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  • 1
    ISSN: 1432-1130
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The synthesis of iodo{2,2′-[1,2-octadecanediylbis(nitrilomethylidyne)]diphenolato}cobalt is described. Liquid membrane microelectrodes based on this carrier exhibit Nernstian behaviour with a selectivity sequence according to the Hofmeister series: I– 〉 NO3 – 〉 NO2 – 〉 Cl– 〉 HCO3 – 〉 AcO–. The selectivity coefficient of nitrate over nitrite and chloride amounts to –1.6 and –2.7, respectively. The detection limit for nitrate in water amounts to 10–5.2 mol/L. A nitrate profile measured in a nitrifying biofilm is presented as a practical application.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Mud volcanism is an important natural source of the greenhouse gas methane to the hydrosphere and atmosphere. Recent investigations show that the number of active submarine mud volcanoes might be much higher than anticipated (for example, see refs 3–5), and that gas emitted ...
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Stable associations of more than one species of symbiont within a single host cell or tissue are assumed to be rare in metazoans because competition for space and resources between symbionts can be detrimental to the host. In animals with multiple endosymbionts, such as mussels from deep-sea ...
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 43 (1994), S. 1131-1138 
    ISSN: 0006-3592
    Keywords: confocal microscopy ; microelectrodes ; cell clusters ; pores ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Aerobic biofilms were found to have a complex structure consisting of microbial cell clusters (discrete aggregates of densely packed cells) and interstitial voids. The oxygen distribution was strongly correlated with these strutures. The voids facilitated oxygen transport from the bulk liquid through the biofilm, supplying approximately 50% of the total oxygen consumed by the cells. The mass transport rate from the bulk liquid is influenced by the biofilm structure; the observed exchange surface of the biofilm is twice that calculated for a simple planar geometry. The oxygen diffusion occurred in the direction normal to the cluster surfaces, the horizontal and vertical components of the oxygen gradients were of equal importance. Consequently, for calculations of mass transfer rates a three-dimensional model is necessary. These findings imply that to accurately describe biofilm activity, the relation between the arrangement of structural components and mass transfer must be undrstood. © 1994 John Wiley & Sons, Inc.
    Additional Material: 8 Ill.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 53 (1997), S. 151-158 
    ISSN: 0006-3592
    Keywords: biofilms ; biofilm structure ; diffusivity ; mass transport in biofilms ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A new technique for the determination of local diffusion coefficients in biofilms is described. It is based on the microinjection of fluorescent dyes and quantitative analysis of the subsequent plume formation using confocal laser microscopy. The diffusion coefficients of fluorescein (MW 332), TRITC-IgG (MW 150000) and phycoerythrin (MW 240000) were measured in the cell clusters and interstitial voids of a heterogeneous biofilm. The diffusivities measured in the voids were close to the theoretical values in water. Fluorescein had the same diffusivity in cell clusters, voids, and sterile medium. TRITC-IgG did not diffuse in cell clusters, presumably due to binding to the cell cluster matrix. After treatment of the biofilm with bovine serum albumin, binding capacity decreased and the diffusion coefficient could be measured. The diffusivity of phycoerythrin in cell clusters was impeded by 41%, compared to interstitial voids. From the diffusion data of phycoerythrin it was further calculated that the cell cluster matrix had the characteristics of a gel with 0.6 nm thick fibers and pore diameters of 80 nm. © 1997 John Wiley & Sons, Inc.
