Description: Increasing upwelling intensity and shoaling of the oxygen minimum zone (OMZ) is projected for Eastern Boundary Upwelling Systems (EBUSs) under ocean warming which may have severe consequences for mesopelagic food webs, trophic transfer, and fish production also in the Humboldt Current Upwelling System (HUS). To improve our mechanistic understanding, from February 23, 2017 until April 14, 2017 we performed a 50 days mesocosm experiment in the northern HUS (off Callao Bay, Peru) and monitored the zooplankton development prior to and following a simulated upwelling event through the addition of deeper water of two different OMZ-influenced subsurface waters to four of in total eight mesocosms. To elucidate plankton dynamics and trophic relationships, we followed the temporal development of the mesozooplankton community in relation to that of phytoplankton, analyzed the fatty acid composition and gut fluorescence of dominant copepods, and determined the stable isotope (SI) and elemental composition (C:N) of dominant zooplankton taxa. Zooplankton samples were collected from the mesocosms over the entire experiment duration using an Apstein net (17 cm diameter, 100 µm mesh) to determine abundance and taxonomic composition of the zooplankton community, and to analyze fatty acid composition, gut fluorescence and elemental composition of dominant zooplankton. Furthermore, abundance and biomass of zooplankton groups was estimated from scanned ZooScan images.

Description: Biomass of zooplankton taxa in µg DM per liter as determined by ZooScan, using published area to dry weight relationships (Lehette & Hernandez-Leon 2009). Each data point is one sampling day (date) in one mesocosm (MK). For details on experimental treatments and sampling, refer to Bach et al. 2021 (https://doi.org/10.5194/bg-17-4831-2020) and Ayon et al. 2022 (https://doi.org/10.5194/bg-2022-157). Raw images are stored in https://ecotaxa.obs-vlfr.fr/prj/3784. All taxonomic categories are self-expanatory.

Description: Zooplankton species/groups abundance table per mesocosm and sampling day. Abundances are given as individual per m-3 and individuals per liter.

Description: Fatty acid composition data for the two dominant copepods in the mesocosms (Paracalanus sp. and Hemicyclops sp.).

Description: Gut fluorescence and C/N ratio of Paracalanus sp. determined during two occassions during the mesocosm experiment (Sampling Day 21/22 and 34/35).

Description: This dataset shows abundance of zooplankton taxa in individuals per liter as determined by ZooScan. Each data point is one sampling day (date) in one mesocosm (MK). For details on experimental treatments and sampling, refer to Bach et al. 2021 (https://doi.org/10.5194/bg-17-4831-2020) and Ayon et al. 2022 (https://doi.org/10.5194/bg-2022-157). Raw images are stored in https://ecotaxa.obs-vlfr.fr/prj/3784. All taxonomic categories are self-explanatory.

Description: The Humboldt Current Upwelling System (HCS) is the most productive eastern boundary upwelling system (EBUS) in terms of fishery yield on the planet. EBUSs are considered hotspots of climate change with predicted expansion of mesopelagic oxygen minimum zones (OMZs) and related changes in the frequency and intensity of upwelling of nutrient-rich, low-oxygen deep water. To increase our mechanistic understanding of how upwelling impacts plankton communities and trophic links, we investigated mesozooplankton community succession and gut fluorescence, fatty acid and elemental compositions (C, N, O, P), and stable isotope (δ13C, δ15N) ratios of dominant mesozooplankton and microzooplankton representatives in a mesocosm setup off Callao (Peru) after simulated upwelling with OMZ water from two different locations and different N:P signatures (moderate and extreme treatments). An oxycline between 5 and 15 m with hypoxic conditions (〈50 µmol L−1) below ∼10 m persisted in the mesocosms throughout the experiment. No treatment effects were determined for the measured parameters, but differences in nutrient concentrations established through OMZ water additions were only minor. Copepods and polychaete larvae dominated in terms of abundance and biomass. Development and reproduction of the dominant copepod genera Paracalanus sp., Hemicyclops sp., Acartia sp., and Oncaea sp. were hindered as evident from accumulation of adult copepodids but largely missing nauplii. Failed hatching of nauplii in the hypoxic bottom layer of the mesocosms and poor nutritional condition of copepods suggested from very low gut fluorescence and fatty acid compositions most likely explain the retarded copepod development. Correlation analysis revealed no particular trophic relations between dominant copepods and phytoplankton groups. Possibly, particulate organic matter with a relatively high C:N ratio was a major diet of copepods. C:N ratios of copepods and polychaetes ranged 4.8–5.8 and 4.2–4.3, respectively. δ15N was comparatively high (∼13 ‰–17 ‰), potentially because the injected OMZ source water was enriched in δ15N as a result of anoxic conditions. Elemental ratios of dinoflagellates deviated strongly from the Redfield ratio. We conclude that opportunistic feeding of copepods may have played an important role in the pelagic food web. Overall, projected changes in the frequency and intensity of upwelling hypoxic waters may make a huge difference for copepod reproduction and may be further enhanced by varying N:P ratios of upwelled OMZ water masses.