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  • 1
    Publication Date: 2021-06-29
    Description: The FLUXNET2015 dataset provides ecosystem-scale data on CO2, water, and energy exchange between the biosphere and the atmosphere, and other meteorological and biological measurements, from 212 sites around the globe (over 1500 site-years, up to and including year 2014). These sites, independently managed and operated, voluntarily contributed their data to create global datasets. Data were quality controlled and processed using uniform methods, to improve consistency and intercomparability across sites. The dataset is already being used in a number of applications, including ecophysiology studies, remote sensing studies, and development of ecosystem and Earth system models. FLUXNET2015 includes derived-data products, such as gap-filled time series, ecosystem respiration and photosynthetic uptake estimates, estimation of uncertainties, and metadata about the measurements, presented for the first time in this paper. In addition, 206 of these sites are for the first time distributed under a Creative Commons (CC-BY 4.0) license. This paper details this enhanced dataset and the processing methods, now made available as open-source codes, making the dataset more accessible, transparent, and reproducible.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Atmospheric Measurement Techniques 7 (2014): 2787-2805, doi:10.5194/amt-7-2787-2014.
    Description: Our understanding of biosphere–atmosphere exchange has been considerably enhanced by eddy covariance measurements. However, there remain many trace gases, such as molecular hydrogen (H2), that lack suitable analytical methods to measure their fluxes by eddy covariance. In such cases, flux-gradient methods can be used to calculate ecosystem-scale fluxes from vertical concentration gradients. The budget of atmospheric H2 is poorly constrained by the limited available observations, and thus the ability to quantify and characterize the sources and sinks of H2 by flux-gradient methods in various ecosystems is important. We developed an approach to make nonintrusive, automated measurements of ecosystem-scale H2 fluxes both above and below the forest canopy at the Harvard Forest in Petersham, Massachusetts, for over a year. We used three flux-gradient methods to calculate the fluxes: two similarity methods that do not rely on a micrometeorological determination of the eddy diffusivity, K, based on (1) trace gases or (2) sensible heat, and one flux-gradient method that (3) parameterizes K. We quantitatively assessed the flux-gradient methods using CO2 and H2O by comparison to their simultaneous independent flux measurements via eddy covariance and soil chambers. All three flux-gradient methods performed well in certain locations, seasons, and times of day, and the best methods were trace gas similarity for above the canopy and K parameterization below it. Sensible heat similarity required several independent measurements, and the results were more variable, in part because those data were only available in the winter, when heat fluxes and temperature gradients were small and difficult to measure. Biases were often observed between flux-gradient methods and the independent flux measurements, and there was at least a 26% difference in nocturnal eddy-derived net ecosystem exchange (NEE) and chamber measurements. H2 fluxes calculated in a summer period agreed within their uncertainty and pointed to soil uptake as the main driver of H2 exchange at Harvard Forest, with H2 deposition velocities ranging from 0.04 to 0.10 cm s−1.
    Description: L. K. Meredith was supported through the following funding sources: NSF Graduate Research Fellowship, multiple grants from NASA to MIT for the Advanced Global Atmospheric Gases Experiment (AGAGE), MIT Center for Global Change Science, MIT Joint Program on the Science and Policy of Global Change, MIT Martin Family Society of Fellows for Sustainability, MIT Ally of Nature Research Fund, MIT William Otis Crosby Lectureship, and MIT Warren Klein Fund. Operation of the EMS flux tower was supported by the Office of Science (BER), US Dept. of Energy (DE-SC0004985), and is a component of the Harvard Forest LTER, supported by National Science Foundation.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2016. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Global Change Biology 23 (2017): 2874-2886, doi: 10.1111/gcb.13590.