    Additional Material: 4 Ill.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 44 (1994), S. 636-641 
    ISSN: 0006-3592
    Keywords: biofilm ; hydrodynamics ; mass transport ; particle tracking ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Liquid flow was studied in aerobic biofilms, consisting of microbial cell clusters (discrete aggregates of densely packed cells) and interstitial voids. Fluorescein microinjection was used as a qualitative technique to determine the presence of flow in cell clusters and voids. Flow velocity profiles were determined by tracking fluorescent latex spheres using confocal microscopy. Liquid was flowing through the voids and was stagnant in the cell clusters. Consequently, in voids both diffusion and convection may contribute to mass transfer, whereas in cell clusters diffusion is the dominant factor. The flow velocity in the biofilm depended on the average flow velocity of the bulk liquid. The velocity profiles in biofilms were linear and the velocity was zero at the substratum surface. The velocity gradients within biofilms were 50% of that near walls without biofilm coverage. The influence of the biofilm roughness on the flow velocity profiles was similar to that caused by rigid roughness elements. © 1994 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
    Type of Medium: Electronic Resource
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  • 7
    Publication Date: 2023-03-14
    Keywords: DATE/TIME; DEPTH, water; ECO2; ECO2-3; ECO2-3-RBR-1; ECO2-3-RBR-2; ECO2-3-RBR-3; ECO2-3-RBR-5; ECO2-3-RBR-6; Event label; Latitude of event; Longitude of event; Oxidation reduction (RedOx) potential; Oxygen; Panarea; pH; RBR-Datalogger XR-420 D, in situ; RBRS; RBR Sensors; Sub-seabed CO2 Storage: Impact on Marine Ecosystems
    Type: Dataset
    Format: text/tab-separated-values, 63873 data points
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  • 8
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    PANGAEA
    In:  Supplement to: Fink, Artur; den Haan, Joost; Chennu, Arjun; Uthicke, Sven; de Beer, Dirk (2017): Ocean Acidification Changes Abiotic Processes but Not Biotic Processes in Coral Reef Sediments. Frontiers in Marine Science, 4, https://doi.org/10.3389/fmars.2017.00073
    Publication Date: 2023-03-09
    Description: Two coral reef sediments have been subjected to OA scenarios in the laboratory. Sediments from Magnetic Island (year 2014, 3 pCO2 treatments) were investigated under diffusive conditions in flumes. Parameters studied were: oxygen fluxes, porewater pH and oxygen concentrations. Sulfate reduction rates and pigment concentrations as a measure for microphytobenthos abundance were measured at the end of the experiment. Sediments from Davies Reef (year 2015, 2 pCO2 treatments) were studied under advective conditions using stirred chambers. Microphytobenthos growth over the experimental period was studied using hyperspectral imaging. Porewater pH profiles were measured in different regions of the chambers. Fluxes of oxygen, total alkalinity (as a measure of CaCO3 dissolution), dissolved organic carbon and nutrients were measured using incubations. Pigment concentrations were measured at the end of the experiment as a measure for microphytobenthos abundance and to calibrate the hyperspectral imaging results. In both experiments, elevated pCO2 did not affect biotic processes. Elevated pCO2 caused an increase in dissolution of the Davies Reef sediments. The porewater pH measurements indicated that this is likely caused by the dissolution of high-magnesium calcites.
    Keywords: Benthos; BIOACID; Biological Impacts of Ocean Acidification; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Coast and continental shelf; Community composition and diversity; Entire community; Laboratory experiment; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Primary production/Photosynthesis; Rocky-shore community; South Pacific; Tropical
    Type: Dataset
    Format: application/zip, 10 datasets
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  • 9
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    PANGAEA
    In:  Supplement to: Raulf, Felix F; Fabricius, Katharina Elisabeth; Uthicke, Sven; de Beer, Dirk; Abed, Raeid M M; Ramette, Alban (2015): Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea. Environmental Microbiology, 17(10), 3678-3691, https://doi.org/10.1111/1462-2920.12729
    Publication Date: 2023-03-14
    Description: Natural CO2 venting systems can mimic conditions that resemble intermediate to high pCO2 levels as predicted for our future oceans. They represent ideal sites to investigate potential long-term effects of ocean acidification on marine life. To test whether microbes are affected by prolonged exposure to pCO2 levels, we examined the composition and diversity of microbial communities in oxic sandy sediments along a natural CO2 gradient. Increasing pCO2 was accompanied by higher bacterial richness and by a strong increase in rare members in both bacterial and archaeal communities. Microbial communities from sites with CO2 concentrations close to today's conditions had different structures than those of sites with elevated CO2 levels. We also observed increasing sequence abundance of several organic matter degrading types of Flavobacteriaceae and Rhodobacteraceae, which paralleled concurrent shifts in benthic cover and enhanced primary productivity. With increasing pCO2, sequences related to bacterial nitrifying organisms such as Nitrosococcus and Nitrospirales decreased, and sequences affiliated to the archaeal ammonia-oxidizing Thaumarchaeota Nitrosopumilus maritimus increased. Our study suggests that microbial community structure and diversity, and likely key ecosystem functions, may be altered in coastal sediments by long-term CO2 exposure to levels predicted for the end of the century.
