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  • 2010-2014  (3)
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  • 1
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    A Rouse-based method to integrate the chemical composition of river sediments : application to the Ganga basin (2011)
    American Geophysical Union
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2011. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 116 (2011): F04012, doi:10.1029/2010JF001947.
    Description: The Ganga River is one of the main conveyors of sediments produced by Himalayan erosion. Determining the flux of elements transported through the system is essential to understand the dynamics of the basin. This is hampered by the chemical heterogeneity of sediments observed both in the water column and under variable hydrodynamic conditions. Using Acoustic Doppler Current Profiler (ADCP) acquisitions with sediment depth profile sampling of the Ganga in Bangladesh we build a simple model to derive the annual flux and grain size distributions of the sediments. The model shows that ca. 390 (±30) Mt of sediments are transported on average each year through the Ganga at Haring Bridge (Bangladesh). Modeled average sediment grain size parameters D50 and D84 are 27 (±4) and 123 (±9) μm, respectively. Grain size parameters are used to infer average chemical compositions of the sediments owing to a strong grain size chemical composition relation. The integrated sediment flux is characterized by low Al/Si and Fe/Si ratios that are close to those inferred for the Himalayan crust. This implies that only limited sequestration occurs in the Gangetic floodplain. The stored sediment flux is estimated to c.a. 10% of the initial Himalayan sediment flux by geochemical mass balance. The associated, globally averaged sedimentation rates in the floodplain are found to be ca. 0.08 mm/yr and yield average Himalayan erosion rate of ca. 0.9 mm/yr. This study stresses the need to carefully address the average composition of river sediments before solving large-scale geochemical budgets.
    Description: This work was supported by INSU program “Relief de la Terre” and ANR Calimero. Valier Galy was supported by the U.S. National Science Foundation (grant OCE‐0851015).
    Keywords: Ganga ; Himalaya ; Chemical composition ; Floodplain ; River sediments
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: text/plain
    Format: application/vnd.ms-excel
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  • 2
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    An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog (2013)
    BioMed Central
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    Publication Date: 2013-12-20
    Description: Background: Successful early folliculogenesis is crucial for female reproductive function. It requires appropriate gene specific expression of the different types of ovarian cells at different developmental stages. To date, most gene expression studies on the ovary were conducted in rodents and did not distinguish the type of cell. In mono-ovulating species, few studies have addressed gene expression profiles and mainly concerned human oocytes. Results: We used a laser capture microdissection method combined with RNA-seq technology to explore the transcriptome in oocytes and granulosa cells (GCs) during development of the sheep ovarian follicle. We first documented the expression profile of 15 349 genes, then focused on the 5 129 genes showing differential expression between oocytes and GCs. Enriched functional categories such as oocyte meiotic arrest and GC steroid synthesis reflect two distinct cell fates. We identified the implication of GC signal transduction pathways such as SHH, WNT and RHO GTPase. In addition, signaling pathways (VEGF, NOTCH, IGF1, etc.) and GC transzonal projections suggest the existence of complex cell-cell interactions. Finally, we highlighted several transcription regulators and specifically expressed genes that likely play an important role in early folliculogenesis. Conclusions: To our knowledge, this is the first comprehensive exploration of transcriptomes derived from in vivo oocytes and GCs at key stages in early follicular development in sheep. Collectively, our data advance our understanding of early folliculogenesis in mono-ovulating species and will be a valuable resource for unraveling human ovarian dysfunction such as premature ovarian failure (POF).
    Electronic ISSN: 1471-2164
    Topics: Biology
    Published by BioMed Central
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  • 3
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    Modeling novel stable isotope ratios in the weathering zone (2013)
    HighWire Press
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    Publication Date: 2013-04-01
    Description: When rock is converted to weathering products, the involved processes can be fingerprinted using the stable isotope ratios of metals (for example Li, Mg, Ca, Fe, Sr) and metalloids (B, Si). Here we construct a framework for interpreting these “novel” stable isotope ratios quantitatively in the compartments of the weathering zone in a geomorphic context. The approach is applicable to any novel stable isotope system and is based on a simple steady-state mass balance model that represents the weathering zone from the scale of a soil column to that of entire continents. Our model is based on the assumption that the two main processes associated with isotope fractionation are formation of secondary precipitates such as clays, and uptake of nutrients by plants.The model results show that the isotope composition of a given element in the weathering zone compartments depends on (1) the ratio between the release flux to water through primary mineral dissolution and the erosion flux of isotopically fractionated solid material, consisting of secondary precipitates and organic matter; (2) the isotope fractionation factors associated with secondary mineral precipitation and uptake by plants. A relationship is established between isotope ratios, isotope fractionation factors, and indexes for chemical weathering [such as chemical depletion fractions (CDF) and elemental mass transfer coefficients (τ)] derived from simple elemental concentration measurements. From this relationship, isotope fractionation factors can be calibrated from chemical and isotope data measured on field material. Furthermore, we show how the ratio of solid export to dissolved export of a given element from the weathering system can be estimated from the comparison of the isotope composition between bedrock, water, and sediment. This calculation can be applied to samples from soils, from rivers, and from the sedimentary record, and does not require knowing the isotope fractionation factors involved in the reactions. Finally, we apply the model to the oceanic Li isotope record reconstructed from marine carbonate sediments in order to discuss changes in global geomorphic regimes through the Cenozoic.
    Print ISSN: 0002-9599
    Electronic ISSN: 1945-452X
    Topics: Geosciences
    Published by HighWire Press on behalf of The American Journal of Science.
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