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  • Benthic foraminifera  (4)
  • Ciliate  (2)
  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2006. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography, 21 (2006): PA4210, doi:10.1029/2006PA001290.
    Description: The conventional method to distinguish live from dead benthic foraminifers uses Rose Bengal, a stain that reacts with both live and dead cytoplasm. CellTracker Green CMFDA is a fluorogenic probe causing live cells to fluoresce after proper incubation. To determine the more accurate viability method, we conducted a direct comparison of Rose Bengal staining with CellTracker Green labeling. Eight multicore tops were analyzed from Florida Margin (SE United States; 248-751 m water depths), near Great Bahama Bank (259-766 m), and off the Carolinas (SE United States; 220 m, 920 m). On average, less than half the Rose Bengal-stained foraminifera were actually living when collected. Thus, while Rose Bengal can significantly overestimate abundance, combined analyses of CellTracker Green and Rose Bengal can provide insights on population dynamics and effects of episodic events. Initial stable isotope analyses indicate that the CellTracker Green method does not significantly affect these important paleoceanographic proxies.
    Description: Funding for this research was provided by the National Science Foundation Research Experience for Undergraduates Program (grant #OCE-0139423; PI, D. McCorkle, WHOI) and NSF grants OCE-9911654 and OCE-0351029.
    Keywords: Benthic foraminifera ; Viability assay ; Stable isotopes ; Epifluorescence microscopy
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 2
    Publication Date: 2022-05-26
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 3 (2012): 341, doi:10.3389/fmicb.2012.00341.
    Description: Symbioses between Bacteria, Archaea, and Eukarya in deep-sea marine environments represent a means for eukaryotes to exploit otherwise inhospitable habitats. Such symbioses are abundant in many low-oxygen benthic marine environments, where the majority of microbial eukaryotes contain prokaryotic symbionts. Here, we present evidence suggesting that in certain oxygen-depleted marine water-column habitats, the majority of microbial eukaryotes are also associated with prokaryotic cells. Ciliates (protists) associated with bacteria were found to be the dominant eukaryotic morphotype in the haloclines of two different deep-sea hypersaline anoxic basins (DHABs) in the Eastern Mediterranean Sea. These findings are compared to associations between ciliates and bacteria documented from the permanently anoxic waters of the Cariaco Basin (Caribbean Sea). The dominance of ciliates exhibiting epibiotic bacteria across three different oxygen-depleted marine water column habitats suggests that such partnerships confer a fitness advantage for ciliates in these environments.
    Description: This work was funded by NSF grant OCE-0849578 and to Virginia P. Edgcomb and Joan M. Bernhard, and OCE-1061774 to Virginia P. Edgcomb and Craig Taylor (WHOI).
    Keywords: Ciliate ; SEM ; rRNA ; Anoxic ; OMZ ; Hypersaline ; Symbiosis ; CARD-FISH
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-05-26
    Description: © The Author(s), 2011. This is an open-access article subject to an exclusive license agreement between the authors and Frontiers Media SA, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited. The definitive version was published in Frontiers in Microbiology 2 (2011): 55, doi:10.3389/fmicb.2011.00055.
    Description: Marine micro-oxic to sulfidic environments are sites of intensive biogeochemical cycling and elemental sequestration, where prokaryotes are major driving forces mediating carbon, nitrogen, sulfur, phosphorus, and metal cycles, important from both biogeochemical and evolutionary perspectives. Associations between single-celled eukaryotes and bacteria and/or archaea are common in such habitats. Here we describe a ciliate common in the micro-oxic to anoxic, typically sulfidic, sediments of Santa Barbara Basin (CA, USA). The ciliate is 95% similar to Parduzcia orbis (18S rRNA). Transmission electron micrographs reveal clusters of at least three different endobiont types organized within membrane-bound sub-cellular regions. Catalyzed reporter deposition–fluorescent in situ hybridization and 16S rRNA clone libraries confirm the symbionts include up to two sulfate reducers (Desulfobulbaceae, Desulfobacteraceae), a methanogen (Methanobacteriales), and possibly a Bacteroidete (Cytophaga) and a Type I methanotroph, suggesting synergistic metabolisms in this environment. This case study is discussed in terms of implications to biogeochemistry, and benthic ecology.
