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  • Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu  (11)
  • Elsevier  (3)
  • BioMed Central  (2)
Publikationsart
Verlag/Herausgeber
Erscheinungszeitraum
  • 1
    Publikationsdatum: 2021-01-08
    Beschreibung: Natural cycles in the seawater partial pressure of carbon dioxide (CO2) in the Gulf of Maine, which vary in surface waters from ~250 to 550 µatm seasonally, provide an opportunity to observe how the life cycle and phenology of the shelled pteropod Limacina retroversa responds to changing food, temperature and carbonate chemistry conditions. Distributional, hydrographic, and physiological sampling suggest that pteropod populations are located in the upper portion of the water column (0–150 m) with a maximum abundance above 50 m. Gene expression and shell condition measurements show that the population already experiences biomineralization stress in the winter months when measured aragonite saturation state was at a seasonal low (though slightly oversaturated), reinforcing the usefulness of this organism as a bio-indicator for pelagic ecosystem response to ocean acidification. There appear to be two reproductive events per year with one pulse timed to coincide with the spring bloom, the period with highest respiration rate, fluorescence, and pH, and a second more extended pulse in the late summer and fall when saturation states remain high and fluorescence begins to decline. During the fall there is transcriptomic evidence of lipid storage for overwintering, allowing the second generation to survive the period of low food and aragonite saturation state. Based on these observations we predict that in the future pteropods will likely be most vulnerable to changing CO2 regionally during the fall reproductive event when CO2 concentration already naturally rises and when there is the added stress of generating lipid stores.
    Materialart: Article , PeerReviewed
    Format: text
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  • 2
    Publikationsdatum: 2022-05-25
    Beschreibung: © 2009 Reitzel and Tarrant. This is an open-access article distributed under the terms of the Creative Commons Attribution License. The definitive version was published in BMC Evolutionary Biology 9 (2009): 230, doi:10.1186/1471-2148-9-230.
    Beschreibung: Nuclear receptors are a superfamily of metazoan transcription factors that regulate diverse developmental and physiological processes. Sequenced genomes from an increasing number of bilaterians have provided a more complete picture of duplication and loss of nuclear receptors in protostomes and deuterostomes but have left open the question of which nuclear receptors were present in the cnidarian-bilaterian ancestor. In addition, nuclear receptor expression and function are largely uncharacterized within cnidarians, preventing determination of conserved and novel nuclear receptor functions in the context of animal evolution. Here we report the first complete set of nuclear receptors from a cnidarian, the starlet sea anemone Nematostella vectensis. Genomic searches using conserved DNA- and ligand-binding domains revealed seventeen nuclear receptors in N. vectensis. Phylogenetic analyses support N. vectensis orthologs of bilaterian nuclear receptors in four nuclear receptor subfamilies within nuclear receptor family 2 (COUP-TF, TLL, HNF4, TR2/4) and one putative ortholog of GCNF (nuclear receptor family 6). Other N. vectensis genes grouped well with nuclear receptor family 2 but represented lineage-specific duplications somewhere within the cnidarian lineage and were not clear orthologs of bilaterian genes. Three nuclear receptors were not well-supported within any particular nuclear receptor family. The seventeen nuclear receptors exhibited distinct developmental expression patterns, with expression of several nuclear receptors limited to a subset of developmental stages. N. vectensis contains a diverse complement of nuclear receptors including orthologs of several bilaterian nuclear receptors. Novel nuclear receptors in N. vectensis may be ancient genes lost from triploblastic lineages or may represent cnidarian-specific radiations. Nuclear receptors exhibited distinct developmental expression patterns, which are consistent with diverse regulatory roles for these genes. Understanding the evolutionary relationships and developmental expression of the N. vectensis nuclear receptor complement provides insight into the evolution of the nuclear receptor superfamily and a foundation for mechanistic characterization of cnidarian nuclear receptor function.
    Beschreibung: We are grateful for financial support from the Woods Hole Oceanographic Institution (WHOI) through the Tropical Research Initiative, the Ocean Life Institute (AMT), the Academic Programs Office, and to the Beacon Institute for Rivers and Estuaries (AMR).
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
    Format: application/postscript
    Format: application/pdf
    Format: application/msword
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  • 3
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publikationsdatum: 2022-05-26
    Beschreibung: Dataset: AE1910 CTD Bottles
    Beschreibung: Bottle data from R/V Atlantic Explorer cruise AE1910 during May 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/774859
    Beschreibung: NSF Division of Ocean Sciences (NSF OCE) OCE-1829318, NSF Division of Ocean Sciences (NSF OCE) OCE-1829378
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
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  • 4
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publikationsdatum: 2022-05-26
    Beschreibung: Dataset: AE1910 CTD Profiles
    Beschreibung: CTD profiles from R/V Atlantic Explorer cruise AE1910 during May 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/774958
    Beschreibung: NSF Division of Ocean Sciences (NSF OCE) OCE-1829318, NSF Division of Ocean Sciences (NSF OCE) OCE-1829378
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 5
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publikationsdatum: 2022-05-26
    Beschreibung: Dataset: AE1910 MOCNESS Nets
    Beschreibung: MOCNESS net data from R/V Atlantic Explorer cruise AE1910 during May 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/775391
    Beschreibung: NSF Division of Ocean Sciences (NSF OCE) OCE-1829318, NSF Division of Ocean Sciences (NSF OCE) OCE-1829378
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 6
    Publikationsdatum: 2022-05-26
    Beschreibung: Dataset: coral diversity and richness
    Beschreibung: Average coral and algae cover, coral richness, and coral diversity from 8 coral reef sites in Palau. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/520476
    Beschreibung: NSF Division of Ocean Sciences (NSF OCE) OCE-1041106, NSF Division of Ocean Sciences (NSF OCE) OCE-1220529, NSF Division of Ocean Sciences (NSF OCE) OCE-1031971
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
    Publikationsdatum: 2022-05-27
    Beschreibung: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tarrant, A. M., McNamara-Bordewick, N., Blanco-Bercial, L., Miccoli, A., & Maas, A. E. Diel metabolic patterns in a migratory oceanic copepod. Journal of Experimental Marine Biology and Ecology, 545, (2021): 151643, https://doi.org/10.1016/j.jembe.2021.151643.
