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  • 11
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    PANGAEA
    In:  Supplement to: Hansen, Per Juel; Lundholm, Nina; Rost, Björn (2007): Growth limitation in marine red-tide dinoflagellates: effects of pH versus inorganic carbon availability. Marine Ecology Progress Series, 334, 63-71, https://doi.org/10.3354/meps334063
    Publication Date: 2023-07-07
    Description: The effects of dissolved inorganic carbon (DIC) on the growth of 3 red-tide dinoflagellates (Ceratium lineatum, Heterocapsa triquetra and Prorocentrum minimum) were studied at pH 8.0 and at higher pH levels, depending upon the pH tolerance of the individual species. The higher pH levels chosen for experiments were 8.55 for C. lineatum and 9.2 for the other 2 species. At pH 8.0, which approximates the pH found in the open sea, the maximum growth in all species was maintained until the total DIC concentration was reduced below ~0.4 and 0.2 mM for C. lineatum and the other 2 species, respectively. Growth compensation points (concentration of inorganic carbon needed for maintenance of cells) were reached at ~0.18 and 0.05 mM DIC for C. lineatum and the other 2 species, respectively. At higher pH levels, maximum growth rates were lower compared to growth at pH 8, even at very high DIC concentrations, indicating a direct pH effect on growth. Moreover, the concentration of bio-available inorganic carbon (CO2 + HCO3-) required for maintenance as well as the half-saturation constants were increased considerably at high pH compared to pH 8.0. Experiments with pH-drift were carried out at initial concentrations of 2.4 and 1.2 mM DIC to test whether pH or DIC was the main limiting factor at a natural range of DIC. Independent of the initial DIC concentrations, growth rates were similar in both incubations until pH had increased considerably. The results of this study demonstrated that growth of the 3 species was mainly limited by pH, while inorganic carbon limitation played a minor role only at very high pH levels and low initial DIC concentrations.
    Keywords: Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Ceratium lineatum; Chromista; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; EXP; Experiment; Growth/Morphology; Hansen_etal_07/F1; Hansen_etal_07/F2; Laboratory experiment; Laboratory strains; Myzozoa; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Pelagos; Phytoplankton; Prorocentrum minimum; Single species
    Type: Dataset
    Format: application/zip, 2 datasets
    Location Call Number Limitation Availability
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  • 12
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    PANGAEA
    In:  Supplement to: Van de Waal, Dedmer B; John, Uwe; Ziveri, Patrizia; Reichart, Gert-Jan; Hoins, Mirja; Sluijs, Appy; Rost, Björn (2013): Ocean Acidification Reduces Growth and Calcification in a Marine Dinoflagellate. PLoS ONE, 8(6), e65987, https://doi.org/10.1371/journal.pone.0065987
    Publication Date: 2023-08-03
    Description: Ocean acidification is considered a major threat to marine ecosystems and may particularly affect calcifying organisms such as corals, foraminifera and coccolithophores. Here we investigate the impact of elevated pCO2 and lowered pH on growth and calcification in the common calcareous dinoflagellate Thoracosphaera heimii. We observe a substantial reduction in growth rate, calcification and cyst stability of T. heimii under elevated pCO2. Furthermore, transcriptomic analyses reveal CO2 sensitive regulation of many genes, particularly those being associated to inorganic carbon acquisition and calcification. Stable carbon isotope fractionation for organic carbon production increased with increasing pCO2 whereas it decreased for calcification, which suggests interdependence between both processes. We also found a strong effect of pCO2 on the stable oxygen isotopic composition of calcite, in line with earlier observations concerning another T. heimii strain. The observed changes in stable oxygen and carbon isotope composition of T. heimii cysts may provide an ideal tool for reconstructing past seawater carbonate chemistry, and ultimately past pCO2. Although the function of calcification in T. heimii remains unresolved, this trait likely plays an important role in the ecological and evolutionary success of this species. Acting on calcification as well as growth, ocean acidification may therefore impose a great threat for T. heimii.
