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  • 1
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    PANGAEA
    In:  Supplement to: Zaiko, Anastasija; Samuiloviene, Aurelija; Ardura, Alba; Garcia-Vazquez, Eva (2015): Metabarcoding approach for nonindigenous species surveillance in marine coastal waters. Marine Pollution Bulletin, 100(1), 53-59, https://doi.org/10.1016/j.marpolbul.2015.09.030
    Publication Date: 2023-03-18
    Description: In this study, high-throughput sequencing (HTS) metabarcoding was applied for the surveillance of plankton communities within the southeastern (SE) Baltic Sea coastal zone. These results were compared with those from routine monitoring survey and morphological analyses. Four of five nonindigenous species found in the samples were identified exclusively by metabarcoding. All of them are considered as invasive in the Baltic Sea with reported impact on the ecosystem and biodiversity. This study indicates that, despite some current limitations, HTS metabarcoding can provide information on the presence of exotic species and advantageously complement conventional approaches, only requiring the same monitoring effort as before. Even in the currently immature status of HTS, this combination of HTS metabarcoding and observational records is recommended in the early detection of marine pests and delivery of the environmental status metrics of nonindigenous species.
    Keywords: Baltic Sea; File name; File size; Klaipedia; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 9 data points
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  • 2
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    PERGAMON-ELSEVIER SCIENCE LTD
    In:  EPIC3Marine Pollution Bulletin, PERGAMON-ELSEVIER SCIENCE LTD, 163, ISSN: 0025-326X
    Publication Date: 2021-08-31
    Description: In marine settings, anthropogenic disturbances and climate change increase the rate of biological invasions. Predicting still undescribed invasive alien species (IAS) is needed for preparing timely management responses. We tested a strategy for discovering new potential IAS using DNA in a trans-equatorial expedition onboard RV Polarstern. During one-month travel, species inside ballast water experienced oxygen depletion, warming, darkness and ammonium stress. Many organisms died but several phytoplankton and zooplankton survivors resisted and were detected through a robust combination of individual sampling, DNA barcoding and metabarcoding, new in ballast water studies. Ammonium was identified as an important influential factor to explain diversity changes in phytoplankton and zooplankton. Some species reproduced until the end of the travel. These species tolerant to travel stress could be targeted as potential IAS and prioritized for designing control measures. Introducing resistance to travel stress in biosecurity risk analysis would be recommended.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 3
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    Regional Euro-Asian Biological Invasions Centre Oy (REABIC)
    In:  EPIC3Management of Biological Invasions, Regional Euro-Asian Biological Invasions Centre Oy (REABIC), 14(3), pp. 379-402, ISSN: 1989-8649
    Publication Date: 2024-04-17
    Description: Signatories to the Antarctic Treaty System’s Environmental Protocol are committed to preventing incursions of non-native species into Antarctica, but systematic surveillance is rare. Environmental DNA (eDNA) methods provide new opportunities for enhancing detection of non-native species and biosecurity monitoring. To be effective for Antarctic biosecurity, eDNA tests must have appropriate sensitivity and specificity to distinguish non-native from native Antarctic species, and be fit-for-purpose. This requires knowledge of the priority risk species or taxonomic groups for which eDNA surveillance will be informative, validated eDNA assays for those species or groups, and reference DNA sequences for both target non-native and related native Antarctic species. Here, we used an expert elicitation process and decision-by-consensus approach to identify and assess priority biosecurity risks for the Australian Antarctic Program (AAP) in East Antarctica, including identifying high priority non-native species and their potential transport pathways. We determined that the priority targets for biosecurity monitoring were not individual species, but rather broader taxonomic groups such as mussels (Mytilus species), tunicates (Ascidiacea), springtails (Collembola), and grasses (Poaceae). These groups each include multiple species with high risks of introduction to and/or establishment in Antarctica. The most appropriate eDNA methods for the AAP must be capable of detecting a range of species within these high-risk groups (e.g., eDNA metabarcoding). We conclude that the most beneficial Antarctic eDNA biosecurity applications include surveillance of marine species in nearshore environments, terrestrial invertebrates, and biofouling species on vessels visiting Antarctica. An urgent need exists to identify suitable genetic markers for detecting priority species groups, establish baseline terrestrial and marine biodiversity for Antarctic stations, and develop eDNA sampling methods for detecting biofouling organisms.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
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  • 4
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    Elsevier
    In:  Journal of Environmental Management, 181 . pp. 8-15.
    Publication Date: 2019-02-01
    Description: Highlights: • Authors use inconsistent definitions of key terms like driver and pressure. • An imprecise wording could induce misunderstanding between science and policy. • We provide definitions of key terms compatible with the DPSIR approach. Abstract: In the marine sciences an increasing number of studies on environmental changes, their causes, and environmental assessments emerged in recent years. Often authors use non-uniform and inconsistent definitions of key terms like driver, threats, pressures etc. Although all of these studies clearly define causal dependencies between the interacting socio-economic and environmental systems in an understandable way, still an overall imprecise wording could induce misunderstanding at higher policy levels when it comes to integrated ecosystems assessments. Therefore we recommend using unified definitions for a better communication between science and management within national, regional and international environmental policies, for example the European Marine Strategy Framework Directive (MSFD). With this article we provide definitions compatible with the driver-pressure-state-impact-response (DPSIR) approach. Although most examples are MSFD related and thus have a marine focus the definitions are intended to be equally applicable for other systems and are usable world-wide. We suggest sticking to these definitions for an easy and simplified knowledge transfer from science to management, since DPSIR model is already accepted as a helpful tool for structuring and communicating ecosystem analyses.
