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  • Blackwell Publishing Ltd  (1)
  • Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory, Oak Ridge, Tennessee  (1)
  • 1
    ISSN: 1574-695X
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Colonization with Helicobacter pylori always results in chronic gastritis, which is controlled by infiltration of mononuclear cells and the subsequent release of cytokines like interleukin (IL)-12. To identify H. pylori factors involved in inducing cytokine production in mononuclear cells, a random H. pylori mutant library was screened for the inability to induce IL-12 production in monocyte THP-1 cells. Of the 231 random mutants screened, one mutant (M1) showed a consistent twofold decrease in the amount of IL-12 induction compared to the parental strain 1061 (P〈0.01). Further characterization of mutant M1 revealed that the kanamycin resistance cassette had integrated in the jhp0945 gene, which is situated in an H. pylori strain-specific plasticity region. Three reference strains possessing this plasticity region induced significantly higher amounts of IL-12 when compared to the H. pylori 26695 reference strain, which does not possess this plasticity region. The role in disease outcome of jhp0945 as well as the neighbouring plasticity region genes jhp0947 and jhp049 was assessed in a Dutch population cohort. Firstly, the presence of jhp0947 was completely linked with that of jhp0949 and was roughly associated with jhp0945 (P=0.072), but not with the cag pathogenicity island (PAI) (P=0.464). The presence of the jhp0947 and jhp0949 genes, but not of jhp0945, was significantly associated with duodenal ulcer disease when compared to gastritis (P=0.027). Therefore, the jhp0947–jhp0949 locus may be a novel putative H. pylori marker for disease outcome independent of the cag PAI.
    Type of Medium: Electronic Resource
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  • 2
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    Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory, Oak Ridge, Tennessee
    In:  EPIC3report ORNL/CDIAC-140, Carbon Dioxide Information Analysis Center Oak Ridge National Laboratory, Oak Ridge, Tennessee, 43 p.
    Publication Date: 2014-09-01
    Description: As part of the global synthesis effort sponsored by the Global Carbon Cycle project of the National Oceanic and Atmospheric Administration (NOAA) and U.S. Department of Energy, a comprehensive comparison was performed of inorganic carbon parameters measured on oceanographic surveys carried out under auspices of the Joint Global Ocean Flux Study and related programs. Many of the cruises were performed as part of the World Hydrographic Program of the World Ocean Circulation Experiment and the NOAA Ocean-Atmosphere Carbon Exchange Study. Total dissolved inorganic carbon (DIC), total alkalinity (TAlk), fugacity of CO2, and pH data from twenty-three cruises were checked to determine whether there were systematic offsets of these parameters between cruises. The focus was on the DIC and TAlk state variables. Data quality and offsets of DIC and TAlk were determined by using several different techniques. One approach was based on crossover analyses, where the deep-water concentrations of DIC and TAlk were compared for stations on different cruises that were within 100 km of each other. Regional comparisons were also made by using a multiple-parameter linear regression technique in which DIC or TAlk was regressed against hydrographic and nutrient parameters. When offsets of greater than 4 μmol/kg were observed for DIC and/or 6 μmol/kg were observed for TAlk, the data taken on the cruise were closely scrutinized to determine whether the offsets were systematic. Based on these analyses, the DIC data and TAlk data of three cruises were deemed of insufficient quality to be included in the comprehensive basinwide data set. For several of the cruises, small adjustments in TAlk were recommended for consistency with other cruises in the region. After these adjustments were incorporated, the inorganic carbon data from all cruises along with hydrographic, chlorofluorocarbon, and nutrient data were combined as a research-quality product for the scientific community.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Miscellaneous , notRev
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