    Keywords: Calculated; Carbon, inorganic, particulate, per cell; Carbon, organic, particulate, per cell; Carbon dioxide; Cysts; Fractionation of calcite; Fractionation of organic carbon; Growth rate; Mediterranean Sea Acidification in a Changing Climate; MedSeA; Ratio; Treatment; δ18O, calcite; δ18O, dissolved inorganic carbon
    Type: Dataset
    Format: text/tab-separated-values, 144 data points
    Location Call Number Limitation Availability
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  • 13
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    PANGAEA
    In:  Supplement to: Hoppe, Clara Jule Marie; Klaas, Christine; Ossebaar, Sharyn; Soppa, Mariana A; Cheah, Wee; Laglera, Luis Miguel; Santos-Echeandía, Juan; Rost, Björn; Wolf-Gladrow, Dieter A; Bracher, Astrid; Hoppema, Mario; Strass, Volker H; Trimborn, Scarlett (2017): Controls of primary production in two phytoplankton blooms in the Antarctic Circumpolar Current. Deep Sea Research Part II: Topical Studies in Oceanography, 138, 63-73, https://doi.org/10.1016/j.dsr2.2015.10.005
    Publication Date: 2023-10-18
    Description: The Antarctic Circumpolar Current has a high potential for primary production and carbon sequestration through the biological pump. In the current study, two large-scale blooms observed in 2012 during a cruise with R.V. Polarstern were investigated with respect to phytoplankton standing stocks, primary productivity and nutrient budgets. While net primary productivity was similar in both blooms, chlorophyll a -specific photosynthesis was more efficient in the bloom closer to the island of South Georgia (39 °W, 50 °S) compared to the open ocean bloom further east (12 °W, 51 °S). We did not find evidence for light being the driver of bloom dynamics as chlorophyll standing stocks up to 165 mg/m² developed despite mixed layers as deep as 90 m. Since the two bloom regions differ in their distance to shelf areas, potential sources of iron vary. Nutrient (nitrate, phosphate, silicate) deficits were similar in both areas despite different bloom ages, but their ratios indicated more pronounced iron limitation at 12 °W compared to 39 °W. While primarily the supply of iron and not the availability of light seemed to control onset and duration of the blooms, higher grazing pressure could have exerted a stronger control toward the declining phase of the blooms.
    Type: Dataset
    Format: application/zip, 3 datasets
    Location Call Number Limitation Availability
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  • 14
    Publication Date: 2023-10-18
    Keywords: ANT-XXVIII/3; Area/locality; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Elevation of event; Event label; Latitude of event; Longitude of event; Nitrate; Phosphate; Polarstern; PS79; PS79/087-2; PS79/088-1; PS79/092-1; PS79/093-1; PS79/095-3; PS79/096-1; PS79/101-1; PS79/102-1; PS79/103-1; PS79/104-1; PS79/105-1; PS79/106-1; PS79/107-1; PS79/108-1; PS79/109-1; PS79/110-1; PS79/111-1; PS79/112-1; PS79/114-2; PS79/115-1; PS79/116-1; PS79/117-1; PS79/118-1; PS79/119-3; PS79/120-1; PS79/121-1; PS79/122-2; PS79/123-1; PS79/124-1; PS79/125-1; PS79/126-1; PS79/127-2; PS79/128-10; PS79/137-7; PS79/144-2; PS79/145-1; PS79/146-1; PS79/147-1; PS79/148-1; PS79/149-1; PS79/150-1; PS79/151-1; PS79/152-1; PS79/153-1; PS79/154-1; PS79/155-1; PS79/156-1; PS79/157-1; PS79/158-1; PS79/159-1; PS79/160-1; PS79/161-1; PS79/162-2; PS79/163-1; PS79/164-1; Silicate; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 2589 data points
    Location Call Number Limitation Availability
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  • 15
    Publication Date: 2023-10-18
    Keywords: ANT-XXVIII/3; Area/locality; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Elevation of event; Event label; Latitude of event; Longitude of event; Nitrate; Nitrate/Phosphate deficit ratio; Nitrate deficit, integrated; Phosphate; Phosphate deficit, integrated; Polarstern; PS79; PS79/085-3; PS79/086-2; PS79/087-2; PS79/088-1; PS79/092-1; PS79/093-1; PS79/095-3; PS79/096-1; PS79/101-1; PS79/102-1; PS79/103-1; PS79/104-1; PS79/105-1; PS79/106-1; PS79/107-1; PS79/108-1; PS79/109-1; PS79/110-1; PS79/111-1; PS79/112-1; PS79/114-2; PS79/115-1; PS79/116-1; PS79/117-1; PS79/118-1; PS79/119-3; PS79/120-1; PS79/121-1; PS79/122-2; PS79/123-1; PS79/124-1; PS79/125-1; PS79/126-1; PS79/127-2; PS79/128-10; PS79/137-7; PS79/144-2; PS79/145-1; PS79/146-1; PS79/147-1; PS79/148-1; PS79/149-1; PS79/150-1; PS79/151-1; PS79/152-1; PS79/153-1; PS79/154-1; PS79/155-1; PS79/156-1; PS79/157-1; PS79/158-1; PS79/159-1; PS79/160-1; PS79/161-1; PS79/162-2; PS79/163-1; PS79/164-1; PS79/165-5; PS79/166-1; PS79/167-1; PS79/168-1; PS79/169-1; PS79/170-1; PS79/171-1; PS79/172-1; PS79/173-1; Silicate; Silicate/Nitrate deficite ratio; Silicate deficit, integrated; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 580 data points
