Description: Total alkalinity (TA) is one of the few measurable quantities that can be used together with other quantities to calculate concentrations of species of the carbonate system (CO2, HCO3 −, CO32−, H+, OH−). TA and dissolved inorganic carbon (DIC) are conservative quantities with respect to mixing and changes in temperature and pressure and are, therefore, used in oceanic carbon cycle models. Thus it is important to understand the changes of TA due to various biogeochemical processes such as formation and remineralization of organic matter by microalgae, precipitation and dissolution of calcium carbonate. Unfortunately deriving such changes from the common expression for TA in terms of concentrations of on-conservative chemical species (HCO3 −, CO3 2 −, B(OH)4 −, H+, OH−, etc.) is rarely obvious. Here an expression for TA (TAec) in terms of the total concentrations of certain major ions (Na+, Cl−, Ca2+ etc.) and the total concentrations of various acid-base species (total phosphate etc.) is derived from Dickson's original definition of TA under the constraint of electroneutrality. Changes of TA by various biogeochemical processes are easy to derive from this so-called explicit conservative expression for TA because each term in this expression is independent of changes of temperature or pressure within the ranges normally encountered in the ocean and obeys a linear mixing relation. Further, the constrains of electroneutrality for nutrient uptake by microalgae and photoautotrophs are discussed. A so-called nutrient-H+-compensation principle is proposed. This principle in combination with TAec allows one to make predictions for changes in TA due to uptake of nutrients that are consistent with observations. A new prediction based on this principle is the change in TA due to nitrogen fixation followed by remineralization of organic matter and subsequent nitrification of ammonia which implies a significant sink of TA in tropical and subtropical regions where most of the nitrogen fixation takes place.

Description: The influence of eddy structures on the seasonal depletion of dissolved inorganic carbon (DIC) and carbon dioxide (CO2) disequilibrium was investigated during a trans-Atlantic crossing of the Antarctic Circumpolar Current (ACC) in austral summer 2012. The Georgia Basin, downstream of the island of South Georgia (54-55°S, 36-38°W) is a highly dynamic region due to the mesoscale activity associated with the flow of the Subantarctic Front (SAF) and Polar Front (PF). Satellite sea-surface height and chlorophyll-a anomalies revealed a cyclonic cold core that dominated the northern Georgia Basin that was formed from a large meander of the PF. Warmer waters influenced by the SAF formed a smaller anticyclonic structure to the east of the basin. Both the cold core and warm core eddy structures were hotspots of carbon uptake relative to the rest of the ACC section during austral summer. This was most amplified in the cold core where greatest CO2 undersaturation (−78 μatm) and substantial surface ocean DIC deficit (5.1 mol m−2) occurred. In the presence of high wind speeds, the cold core eddy acted as a strong sink for atmospheric CO2 of 25.5 mmol m−2 day−1. Waters of the warm core displayed characteristics of the Polar Frontal Zone (PFZ), with warmer upper ocean waters and enhanced CO2 undersaturation (−59 μatm) and depletion of DIC (4.9mol m−2). A proposed mechanism for the enhanced carbon uptake across both eddy structures is based on the Ekman eddy pumping theory: (i) the cold core is seeded with productive (high chlorophyll-a) waters from the Antarctic Zone and sustained biological productivity through upwelled nutrient supply that counteracts DIC inputs from deep waters; (ii) horizontal entrainment of low-DIC surface waters (biological uptake) from the PFZ downwell within the warm core and cause relative DIC-depletion in the upper water column. The observations suggest that the formation and northward propagation of cold core eddies in the region of the PF could project low-DIC waters towards the site of Antarctic Intermediate Water formation and enhance CO2 drawdown into the deep ocean.

Description: Microzooplankton (the 20 to 200 µm size class of zooplankton) is recognised as an important part of marine pelagic ecosystems. In terms of biomass and abundance pelagic ciliates are one of the important groups of organism in microzooplankton. However, their rates - grazing and growth - , feeding behaviour and prey preferences are poorly known and understood. A set of data was assembled in order to derive a better understanding of pelagic ciliates rates, in response to parameters such as prey concentration, prey type (size and species), temperature and their own size. With these objectives, literature was searched for laboratory experiments with information on one or more of these parameters effect studied. The criteria for selection and inclusion in the database included: (i) controlled laboratory experiment with a known ciliates feeding on a known prey; (ii) presence of ancillary information about experimental conditions, used organisms - cell volume, cell dimensions, and carbon content. Rates and ancillary information were measured in units that meet the experimenter need, creating a need to harmonize the data units after collection. In addition different units can link to different mechanisms (carbon to nutritive quality of the prey, volume to size limits). As a result, grazing rates are thus available as pg C/(ciliate*h), µm**3/(ciliate*h) and prey cell/(ciliate*h); clearance rate was calculated if not given and growth rate is expressed as the growth rate per day.

