter in color and smoother in surface roughness compared to the surrounding area. Here we tested the hypothesis that passive particles (including plastics) and organisms are aggregated in the surface waters within these slicks. According to their main features (orientation to coast and/or wind), the studied slicks were most likely generated by oceanographic processes such as topographically controlled fronts, other types of fronts and internal waves. Neuston samples were collected from the sea surface inside and outside of slicks (n = 11 sites with slicks) in the coastal waters of Rapa Nui (Easter Island) during two campaigns in austral summer (January 2018) and autumn (April 2019). In general, passive particles, including plastics, exuviae, eggs and foraminiferans, were found more frequently inside than outside the slicks. In some cases, motile zooplankton organisms such as chaetognaths, vertically migrating crustaceans and early developmental stages (EDS) of fish were also more common within the slicks. In addition, a positive relationship was found between plastics and planktonic organisms such as foraminiferans, snails and jellyfish (e.g., Velella velella), although a strong correlation was also found with fish EDS and chaetognaths. These results suggest that surface slicks are areas of aggregation for both passive particles and active organisms, thus playing an important ecological role in food retention and particle concentration where the risk of plastic ingestion by fish and seabirds is enhanced