    Location Call Number Limitation Availability
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  • 16
    Publication Date: 2023-10-18
    Keywords: ANT-XXVIII/3; Area/locality; Chlorophyll a, areal concentration; CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Elevation of event; Event label; Latitude of event; Longitude of event; Mixed layer depth; Photosynthetic efficiency normalized to chlorophyll a biomass; Polarstern; Primary production, integrated; PS79; PS79/085-3; PS79/086-2; PS79/091-5; PS79/114-2; PS79/128-10; PS79/136-8; PS79/137-7; PS79/138-2; PS79/139-3; PS79/140-12; PS79/147-1; PS79/149-1; PS79/155-1; PS79/160-1; PS79/165-5; PS79/168-1; PS79/169-1; PS79/170-1; PS79/174-9; PS79/175-1; Radiation, photosynthetically active per day; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 116 data points
    Location Call Number Limitation Availability
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  • 17
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    PANGAEA
    In:  Supplement to: Wolf, Klara K E; Hoppe, Clara Jule Marie; Rost, Björn; John, Uwe; Collins, Sinéad; Romanelli, Elisa; Weigand, Hannah (2019): Company matters: The presence of other genotypes alters traits and intraspecific selection in an Arctic diatom under climate change. Global Change Biology, 25(9), 2869-2884, https://doi.org/10.1111/gcb.14675
    Publication Date: 2023-12-02
    Description: We conducted incubation experiments with the diatom Thalassiosira hyalina under present-day and future temperature and pCO2 treatments. Six fresh isolates from the same Svalbard population were incubated as mono- and multi-strain cultures. We were able to closely follow intraspecific selection within an artificial population in a 2-week experiment using microsatellites and allele-specific quantitative PCR. Our results show that there is substantial variation in how strains of the same species cope physiologically with the tested environments. Although highly reproducible within treatments, changes in genotype composition, production rates and cellular quotas in the multi-strain cultures differed from monoculture performance. Interestingly, we only detected significant strain sorting in those populations exposed to the future treatment. We show that individuals adjust their phenotype not only in response to their physico-chemical, but also to their biological surroundings.
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 58.6 kBytes
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  • 18
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    PANGAEA
    In:  Supplement to: Hoppe, Clara Jule Marie; Langer, Gerald; Rokitta, Sebastian D; Wolf-Gladrow, Dieter A; Rost, Björn (2012): Implications of observed inconsistencies in carbonate chemistry measurements for ocean acidification studies. Biogeosciences, 9, 2401-2405, https://doi.org/10.5194/bg-9-2401-2012
    Publication Date: 2023-11-25
    Description: The growing field of ocean acidification research is concerned with the investigation of organism responses to increasing pCO2 values. One important approach in this context is culture work using seawater with adjusted CO2 levels. As aqueous pCO2 is difficult to measure directly in small-scale experiments, it is generally calculated from two other measured parameters of the carbonate system (often AT, CT or pH). Unfortunately, the overall uncertainties of measured and subsequently calculated values are often unknown. Especially under high pCO2, this can become a severe problem with respect to the interpretation of physiological and ecological data. In the few datasets from ocean acidification research where all three of these parameters were measured, pCO2 values calculated from AT and CT are typically about 30% lower (i.e. ~300 µatm at a target pCO2 of 1000 µatm) than those calculated from AT and pH or CT and pH. This study presents and discusses these discrepancies as well as likely consequences for the ocean acidification community. Until this problem is solved, one has to consider that calculated parameters of the carbonate system (e.g. pCO2, calcite saturation state) may not be comparable between studies, and that this may have important implications for the interpretation of CO2 perturbation experiments.