    Type: Article , PeerReviewed
    Format: text
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  • 5
    Publication Date: 2015-01-27
    Description: Highlights: • We test the effect of an invasive alien species on ecological quality assessment. • We calculate Benthic Quality Index for the coastal lagoon affected by zebra mussel. • Zebra mussel may modify benthic habitats enhancing local biodiversity. • This might bias BQI by showing false improvement of ecological status. • We suggest a framework how the bias in could be minimized. Abstract: Benthic component of an ecosystem is considered in ecological status assessment of the key European Directives. Most of the metrics proposed for the benthic quality assessment are biodiversity based. Their robustness and applicability are widely discussed in many recent studies. However an impact of invasive alien species on biotic indices and environmental quality assessments has been largely overlooked by researchers so far. In the current study we assessed Benthic Quality Index (BQI) in a coastal ecosystem, highly affected by the invasive zebra mussel Dreissena polymorpha. Zebra mussel is able of modifying benthic habitats and enhancing local biodiversity. In the analyzed ecosystem it affected benthic species richness, abundance and community structure. As a result the calculated BQI values were significantly higher in the presence of zebra mussel with evident outliers in samples with particularly high zebra mussel abundances. Therefore we found that BQI determined in our study was artificially elevated providing false signal of the ecological status improvement. Based on the results presented, we suggested data correction framework that has been tested on the current dataset and proved to be effective minimizing zebra mussel impact on BQI assessment. Our experience could be applied for other coastal ecosystems invaded by the zebra mussel or any other aquatic invasive species with resembling biological traits and bioinvasion impacts.
    Type: Article , PeerReviewed
    Format: text
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  • 6
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    In:  [Poster] In: Marine science and technology 2014, 23.-25.04.2014, Klaipeda, Lithuania .
    Publication Date: 2014-10-08
    Type: Conference or Workshop Item , NonPeerReviewed
    Format: text
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  • 7
    Publication Date: 2015-12-02
    Description: Intense human activities facilitate the successful spread and establishment of non-indigenous aquatic organisms in marine and freshwater ecosystems. In some cases such intrusions result in noticeable and adverse changes in the recipient environments. In the Baltic Sea, the discovery and rapid initial spread of the North American wedge clam Rangia cuneata represents a new wave of invasion which may trigger unpredictable changes of the local benthic communities. In this study we present a species-specific DNA-based marker developed in silico and experimentally tested on environmental samples. Marker specificity and sensitivity were assessed in vitro from water samples containing different mixtures of the target species and other five bivalves currently present in the region: the native Cerastoderma glaucum, Macoma balthica and Mytilus trossulus, the invasive Dreissena polymorpha and the cryptogenic Mya arenaria. Cross-species amplification was not found in any case. The method allows to detecting at least 0.4 ng of Rangia cuneata DNA per μl, and 0.1 g of tissue per liter of water. Finally, the marker performance was assessed in water samples from the Baltic Sea and Vistula Lagoon. The coincidence between independent visual observations of Rangia cuneata and positive PCR amplification of the marker from the water samples confirmed the efficiency of this highly reproducible, fast, and technically easy method. Rangia cuneata traces can be detected from environmental DNA even when the population is sparse and small, enabling rapid management responses and allowing to track the invasion dynamics.
    Type: Article , PeerReviewed
    Format: text
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  • 8
    Publication Date: 2015-12-22
    Description: Highlights: • Metabarcoding was applied for the surveillance of plankton communities and NIS detection. • The results were compared to those from the conventional monitoring. • Four of five detected NIS were identified exclusively by metabarcoding. • Most of the detected NIS were benthic organisms with planktonic larval stage. • The reported taxonomic composition was consistent between two methods at a family level. Abstract: In this study, high-throughput sequencing (HTS) metabarcoding was applied for the surveillance of plankton communities within the southeastern (SE) Baltic Sea coastal zone. These results were compared with those from routine monitoring survey and morphological analyses. Four of five nonindigenous species found in the samples were identified exclusively by metabarcoding. All of them are considered as invasive in the Baltic Sea with reported impact on the ecosystem and biodiversity. This study indicates that, despite some current limitations, HTS metabarcoding can provide information on the presence of exotic species and advantageously complement conventional approaches, only requiring the same monitoring effort as before. Even in the currently immature status of HTS, this combination of HTS metabarcoding and observational records is recommended in the early detection of marine pests and delivery of the environmental status metrics of nonindigenous species.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 9
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    In:  [Talk] In: New Zealand Marine Science Society Conference, 12.-15.04.2014, Nelson, New Zealand .
    Publication Date: 2014-10-08
    Type: Conference or Workshop Item , NonPeerReviewed
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  • 10
    Publication Date: 2015-01-27
    Type: Conference or Workshop Item , NonPeerReviewed
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