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  • 2015-2019  (39)
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  • 1
    Publication Date: 2020-02-12
    Description: The SWATH-D experiment is dense deployment of 154 seismic stations in the Central and Eastern Alps between Italy and Austria, complementing the larger-scale sparser AlpArray Seismic Network (AASN). SWATH-D will provide high resolution images from the surface into the upper mantle, and allow observations of local seismicity. SWATH-D focuses on a key area of the Alps where the hypothesized flip in subduction polarity has been suggested, and where an earlier seismic profile (TRANSALP) has imaged a jump in the Moho. Where mains power is available (at ca. 80 sites) stations are providing realtime data via the cellphone network and are equipped with Güralp CMG-3EPSC (60s) seismometers and Earth Data Recorders EDR-210. The rest of the stations are offline and consist mainly of Nanometrics Trillium Compact (120s) and Güralp CMG-3EPSC (60s) seismometers equipped with either Omnirecs CUBE3 or PR6-24 Earth Data Loggers. All stations are equipped with external GPS antennas and the sampling rate is 100 Hz (Heit, et al., 2018). The network will operate for 2 years starting in July 2017. The Swath-D data will be used directly by 20 individual proposals of the MB-4D Priority Program (Mountain Building Processes in Four Dimensions, 2017) of the German Research Foundation (DFG) and data products derived from it will contribute to additional 13 proposals. SWATH-D is thus an important link between the MB-4D Priority Program and the international AlpArray communities and a scientific service to many of the proposals within the DFG Priority Program. Waveform data are available from the GEOFON data centre, under network code ZS, and are embargoed until August 2023. After the end of embargo, data will be openly available under CC-BY 4.0 license according to GIPP-rules.
    Language: English
    Type: info:eu-repo/semantics/workingPaper
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  • 2
    Publication Date: 2020-02-12
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
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    In:  [Talk] In: AGU Fall Meeting 2017, 11.12 - 15.12.2017, New Orleans, USA .
    Publication Date: 2019-09-23
    Type: Conference or Workshop Item , NonPeerReviewed
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  • 4
    Publication Date: 2016-02-20
    Description: Cellulose and xylan are two major components of lignocellulosic biomass, which represents a potentially important energy source, as it is abundant and can be converted to methane by microbial action. However, it is recalcitrant to hydrolysis, and the establishment of a complete anaerobic digestion system requires a specific repertoire of microbial functions. In this study, we maintained 2-year enrichment cultures of anaerobic digestion sludge amended with cellulose or xylan to investigate whether a cellulose- or xylan-digesting microbial system could be assembled from sludge previously used to treat neither of them. While efficient methane-producing communities developed under mesophilic (35°C) incubation, they did not under thermophilic (55°C) conditions. Illumina amplicon sequencing results of the archaeal and bacterial 16S rRNA genes revealed that the mature cultures were much lower in richness than the inocula and were dominated by single archaeal (genus Methanobacterium ) and bacterial (order Clostridiales ) groups, although at finer taxonomic levels the bacteria were differentiated by substrates. Methanogenesis was primarily via the hydrogenotrophic pathway under all conditions, although the identity and growth requirements of syntrophic acetate-oxidizing bacteria were unclear. Incubation conditions (substrate and temperature) had a much greater effect than inoculum source in shaping the mature microbial community, although analysis based on unweighted UniFrac distance found that the inoculum still determined the pool from which microbes could be enriched. Overall, this study confirmed that anaerobic digestion sludge treating nonlignocellulosic material is a potential source of microbial cellulose- and xylan-digesting functions given appropriate enrichment conditions.
    Print ISSN: 0099-2240
    Electronic ISSN: 1098-5336
    Topics: Biology
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  • 5
    Publication Date: 2016-03-30
    Description: Production of ribosomally synthesized and posttranslationally modified peptides (RiPPs) has rarely been reported in fungi, even though organisms of this kingdom have a long history as a prolific source of natural products. Here we report an investigation of the phomopsins, antimitotic mycotoxins. We show that phomopsin is a fungal RiPP...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 6
    Publication Date: 2016-03-16
    Description: Non–small cell lung cancer patients carrying oncogenic EGFR mutations initially respond to EGFR-targeted therapy, but later elicit minimal response due to dose-limiting toxicities and acquired resistance. EGF816 is a novel, irreversible mutant-selective EGFR inhibitor that specifically targets EGFR-activating mutations arising de novo and upon resistance acquisition, while sparing wild-type (WT) EGFR. EGF816 potently inhibited the most common EGFR mutations L858R, Ex19del, and T790M in vitro, which translated into strong tumor regressions in vivo in several patient-derived xenograft models. Notably, EGF816 also demonstrated antitumor activity in an exon 20 insertion mutant model. At levels above efficacious doses, EGF816 treatment led to minimal inhibition of WT EGFR and was well tolerated. In single-dose studies, EGF816 provided sustained inhibition of EGFR phosphorylation, consistent with its ability for irreversible binding. Furthermore, combined treatment with EGF816 and INC280, a cMET inhibitor, resulted in durable antitumor efficacy in a xenograft model that initially developed resistance to first-generation EGFR inhibitors via cMET activation. Thus, we report the first preclinical characterization of EGF816 and provide the groundwork for its current evaluation in phase I/II clinical trials in patients harboring EGFR mutations, including T790M. Cancer Res; 76(6); 1591–602. ©2016 AACR.