    Keywords: Alkalinity, total; Carbon dioxide; EPOCA; European Project on Ocean Acidification; Mediterranean Sea Acidification in a Changing Climate; MedSeA; Method comment; pH; Phosphate; Salinity; Silicate; Temperature, water; Type
    Type: Dataset
    Format: text/tab-separated-values, 197 data points
    Location Call Number Limitation Availability
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  • 19
    Publication Date: 2024-02-15
    Description: Phaeodactylum tricornutum strain CCAP 1052/1A was cultivated at 6°C and 15°C under controlled conditions (32 salinity, F/2 medium, 400 µatm pCO2, 100 µmol photons m-2 s-2 light intentsity 16:8 light:dark cycle) in semi-continous batch cultures. We assessed the carbonate chemistry (pH, total alkalinity, dissolved inorganic carbon), growth rates, particulate organic carbon and nitrogen (POC and PON), chlorophyll a quota (Chl a), POC:PON ratios, Chl a:POC ratios as well as production rates at both acclimation temperatures. Additionally, we performed biological invivo assays to measure rates of gross photosynthetic oxygen release, gross photosynthetic carbon uptake, respiratory oxygen uptake and respiratory carbon release using membrane-inlet mass-spectrometry. Assays were performed in photosynthesis-irradiance-(PI-)curves of increasing light intensity (0, 50, 150, 250, 400 µmol photons m-2 s-2). First rates were measured under acclimation temperature (6°C and 15°C), directly afterwards, the assay temperature was abruptly shifted to 15°C or 6°C, respectively, and the PI-curve measurement was repeated, so that 6°C acclimated cells were measured at 15°C and 15°C acclimated cells were measured at 6°C. Q10 factors were calculated from acclimated cells und the respective temperature shift. Photosynthetic and respiratory quotients were calculated for acclimated cells as well as after the abrupt temperature shift. PI-parameters, i.e. maximum photosynthesis rate, light use efficiency and light saturation index were calculated. All experiments were performed in laboratories at the Alfred-Wegener-Institute Bremerhaven.
    Keywords: Alkalinity, total; Calculated; Calculation according to Rehder et al. (2023); Calculation according to Rokitta & Rost (2012); Carbon, inorganic, dissolved; Carbon, organic, particulate, per cell; Carbon, organic, particulate/Nitrogen, organic, particulate ratio; Chlorophyll a/particulate organic carbon ratio; Chlorophyll a per cell; Coulter Counter (Beckman Coulter); Date/time end, experiment; Date/time start, experiment; Diatom; Elemental analyzer, EuroVector, EA 3000; Experiment; Factor quantifying temperature dependent change of rates of processes; Generation; Gross photosynthetic carbon uptake rate, per chlorophyll a; Gross photosynthetic oxygen release rate, per chlorophyll a; Growth rate; Laboratory; Laboratory experiment; Laboratory fluorometer, Turner, Trilogy; Light saturation index; Light use efficiency; Maximum photosynthetic carbon uptake rate, per chlorophyll a; Maximum photosynthetic oxygen release rate, per chlorophyll a; Measured with colorimetric assay on QuAAtro continuous segmented flow analyzer (Seal Analytical); Medium; Membrane inlet mass spectrometer (MIMS), GV Instruments, Isoprime; Nitrogen, organic, particulate, per cell; Particulate organic carbon production per cell; pH; Phaeodactylum tricornutum; Photosynthesis; Photosynthetic quotient; Physiological performance; Phytoplankton; Respiration; Respiratory carbon release rate, per chlorophyll a; Respiratory oxygen uptake rate, per chlorophyll a; Respiratory quotient; Salinity; Sample ID; Sampling date/time, experiment; Species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Strain; Temperature; Titration analyzer, Schott Instruments, TitroLine alpha plus; Treatment: light:dark cycle; Treatment: light intensity; Treatment: temperature; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 736 data points
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  • 20
    Publication Date: 2024-01-26
    Description: We assessed the responses of solitary cells of Arctic Phaeocystis pouchetii (Strain PS78) grown under a matrix of temperature (2°C vs. 6°C), light intensity (55 vs. 160 μmol photons m-2 s-1) and CO2 partial pressures (pCO2; 400 vs. 1000 μatm). Before the experiments, the strain (isolated during Polarstern cruise PS78 in 2011) was kept as stock culture at 1° in 0.2 µm sterile-filtered Arctic seawater (Salinity 33), enriched with vitamins and trace metals according to F/2 medium (Guillard & Ryther, 1962). Nitrate and phosphate were added in concentrations of 100 and 6 µmol L-1, respectively. Experiments were conducted between May 2016 and September 2017 at the Alfred-Wegener-Institute, using standardized media and continuous light exposition. Next to acclimation parameters (growth rates, particulate and dissolved organic carbon and nitrogen, chlorophyll a content), we measured physiological processes in-vivo (electron transport rates and net photosynthesis) using fast-repetition rate fluorometry and membrane-inlet mass spectrometry.