    Beschreibung: Diel vertical migration of zooplankton profoundly impacts the transport of nutrients and carbon through the water column. Despite the acknowledged importance of this active flux to ocean biogeochemistry, these contributions remain poorly constrained, in part because daily variations in metabolic rates are not considered or are modeled as simple functions of temperature. To address this uncertainty, we sampled the subtropical copepod Pleuromamma xiphias at 4- to 7-h intervals throughout the daily migration and measured rates of oxygen consumption, ammonium excretion, fecal pellet production and metabolic enzyme activity. No significant patterns were detected in rates of oxygen consumption or ammonium excretion for freshly caught animals over the diel cycle. Fecal pellet production was highest during mid-night, consistent with several hours of feeding near the surface. Surface feeding resulted in fecal pellet production at depth in the morning, providing direct evidence that active flux of particulate organic carbon occurs in this region. Electron transport system activity was highest during the afternoon, contrary to our prediction of reduced daytime metabolism. Activity of both glutamate dehydrogenase and citrate synthase increased during early night, reflecting higher capacity for excretion and aerobic respiration, respectively. Overall, these results show that activities of metabolic enzymes vary during diel vertical migration. The surprising observation of elevated afternoon enzyme activity coupled with daytime fecal pellet and ammonium production suggests that additional characterization of the daytime activity of migratory zooplankton is warranted.
    Beschreibung: This work was supported by the National Science Foundation [Grants OCE-1829318 to AEMand LBB, and OCE-1829378 to AMT]. Support for NM-B was provided by the Woods Hole Oceanographic Institution's Summer Student Fellows Program.
    Schlagwort(e): Active flux ; DVM ; Excretion ; Fecal pellets ; Respiration
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 8
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Zoology 11 (2014): 91, doi:10.1186/s12983-014-0091-8.
    Beschreibung: Calanus finmarchicus, a highly abundant copepod that is an important primary consumer in North Atlantic ecosystems, has a flexible life history in which copepods in the last juvenile developmental stage (fifth copepodid, C5) may either delay maturation and enter diapause or molt directly into adults. The factors that regulate this developmental plasticity are poorly understood, and few tools have been developed to assess the physiological condition of individual copepods. We sampled a cultured population of C. finmarchicus copepods daily throughout the C5 stage and assessed molt stage progression, gonad development and lipid storage. We used high-throughput sequencing to identify genes that were differentially expressed during progression through the molt stage and then used qPCR to profile daily expression of individual genes. Based on expression profiles of twelve genes, samples were statistically clustered into three groups: (1) an early period occurring prior to separation of the cuticle from the epidermis (apolysis) when expression of genes associated with lipid synthesis and transport (FABP and ELOV) and two nuclear receptors (ERR and HR78) was highest, (2) a middle period of rapid change in both gene expression and physiological condition, including local minima and maxima in several nuclear receptors (FTZ-F1, HR38b, and EcR), and (3) a late period when gonads were differentiated and expression of genes associated with molting (Torso-like, HR38a) peaked. The ratio of Torso-like to HR38b strongly differentiated the early and late groups. This study provides the first dynamic profiles of gene expression anchored with morphological markers of lipid accumulation, development and gonad maturation throughout a copepod molt cycle. Transcriptomic profiling revealed significant changes over the molt cycle in genes with presumed roles in lipid synthesis, molt regulation and gonad development, suggestive of a coupling of these processes in Calanus finmarchicus. Finally, we identified gene expression profiles that strongly differentiate between early and late development within the C5 copepodid stage. We anticipate that these findings and continued development of robust gene expression biomarkers that distinguish between diapause preparation and continuous development will ultimately enable novel studies of the intrinsic and extrinsic factors that govern diapause initiation in Calanus finmarchicus.
    Beschreibung: This work was supported by grant number OCE-1132567 from the National Science Foundation to MFB and AMT. Additional supported was provided by WHOI Early Career Scientist Awards provided to MFB and AMT.
    Schlagwort(e): Arthropod ; Crustacean ; Gene expression ; Molt cycle ; Transcriptomics
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
    Format: application/vnd.ms-excel
    Format: text/plain
    Format: application/pdf
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  • 9
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publikationsdatum: 2022-05-26
    Beschreibung: Dataset: AE1918 CTD Profiles
    Beschreibung: AE1918 was a cruise of opportunity on which two oceanographic sampling activities were conducted: a CTD cast and a MOCNESS net tow. These are the processed, binned CTD data. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/781972
    Beschreibung: NSF Division of Ocean Sciences (NSF OCE) OCE-1829318, NSF Division of Ocean Sciences (NSF OCE) OCE-1829378
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 10
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publikationsdatum: 2022-05-26
    Beschreibung: Dataset: AE1918 MOCNESS Continuous
    Beschreibung: AE1918 was a cruise of opportunity on which two oceanographic sampling activities were conducted: a CTD cast and a MOCNESS net tow. These are the continuous underway data from the MOCNESS tow. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/781545
    Beschreibung: NSF Division of Ocean Sciences (NSF OCE) OCE-1829318, NSF Division of Ocean Sciences (NSF OCE) OCE-1829378
    Repository-Name: Woods Hole Open Access Server
    Materialart: Dataset
    Standort Signatur Einschränkungen Verfügbarkeit
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