    Description: Accurate estimation of terrestrial gross primary productivity (GPP) remains a challenge despite its importance in the global carbon cycle. Chlorophyll fluorescence (ChlF) has been recently adopted to understand photosynthesis and its response to the environment, particularly with remote sensing data. However, it remains unclear how ChlF and photosynthesis are linked at different spatial scales across the growing season. We examined seasonal relationships between ChlF and photosynthesis at the leaf, canopy, and ecosystem scales, and explored how leaf-level ChlF was linked with canopy-scale solar induced chlorophyll fluorescence (SIF) in a temperate deciduous forest at Harvard Forest, Massachusetts, USA. Our results show that ChlF captured the seasonal variations of photosynthesis with significant linear relationships between ChlF and photosynthesis across the growing season over different spatial scales (R2=0.73, 0.77 and 0.86 at leaf, canopy and satellite scales, respectively; p〈0.0001). We developed a model to estimate GPP from the tower-based measurement of SIF and leaf-level ChlF parameters. The estimation of GPP from this model agreed well with flux tower observations of GPP (R2=0.68; p〈0.0001), demonstrating the potential of SIF for modeling GPP. At the leaf scale, we found that leaf Fq’/Fm’, the fraction of absorbed photons that are used for photochemistry for a light adapted measurement from a pulse amplitude modulation fluorometer, was the best leaf fluorescence parameter to correlate with canopy-SIF yield (SIF/APAR, R2=0.79; p〈0.0001). We also found that canopy-SIF and SIF-derived GPP (GPPSIF) were strongly correlated to leaf-level biochemistry and canopy structure, including chlorophyll content (R2=0.65 for canopy-GPPSIF and chlorophyll content; p〈0.0001), leaf area index (LAI) (R2=0.35 for canopy-GPPSIF and LAI; p〈0.0001), and normalized difference vegetation index (NDVI) (R2=0.36 for canopy-GPPSIF and NDVI; p〈0.0001). Our results suggest that ChlF can be a powerful tool to track photosynthetic rates at leaf, canopy, and ecosystem scales.
    Description: This research was supported by U.S. Department of Energy Office of Biological and Environmental Research Grant DE-SC0006951, National Science Foundation Grants DBI-959333 and AGS-1005663, and the University of Chicago and the MBL Lillie Research Innovation Award to J. Tang, National Science Foundation of China Grants (41671421) to Y. Zhang, and China Scholarship Council (CSC) to H. Yang.
    Description: 2017-12-14
    Keywords: Solar induced fluorescence ; Photosynthesis ; Gross primary production ; Chlorophyll ; Vegetation indices ; Carbon cycle
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 4
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chu, H., Luo, X., Ouyang, Z., Chan, W. S., Dengel, S., Biraud, S. C., Torn, M. S., Metzger, S., Kumar, J., Arain, M. A., Arkebauer, T. J., Baldocchi, D., Bernacchi, C., Billesbach, D., Black, T. A., Blanken, P. D., Bohrer, G., Bracho, R., Brown, S., Brunsell, N. A., Chen, J., Chen, X., Clark, K., Desai, A. R., Duman, T., Durden, D., Fares, S., Forbrich, I., Gamon, J. A., Gough, C. M., Griffis, T., Helbig, M., Hollinger, D., Humphreys, E., Ikawa, H., Iwata, H., Ju, Y., Knowles, J. F., Knox, S. H., Kobayashi, H., Kolb, T., Law, B., Lee, X., Litvak, M., Liu, H., Munger, J. W., Noormets, A., Novick, K., Oberbauer, S. F., Oechel, W., Oikawa, P., Papuga, S. A., Pendall, E., Prajapati, P., Prueger, J., Quinton, W. L., Richardson, A. D., Russell, E. S., Scott, R. L., Starr, G., Staebler, R., Stoy, P. C., Stuart-Haentjens, E., Sonnentag, O., Sullivan, R. C., Suyker, A., Ueyama, M., Vargas, R., Wood, J. D., & Zona, D. Representativeness of eddy-covariance flux footprints for areas surrounding AmeriFlux sites. Agricultural and Forest Meteorology, 301, (2021): 108350, https://doi.org/10.1016/j.agrformet.2021.108350.
    Description: Large datasets of greenhouse gas and energy surface-atmosphere fluxes measured with the eddy-covariance technique (e.g., FLUXNET2015, AmeriFlux BASE) are widely used to benchmark models and remote-sensing products. This study addresses one of the major challenges facing model-data integration: To what spatial extent do flux measurements taken at individual eddy-covariance sites reflect model- or satellite-based grid cells? We evaluate flux footprints—the temporally dynamic source areas that contribute to measured fluxes—and the representativeness of these footprints for target areas (e.g., within 250–3000 m radii around flux towers) that are often used in flux-data synthesis and modeling studies. We examine the land-cover composition and vegetation characteristics, represented here by the Enhanced Vegetation Index (EVI), in the flux footprints and target areas across 214 AmeriFlux sites, and evaluate potential biases as a consequence of the footprint-to-target-area mismatch. Monthly 80% footprint climatologies vary across sites and through time ranging four orders of magnitude from 103 to 107 m2 due to the measurement heights, underlying vegetation- and ground-surface characteristics, wind directions, and turbulent state of the atmosphere. Few eddy-covariance sites are located in a truly homogeneous landscape. Thus, the common model-data integration approaches that use a fixed-extent target area across sites introduce biases on the order of 4%–20% for EVI and 6%–20% for the dominant land cover percentage. These biases are site-specific functions of measurement heights, target area extents, and land-surface characteristics. We advocate that flux datasets need to be used with footprint awareness, especially in research and applications that benchmark against models and data products with explicit spatial information. We propose a simple representativeness index based on our evaluations that can be used as a guide to identify site-periods suitable for specific applications and to provide general guidance for data use.