    Keywords: Alkalinity, total; Bottle incubation; calculated from carbonate chemistry using the CO2Sys Excel sheet (Pierrot, Lewis & Wallace, 2006); calculated from chlorophyll a (chl a) and particulate organic carbon (POC) quota; calculated from growth rate and particulate organic carbon (POC) quota; calculated from growth rate and particulate organic nitrogen (PON) quota; calculated from particulate organic carbon (POC) and particulate organic nitrogen (PON) quota; Carbon, inorganic, dissolved; Carbon dioxide, partial pressure; Colorimetric detection, TRAACs continuous flow autoanalyzer, according to the method of Stoll et al. (2001); Coulter counter, Beckman Coulter, Multisizer 3; DATE/TIME; Electron transport rate, relative; Elemental analyzer, EuroVector, EuroEA; EXP; Experiment; Experimental treatment; Fitted parameter using the photosynthesis vs. Irradiance equation from Rokitta & Rost (2012), raw data obtained using a membrane-inlet mass spectrometer (MIMS) as described in Kottmeier, Rokitta & Rost (2016); Fitted parameter using the photosynthesis vs. Irradiance equation from Rokitta & Rost (2012); raw data obtained using a fast-repetition rate fluoremeter (FRRF), FastOcean PTX with FastAct Laboratory system, Chelsea Technologies after Oxborough et al. (201; Fluorometer, Turner Designs, TD-700, using acidification method (Knap et al., 1996); Fram Strait; Identification; Initial slope of the photosynthesis-irradiance curve; Initial slope of the photosynthesis-irradiance curve, relative electron transfer rate per unit light; Light; Light acclimation index; Maximum photosynthesis rate, oxygen, per chlorophyll a; model simulation; pCO2; pCO2 mixed from CO2-free air and pure CO2 with a custom built gas mixing system; pH; pH 826 mobile handheld device, with Aquatrode Plus, Metrohm; Phaeocystis_pouchetii_PS78; Phaeocystis pouchetii; Phaeocystis pouchetii, carbon, organic, particulate/nitrogen, organic, particulate ratio; Phaeocystis pouchetii, chlorophyll a/carbon, organic, particulate ratio; Phaeocystis pouchetii, chlorophyll a quota per cell; Phaeocystis pouchetii, growth rate; Phaeocystis pouchetii, particulate organic carbon production per cell; Phaeocystis pouchetii, particulate organic carbon quota per cell; Phaeocystis pouchetii, particulate organic nitrogen production per cell; Phaeocystis pouchetii, particulate organic nitrogen quota per cell; Phytoplankton; RCP8.5; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Strain; Temperature; Temperature, water; Thermometer, internal, Aquatrode Plus, Metrohm; Treatment: light intensity; Treatment: partial pressure of carbon dioxide; Treatment: temperature; Type of study; Universal light meter & data logger, WALZ, ULM-500, with 4Pi sensor, LI-COR
    Type: Dataset
    Format: text/tab-separated-values, 908 data points
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