Description: Microzooplankton (the 20 to 200 µm size class of zooplankton) is recognised as an important part of marine pelagic ecosystems. In terms of biomass and abundance heterotrophic dinoflagellates are one of the important groups of organism in microzooplankton. However, their rates - grazing and growth - , feeding behaviour and prey preferences are poorly known and understood. A set of data was assembled in order to derive a better understanding of heterotrophic dinoflagellates rates, in response to parameters such as prey concentration, prey type (size and species), temperature and their own size. With these objectives, literature was searched for laboratory experiments with information on one or more of these parameters effect studied. The criteria for selection and inclusion in the database included: (i) controlled laboratory experiment with a known dinoflagellate feeding on a known prey; (ii) presence of ancillary information about experimental conditions, used organisms - cell volume, cell dimensions, and carbon content. Rates and ancillary information were measured in units that meet the experimenter need, creating a need to harmonize the data units after collection. In addition different units can link to different mechanisms (carbon to nutritive quality of the prey, volume to size limits). As a result, grazing rates are thus available as pg C dinoflagellate-1 h-1, µm3 dinoflagellate-1 h-1 and prey cell dinoflagellate-1 h-1; clearance rate was calculated if not given and growth rate is expressed as the growth rate per day.

Description: The fluorophore [2-(4-pyridyl)-5{[4-dimethylaminoethyl-aminocarbamoyl)-methoxy]phenyl}oxazole], in short PDMPO, is incorporated in newly polymerized silica in diatom frustules and thereby provides a tool to estimate Si uptake, to study diatom cell cycles but also to determine mortality-independent abundance-based species specific growth rates in cultures and natural assemblages. In this study, the theoretical framework and applicability of the PDMPO staining technique to estimate diatom species specific growth rates were investigated. Three key polar diatom species, Pseudonitzschia subcurvata, Chaetoceros simplex and Thalassiosira sp., chosen to cover a broad range of species-related frustule and life-cycle characteristics, were incubated over 24 hours in control (no PDMPO) and with 0.125 µM and 0.6 µM PDMPO addition, respectively. The main assumptions tested during this study were: 1) Addition of PDMPO does not affect division rates. 2) Newly divided cells (daughter cells) can be readily recognized by their fluorescent valves and PDMPO is taken up only in newly formed valves. 3) The populations do not divide synchronously (here the impact of light-dark cycles on division was also included). Assumptions 1 and 2 were tested by comparing cell concentration-based growth rates with those based on PDMPO stain in control incubations and in incubations where PDMPO was added. This was carried out for P. subcurvata (Ps), C. simplex (Cs) and Thalassiosira sp. (Ts) acclimated to 20 µmol photon/m²/s at 0.125 µM (all species) and 0.6 µM (for Ps and Cs) PDMPO final concentration. The impact of PDMPO addition was further tested on Thalassiosira sp. acclimated at 110 µmol photon/m²/s at both 0.125 µM and 0.6 µM PDMPO final concentration.

Description: Carbon fixation by phytoplankton plays a key role in the uptake of atmospheric CO2 in the Southern Ocean. Yet, it still remains unclear how efficiently the particulate organic carbon (POC) is exported and transferred from ocean surface waters to depth during phytoplankton blooms. In addition, little is known about the processes that control the flux attenuation within the upper twilight zone. Here, we present results of downward POC and particulate organic nitrogen fluxes during the decline of a vast diatom bloom in the Atlantic sector of the Southern Ocean in summer 2012. We used thorium-234 (234Th) as a particle tracer in combination with drifting sediment traps (ST). Their simultaneous use evidenced a sustained high export rate of 234Th at 100 m depth in the weeks prior to and during the sampling period. The entire study area, of approximately 8000 km**2, showed similar vertical export fluxes in spite of the heterogeneity in phytoplankton standing stocks and productivity, indicating a decoupling between production and export. The POC fluxes at 100 m were high, averaging 26 ± 15 mmol C/m**2/d, although the strength of the biological pump was generally low. Only 〈20% of the daily primary production reached 100 m, presumably due to an active recycling of carbon and nutrients. Pigment analyses indicated that direct sinking of diatoms likely caused the high POC transfer efficiencies (~60%) observed between 100 and 300 m, although faecal pellets and transport of POC linked to zooplankton vertical migration might have also contributed to downward fluxes.