    Keywords: Aluminium; Calcium; Carbon, organic, total; Carbon, total; DATE/TIME; Depth, bathymetric; DEPTH, sediment/rock; Dobu; EsaAla; Event label; Iron; LATITUDE; LONGITUDE; Magnesium; Manganese; Nitrogen, total; pH; Phosphorus; Potassium; Rubidium; Sample ID; Silicon; South Pacific; Strontium; Sulfur, total; Titanium; Upa-Upasina
    Type: Dataset
    Format: text/tab-separated-values, 198 data points
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  • 10
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    PANGAEA
    In:  Supplement to: Van Gaever, Saskia; Moodley, Leon; de Beer, Dirk; Vanreusel, Ann (2006): Meiobenthos at the Arctic Håkon Mosby Mud Volcano with a parental caring nematode thriving in sulphide-rich sediments. Marine Ecology Progress Series, 321, 143-155, https://doi.org/10.3354/meps321143
    Publication Date: 2023-05-12
    Description: Håkon Mosby Mud Volcano (HMMV, SW Barents Sea slope, 1280 m) is one of the numerous cold methane-venting seeps existing along the continental margins. Analyses of video-guided core samples revealed extreme differences in the diversity and density of the metazoan meiobenthic communities associated with the different sub-habitats (centre, microbial mats, Pogonophora field, outer rim) of this mud volcano. Diversity was lowest in the sulphidic, microbial mat sediments that supported the highest standing stock, with unusually high densities (11000 ind./10 cm**2) of 1 nematode species related to Geomonhystera disjuncta. Stable carbon isotope analyses revealed that this nematode species was thriving on chemosynthetically derived food sources in these sediments. Ovoviviparous reproduction has been identified as an important adaptation of parents securing the survival and development of their brood in this toxic environment. The proliferation of this single species in exclusive association with free-living, sulphide-oxidising bacteria (Beggiatoa) indicates that its dominance is strongly related to trophic specialisation, evidently uncommon among the meiofauna. This chemoautotrophic association was replaced by copepods in the bare, sulphide-free sediments of the volcano's centre, dominated by aerobic methane oxidation as the chemosynthetic process. Copepods and nauplii reached maximum densities and dominance in the volcano's centre (500 ind./10 cm**2). Their strongly depleted carbon isotope signatures indicated a trophic link with methane-derived carbon. This proliferation of only selected meiobenthic species supported by chemosynthetically derived carbon suggests that, in addition to the sediment geochemistry, the associated reduced meiobenthic diversity may equally be related to the trophic resource specificity in HMMV sub-habitats.
    Keywords: ARK-XIX/3b; HERMES; Hotspot Ecosystem Research on the Margins of European Seas; MUC; MultiCorer; Norwegian Sea; Polarstern; PS64; PS64/312-1; PS64/313-1; PS64/314-1; PS64/321-1; PS64/323-1; PS64/324-1; PS64/356-1; PS64/357-1; PS64/362-1; PS64/363-1a; PS64/363-1b; PS64/367-1; PS64/390-1a; PS64/390-1c; PS64/395-1
    Type: Dataset
    Format: application/zip, 30 datasets
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