    Print ISSN: 0008-5472
    Electronic ISSN: 1538-7445
    Topics: Medicine
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  • 7
    Publication Date: 2016-02-02
    Description: Motivation: Computationally generated non-native protein structure conformations (or decoys) are often used for designing protein folding simulation methods and force fields. However, almost all the decoy sets currently used in literature suffer from uneven root mean square deviation (RMSD) distribution with bias to non-protein like hydrogen-bonding and compactness patterns. Meanwhile, most protein decoy sets are pre-calculated and there is a lack of methods for automated generation of high-quality decoys for any target proteins. Results: We developed a new algorithm, 3DRobot, to create protein structure decoys by free fragment assembly with enhanced hydrogen-bonding and compactness interactions. The method was benchmarked with three widely used decoy sets from ab initio folding and comparative modeling simulations. The decoys generated by 3DRobot are shown to have significantly enhanced diversity and evenness with a continuous distribution in the RMSD space. The new energy terms introduced in 3DRobot improve the hydrogen-bonding network and compactness of decoys, which eliminates the possibility of native structure recognition by trivial potentials. Algorithms that can automatically create such diverse and well-packed non-native conformations from any protein structure should have a broad impact on the development of advanced protein force field and folding simulation methods. Availiablity and implementation: http://zhanglab.ccmb.med.umich.edu/3DRobot/ Contact: jiay@phy.ccnu.edu.cn ; zhng@umich.edu Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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  • 8
    Publication Date: 2016-07-08
    Description: Rationale: Intimal calcification is highly correlated with atherosclerotic plaque burden, but the underlying mechanism is poorly understood. We recently reported that cartilage oligomeric matrix protein (COMP), a component of vascular extracellular matrix, is an endogenous inhibitor of vascular smooth muscle cell calcification. Objective: To investigate whether COMP affects atherosclerotic calcification. Methods and Results: ApoE –/– COMP –/– mice fed with chow diet for 12 months manifested more extensive atherosclerotic calcification in the innominate arteries than did ApoE –/– mice. To investigate which origins of COMP contributed to atherosclerotic calcification, bone marrow transplantation was performed between ApoE –/– and ApoE –/– COMP –/– mice. Enhanced calcification was observed in mice transplanted with ApoE –/– COMP –/– bone marrow compared with mice transplanted with ApoE –/– bone marrow, indicating that bone marrow–derived COMP may play a critical role in atherosclerotic calcification. Furthermore, microarray profiling of wild-type and COMP –/– macrophages revealed that COMP-deficient macrophages exerted atherogenic and osteogenic characters. Integrin β3 protein was attenuated in COMP –/– macrophages, and overexpression of integrin β3 inhibited the shift of macrophage phenotypes by COMP deficiency. Furthermore, adeno-associated virus 2–integrin β3 infection attenuated atherosclerotic calcification in ApoE –/– COMP –/– mice. Mechanistically, COMP bound directly to β-tail domain of integrin β3 via its C-terminus, and blocking of the COMP–integrin β3 association by β-tail domain mimicked the COMP deficiency–induced shift in macrophage phenotypes. Similar to COMP deficiency in mice, transduction of adeno-associated virus 2–β-tail domain enhanced atherosclerotic calcification in ApoE –/– mice. Conclusions: These results reveal that COMP deficiency acted via integrin β3 to drive macrophages toward the atherogenic and osteogenic phenotype and thereby aggravate atherosclerotic calcification.
    Keywords: Basic Science Research, Atherosclerosis
    Print ISSN: 0009-7330
    Electronic ISSN: 1524-4571
    Topics: Medicine
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  • 9
    Publication Date: 2016-05-06
    Description: PTEN activation through K163 acetylation by inhibiting HDAC6 contributes to tumour inhibition Oncogene 35, 2333 (05 May 2016). doi:10.1038/onc.2015.293 Authors: Z Meng, L-F Jia & Y-H Gan
    Print ISSN: 0950-9232
    Topics: Medicine
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  • 10
    Publication Date: 2016-03-25
    Description: MiR-485-3p and miR-485-5p suppress breast cancer cell metastasis by inhibiting PGC-1α expression Cell Death and Disease 7, e2159 (March 2016). doi:10.1038/cddis.2016.27 Authors: C Lou, M Xiao, S Cheng, X Lu, S Jia, Y Ren & Z Li
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
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