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  • 1
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    PANGAEA
    In:  Supplement to: van Dijk, Inge; de Nooijer, Lennart Jan; Reichart, Gert-Jan (2017): Trends in element incorporation in hyaline and porcelaneous foraminifera as a function of pCO2. Biogeosciences, 14(3), 497-510, https://doi.org/10.5194/bg-14-497-2017
    Publication Date: 2024-03-15
    Description: In this study we analyzed the impact of seawater carbonate chemistry on the incorporation of elements in both hyaline and porcelaneous larger benthic foraminifera. We observed a higher incorporation of Zn and Ba when pCO2 increases from 350 to 1200?ppm. Modeling the activity of free ions as a function of pCO2 shows that speciation of some elements (like Zn and Ba) is mainly influenced by the formation of carbonate complexes in seawater. Hence, differences in foraminiferal uptake of these might be related primarily by the speciation of these elements in seawater. We investigated differences in trends in element incorporation between hyaline (perforate) and porcelaneous (imperforate) foraminifera in order to unravel processes involved in element uptake and subsequent foraminiferal calcification. In hyaline foraminifera we observed a correlation of element incorporation of different elements between species, reflected by a general higher incorporation of elements in species with higher Mg content. Between porcelaneous species, inter-element differences are much smaller. Besides these contrasting trends in element incorporation, however, similar trends are observed in element incorporation as a function of seawater carbonate chemistry in both hyaline and porcelaneous species. This suggests similar mechanisms responsible for the transportation of ions to the site of calcification for these groups of foraminifera, although the contribution of these processes might differ across species.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Amphistegina gibbosa; Aragonite saturation state; Archaias angulatus; Asterigerina carinata; Barium, partition coefficient; Barium/Calcium ratio; Barium/Calcium ratio, standard error; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chromista; Coast and continental shelf; EXP; Experiment; Experiment duration; Foraminifera; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gallows_Bay; Heterostegina antillarum; Heterotrophic prokaryotes; Laboratory experiment; Laevipeneroplis bradyi; Magnesium, partition coefficient; Magnesium/Calcium ratio; Magnesium/Calcium ratio, standard error; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Peneroplis pertusus; pH; Planorbulina acervalis; Registration number of species; Salinity; Salinity, standard deviation; Single species; Sodium, partition coefficient; Sodium/Calcium ratio; Sodium/Calcium ratio, standard error; Sorites marginalis; Species; Strontium, partition coefficient; Strontium/Calcium ratio; Strontium/Calcium ratio, standard error; Temperate; Temperature, water; Temperature, water, standard deviation; Type; Uniform resource locator/link to reference; Zinc, partition coefficient; Zinc/Calcium ratio; Zinc/Calcium ratio, standard error
    Type: Dataset
    Format: text/tab-separated-values, 1207 data points
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2024-03-15
    Description: Agglutinated foraminifera create a shell by assembling particles from the sediment and comprise a significant part of the foraminiferal fauna. Despite their high abundance and diversity, their response to environmental perturbations and climate change is relatively poorly studied. Here we present results from a culture experiment with four different species of agglutinating foraminifera incubated in artificial substrate and exposed to different pCO2 conditions, in either dysoxic or oxic settings. We observed species-specific reactions (i.e., reduced or increased chamber formation rates) to dysoxia and/or acidification. While chamber addition and/or survival rates of Miliammina fusca and Trochammina inflata were negatively impacted by either dysoxia or acidification, respectively, Textularia tenuissima and Spiroplectammina biformis had the highest survivorship and chamber addition rates with combined high pCO2 (2000 ppm) and low O2 (0.7 ml/l) conditions. The differential response of these species indicates that not all agglutinating foraminifera are well-adapted to conditions induced by predicted climate change, which may result in a shift in foraminiferal community composition.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chamber number; Chromista; Coast and continental shelf; EXP; Experiment; Foraminifera; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Growth/Morphology; Heterotrophic prokaryotes; Laboratory experiment; Miliammina fusca; Mortality/Survival; Mudpatch; North Pacific; Number of specimens; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen; Oxygen, dissolved; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Percentage; pH; pH, standard deviation; Potentiometric titration; Registration number of species; Salinity; Single species; Species; Species interaction; Spiroplectammina biformis; Survival; Temperate; Temperature, water; Temperature, water, standard deviation; Textularia tenuissima; Treatment; Trochammina inflata; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 586 data points
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2012-10-18
    Description: Despite numerous studies reporting deregulated microRNA (miRNA) and gene expression patterns in clear cell renal cell carcinoma (ccRCC), no direct comparisons have been made to its presumed normal counterpart: the renal proximal tubular epithelial cells (PTECs). The aim of this study was to determine the miRNA expression profiles of 10 ccRCC-derived cell lines and short-term cultures of PTEC and to correlate these with their gene expression and copy-number profiles. Using microarray-based methods, a significantly altered expression level in ccRCC cell lines was observed for 23 miRNAs and 1630 genes. The set of miRNAs with significantly decreased expression levels include all members of the miR-200 family known to be involved in the epithelial to mesenchymal transition process. Expression levels of 13 of the 47 validated target genes for the downregulated miRNAs were increased more than twofold. Our data reinforce the importance of the epithelial to mesenchymal transition process in the development of ccRCC. © 2012 Wiley Periodicals, Inc.
    Print ISSN: 1045-2257
    Electronic ISSN: 1098-2264
    Topics: Biology , Medicine
    Published by Wiley-Blackwell
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  • 4
    Publication Date: 2020-12-14
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 5
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    CUSHMAN FOUNDATION FORAMINIFERAL RES
    In:  EPIC3Journal of Foraminiferal Research, CUSHMAN FOUNDATION FORAMINIFERAL RES, 47(3), pp. 294-303, ISSN: 0096-1191
    Publication Date: 2017-07-12
    Description: Agglutinated foraminifera create a shell by assembling particles from the sediment and comprise a significant part of the foraminiferal fauna. Despite their high abundance and diversity, their response to environmental perturbations and climate change is relatively poorly studied. Here we present results from a culture experiment with four different species of agglutinating foraminifera incubated in artificial substrate and exposed to different pCO2 conditions, in either dysoxic or oxic settings. We observed species-specific reactions (i.e., reduced or increased chamber formation rates) to dysoxia and/or acidification. While chamber addition and/or survival rates of Miliammina fusca and Trochammina inflata were negatively impacted by either dysoxia or acidification, respectively, Textularia tenuissima and Spiroplectammina biformis had the highest survivorship and chamber addition rates with combined high pCO2 (2000 ppm) and low O2 (0.7 ml/l) conditions. The differential response of these species indicates that not all agglutinating foraminifera are well-adapted to conditions induced by predicted climate change, which may result in a shift in foraminiferal community composition.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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