Description: A dominant Antarctic ecological paradigm suggests that winter sea ice is the feeding ground for krill larvae. However, several recent observations conflict with this hypothesis. Our study presents the first direct evidence that winter sea ice is actually a food-poor environment when compared to neighbouring open water regions. We found that complex under ice habitats are vital for larval krill, providing shelter from currents. During the day the larvae feed on the sparse ice-associated food but after sunset, they migrate into the water below the ice. This behaviour allows access to more food and promotes the dispersal of larvae to spring feeding grounds. Current larval krill overwintering and nursery habitats in the SW Atlantic are predicted to become ice-free in the future. This will lead to an enhanced food supply and faster larval development and growth but might increase the dispersal of larvae out of the SW Atlantic ecosystem.

Description: While attempting to assemble a reference image set of Southern Ocean diatoms for training automatic classification algorithms, we encountered numerous specimens which we were unable to classify unequivocally into one of three highly similar Fragilariopsis species. Problems about the delimitation of these species were also raised at the last Polar Marine Diatom Workshop in 2015 in Salamanca. The present study originated from these two sources. Using semi-automated microscopy and image analyses, we assembled a set of 501 specimen images and accompanying morphometric data, and 12 members of the polar marine diatomist community contributed their identification of these specimens independently from each other. After comparing the identification results themselves, we used the morphometric features extracted in an attempt to clarify the nature of morphometric distinction of the three taxa in uni-and bivariate analyses, and performed multivariate classification experiments and tested their agreement with expert consensus opinion. Beyond the specific insights into morphometric distinction of the studied taxa, our study also highlights some of the more generic challenges and possibilities of research at the interface between automatic identification and traditional taxonomy.

Description: This dataset includes all the Fe(II) measurements carried out during the LOHAFEX ocean iron fertilization (January- March 2009) in waters of a stable eddy located in the Atlantic sector of the Southern Ocean. Data serve the purpose to compare the effect of physicochemical and biological variables in changes in the proportion of Fe(II)/Fe(III) concentrations during the development of a flagellate/copepod bloom. Measurements were performed with a flow injection system where seawater is mixed with an alkaline luminol solution that emits lights proportionally to the concentration of reduced iron (Fe(II)). Data are split in one file showing Fe(II) concentrations before and after filtration through 0.2 mm in the upper 200 m of the water column and several files showing Fe(II) concentrations in unfiltered seawater collected with the underway sampling (11 m deep) while sailing across the fertilized patch. This is the first data sets that address the contribution of particles to Fe(II) concentrations in seawater. Transect Fe(II) data are accompanied by photosynthetic quantum efficiency (FV/FM) and chlorophyll-a data that allow the precise location of the fertilized patch edge.

Description: The Antarctic Circumpolar Current has a high potential for primary production and carbon sequestration through the biological pump. In the current study, two large-scale blooms observed in 2012 during a cruise with R.V. Polarstern were investigated with respect to phytoplankton standing stocks, primary productivity and nutrient budgets. While net primary productivity was similar in both blooms, chlorophyll a -specific photosynthesis was more efficient in the bloom closer to the island of South Georgia (39 °W, 50 °S) compared to the open ocean bloom further east (12 °W, 51 °S). We did not find evidence for light being the driver of bloom dynamics as chlorophyll standing stocks up to 165 mg/m² developed despite mixed layers as deep as 90 m. Since the two bloom regions differ in their distance to shelf areas, potential sources of iron vary. Nutrient (nitrate, phosphate, silicate) deficits were similar in both areas despite different bloom ages, but their ratios indicated more pronounced iron limitation at 12 °W compared to 39 °W. While primarily the supply of iron and not the availability of light seemed to control onset and duration of the blooms, higher grazing pressure could have exerted a stronger control toward the declining phase of the blooms.