    Description: This research was supported by grants from NSF (MCB-0604084 to Virginia P. Edgcomb and Joan M. Bernhard and MCB-0702491 to Joan M. Bernhard, Virginia P. Edgcomb, and K. L. Casciotti).
    Keywords: Ciliate ; Anoxia ; Symbiosis ; TEM ; SSU rRNA ; FISH
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bernhard, J. M., Wit, J. C., Starczak, V. R., Beaudoin, D. J., Phalen, W. G., & McCorkle, D. C. Impacts of multiple stressors on a benthic foraminiferal community: a long-term experiment assessing response to ocean acidification, hypoxia and warming. Frontiers in Marine Science, 8, (2021): 643339, https://doi.org/10.3389/fmars.2021.643339.
    Description: Ocean chemistry is changing as a result of human activities. Atmospheric carbon dioxide (CO2) concentrations are increasing, causing an increase in oceanic pCO2 that drives a decrease in oceanic pH, a process called ocean acidification (OA). Higher CO2 concentrations are also linked to rising global temperatures that can result in more stratified surface waters, reducing the exchange between surface and deep waters; this stronger stratification, along with nutrient pollution, contributes to an expansion of oxygen-depleted zones (so called hypoxia or deoxygenation). Determining the response of marine organisms to environmental changes is important for assessments of future ecosystem functioning. While many studies have assessed the impact of individual or paired stressors, fewer studies have assessed the combined impact of pCO2, O2, and temperature. A long-term experiment (∼10 months) with different treatments of these three stressors was conducted to determine their sole or combined impact on the abundance and survival of a benthic foraminiferal community collected from a continental-shelf site. Foraminifera are well suited to such study because of their small size, relatively rapid growth, varied mineralogies and physiologies. Inoculation materials were collected from a ∼77-m deep site south of Woods Hole, MA. Very fine sediments (〈53 μm) were used as inoculum, to allow the entire community to respond. Thirty-eight morphologically identified taxa grew during the experiment. Multivariate statistical analysis indicates that hypoxia was the major driving factor distinguishing the yields, while warming was secondary. Species responses were not consistent, with different species being most abundant in different treatments. Some taxa grew in all of the triple-stressor samples. Results from the experiment suggest that foraminiferal species’ responses will vary considerably, with some being negatively impacted by predicted environmental changes, while other taxa will tolerate, and perhaps even benefit, from deoxygenation, warming and OA.
    Description: This work was supported by the US NSF SEES-OA grant OCE-1219948 to JB and the Investment in Science Program at WHOI. DM also received support from the NSF Independent Research and Development Program.
    Keywords: Deoxygenation ; Ocean acidification ; Benthic communities ; Benthic foraminifera ; Climate change ; Propagule bank ; Global warming
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Brinkmann, I., Ni, S., Schweizer, M., Oldham, V. E., Quintana Krupinski, N. B., Medjoubi, K., Somogyi, A., Whitehouse, M. J., Hansel, C. M., Barras, C., Bernhard, J. M., & Filipsson, H. L. Foraminiferal Mn/Ca as bottom-water hypoxia proxy: an assessment of Nonionella stella in the Santa Barbara Basin, USA. Paleoceanography and Paleoclimatology, 36(11), (2021): e2020PA004167, https://doi.org/10.1029/2020PA004167.