    Description: We thank the AmeriFlux site teams for sharing their data and metadata with the network. Funding for these flux sites is acknowledged in the site data DOI, shown in Table S1. This analysis was supported in part by funding provided to the AmeriFlux Management Project by the U.S. Department of Energy's Office of Science under Contract No. DE-AC02-05CH11231. All footprint climatologies, site-level representativeness indices, and monthly EVI and sensor location biases can be accessed via the Zenodo Data Repository (Datasets S1–S6, http://doi.org/10.5281/zenodo.4015350).
    Keywords: Flux footprint ; Spatial representativeness ; Landsat EVI ; Land cover ; Sensor location bias ; Model-data benchmarking
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Environmental science & technology 19 (1985), S. 730-736 
    ISSN: 1520-5851
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Environmental science & technology 23 (1989), S. 556-561 
    ISSN: 1520-5851
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Energy, Environment Protection, Nuclear Power Engineering
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1365-2486
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Notes: The turbulent exchanges of CO2 and water vapour between an aggrading deciduous forest in the north-eastern United States (Harvard Forest) and the atmosphere were measured from 1990 to 1994 using the eddy covariance technique. We present a detailed description of the methods used and a rigorous evaluation of the precision and accuracy of these measurements. We partition the sources of error into three categories: (1) uniform systematic errors are constant and independent of measurement conditions (2) selective systematic errors result when the accuracy of the exchange measurement varies as a function of the physical environment, and (3) sampling uncertainty results when summing an incomplete data set to calculate long-term exchange.Analysis of the surface energy budget indicates a uniform systematic error in the turbulent exchange measurements of -20 to 0%. A comparison of nocturnal eddy flux with chamber measurements indicates a selective systematic underestimation during calm (friction velocity 〈 0.17 m s−1) nocturnal periods. We describe an approach to correct for this error. The integrated carbon sequestration in 1994 was 2.1 t C ha−1 y−1 with a 90% confidence interval due to sampling uncertainty of ±0.3 t C ha−1 y−1 determined by Monte Carlo simulation. Sampling uncertainty may be reduced by estimating the flux as a function of the physical environment during periods when direct observations are unavailable, and by minimizing the length of intervals without flux data. These analyses lead us to place an overall uncertainty on the annual carbon sequestration in 1994 of -0.3 to +0.8 t C ha−1 y−1.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 422 (2003), S. 134-134 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Nitrogen oxides are trace gases that critically affect atmospheric chemistry and aerosol formation. Vegetation is usually regarded as a sink for these gases, although nitric oxide and nitrogen dioxide have been detected as natural emissions from plants. Here we use in situ measurements to show ...
    Type of Medium: Electronic Resource
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  • 9
    Publication Date: 2015-01-01
    Description: The proliferation of digital cameras co-located with eddy covariance instrumentation provides new opportunities to better understand the relationship between canopy phenology and the seasonality of canopy photosynthesis. In this paper we analyze the abilities and limitations of canopy color metrics measured by digital repeat photography to track seasonal canopy development and photosynthesis, determine phenological transition dates, and estimate intra-annual and interannual variability in canopy photosynthesis. We used 59 site-years of camera imagery and net ecosystem exchange measurements from 17 towers spanning three plant functional types (deciduous broadleaf forest, evergreen needleleaf forest, and grassland/crops) to derive color indices and estimate gross primary productivity (GPP). GPP was strongly correlated with greenness derived from camera imagery in all three plant functional types. Specifically, the beginning of the photosynthetic period in deciduous broadleaf forest and grassland/crops and the end of the photosynthetic period in grassland/crops were both correlated with changes in greenness; changes in redness were correlated with the end of the photosynthetic period in deciduous broadleaf forest. However, it was not possible to accurately identify the beginning or ending of the photosynthetic period using camera greenness in evergreen needleleaf forest. At deciduous broadleaf sites, anomalies in integrated greenness and total GPP were significantly correlated up to 60 days after the mean onset date for the start of spring. More generally, results from this work demonstrate that digital repeat photography can be used to quantify both the duration of the photosynthetically active period as well as total GPP in deciduous broadleaf forest and grassland/crops, but that new and different approaches are required before comparable results can be achieved in evergreen needleleaf forest. # doi:10.1890/14-0005.1
    Print ISSN: 1051-0761
    Electronic ISSN: 1939-5582
    Topics: Biology
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