    Description: Hypoxia is of increasing concern in marine areas, calling for a better understanding of mechanisms leading to decreasing dissolved oxygen concentrations ([O2]). Much can be learned about the processes and implications of deoxygenation for marine ecosystems using proxy records from low-oxygen sites, provided proxies, such as the manganese (Mn) to calcium (Ca) ratio in benthic foraminiferal calcite, are available and well calibrated. Here we report a modern geochemical data set from three hypoxic sites within the Santa Barbara Basin (SBB), USA, where we study the response of Mn/Caforam in the benthic foraminifer Nonionella stella to variations in sedimentary redox conditions (Mn, Fe) and bottom-water dissolved [O2]. We combine molecular species identification by small subunit rDNA sequencing with morphological characterization and assign the SBB N. stella used here to a new phylotype (T6). Synchrotron-based scanning X-ray fluorescence (XRF) imaging and Secondary Ion Mass Spectrometry (SIMS) show low Mn incorporation (partition coefficient DMn 〈 0.05) and limited proxy sensitivity of N. stella, at least within the range of dissolved [O2] (2.7–9.6 μmol/l) and Mnpore-water gradients (2.12–21.59 μmol/l). Notably, even though intra- and interspecimen Mn/Ca variability (33% and 58%, respectively) was only partially controlled by the environment, Mn/Caforam significantly correlated with both pore-water Mn and bottom-water [O2]. However, the prevalent suboxic bottom-water conditions and limited dissolved [O2] range complicate the interpretation of trace-elemental trends. Additional work involving other oxygenation proxies and samples from a wider oxygen gradient should be pursued to further develop foraminiferal Mn/Ca as an indicator for hypoxic conditions.
    Description: We acknowledge funding from the Swedish Research Council VR (grant numbers 2017-04190 and 2017-00671), the Crafoord Foundation, and the Royal Physiographic Society in Lund, Sweden. Shiptime provided by US NSF IOS 1557430. We acknowledge SOLEIL for provision of synchrotron radiation facilities and the beamline NANOSCOPIUM (proposal number 20181115). The synchrotron-based experiments were supported by CALIPSOplus under the EU Framework Programme for Research and Innovation HORIZON 2020 (grant agreement 730872). The SIMS analyses were jointly supported by the Swedish Museum of Natural History and Swedish Research Council. This is NordSIMS contribution No. 694. J. M. Bernhard and C. M. Hansel also acknowledge funding from the US National Science Foundation (IOS 1557430).
    Keywords: Benthic foraminifera ; Deoxygenation ; Micro-analytical techniques ; Mn/Ca ; Proxy calibration
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
    Publication Date: 2022-10-21
    Description: Dissociation of methane hydrates due to ocean warming releases methane, a powerful greenhouse gas, to the atmosphere. Dissociation of gas hydrates may have led to rapid and dramatic environmental changes in the past. Thus, understanding the impact of those events requires information about their timing and magnitudes. While the foraminiferal fossil record provides a powerful tool to understand past environmental conditions, seep-endemic foraminifera are unknown, which limits evaluation of seep-specific information. However, geographically widespread benthic foraminifera do inhabit seep sites, as documented widely in the literature, and may provide information useful to the understanding of past methane releases. In an effort to better understand how benthic foraminifera inhabit this chemosynthesis-based ecosystem, and if they faithfully record the methane emissions, we conducted a multipronged analysis of foraminifera associated with a gas hydrate emission site in the Arctic. Our goal was to simultaneously assess, in single representative calcareous benthic foraminiferal individuals, the cell biology, test stable carbon isotope ratio, and carbonate microstructure (e.g., wall thickness, survey for authigenic overgrowths), from samples collected south of Svalbard, or on Vestnesa Ridge, west of Svalbard). Serially, each specimen was scanned with microCT (computerized tomography) to assess test characteristics, then the test dissolved by acidification while capturing gas to measure stable carbon isotope ratio via continuous-flow mass spectrometry, and finally the remaining soft parts embedded and examined for cell ultrastructure with a Transmission Electron Microscope (TEM). TEM). Data from isotopic analyses, microCT scans and TEM imaging are presented here.
    Description: This project was funded by NSF (WHOI)OCE-1634469 NSF (UFL)OCE-1634248 Norwegian Research Council223259
    Keywords: Methane seep ; Arctic ; Storfjordrenna ; Vestnesa ; Lomvi ; Benthic foraminifera ; MicroCT scan ; Stable carbon isotopes of calcite ; Ultrastructure ; TEM ; Cytology
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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