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  • 1
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    The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation (2016)
    Frontiers
    In:  Frontiers in Microbiology, 7 (75).
    Details
    Publication Date: 2019-02-01
    Description: The hydrothermal mats, mounds, and chimneys of the southern Guaymas Basin are the surface expression of complex subsurface hydrothermal circulation patterns. In this overview, we document the most frequently visited features of this hydrothermal area with photographs, temperature measurements, and selected geochemical data; many of these distinct habitats await characterization of their microbial communities and activities. Microprofiler deployments on microbial mats and hydrothermal sediments show their steep geochemical and thermal gradients at millimeter-scale vertical resolution. Mapping these hydrothermal features and sampling locations within the southern Guaymas Basin suggest linkages to underlying shallow sills and heat flow gradients. Recognizing the inherent spatial limitations of much current Guaymas Basin sampling calls for comprehensive surveys of the wider spreading region.
    Type: Article , PeerReviewed
    Format: text
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    DOI: 10.3389/fmicb.2016.00075
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 2
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    Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany) (2008)
    Elsevier
    In:  Palaeogeography, Palaeoclimatology, Palaeoecology, 262 (1-2). pp. 91-106.
    Details
    Publication Date: 2018-11-07
    Description: Cyanobacteria-dominated biofilms in a CO2-degassing karst-water creek (Westerhöfer Bach, Germany) were investigated with regard to the effects of microbial activity on CaCO3 precipitation, water chemistry of micro- and macroenvironments, stable isotopic records, and tufa fabric formation. Ex situ microelectrode measurements of pH, O2, Ca2+ and CO32− revealed that annually laminated calcified biofilms composed mainly of filamentous cyanobacteria (tufa stromatolites) strongly induced CaCO3 precipitation by photosynthesis under illumination, but inhibited precipitation by respiration in the dark. In contrast, endolithic cyanobacterial biofilms and mosses did not cause photosynthesis-induced precipitation under experimental conditions. No spontaneous precipitation occurred on bare limestone substrates, despite high calcite supersaturation of the ambient water. Mass balance calculations suggest that biofilm photosynthesis was responsible for 10–20% of Ca2+ loss in the creek, while the remaining Ca2+ loss derived from physicochemical precipitation on branches, leaves and as fine-grained calcite particles. Neither analysis of bulk water chemistry nor oxygen nor carbon stable isotopic records of the tufa stromatolites confirmed photosynthetic effects, despite the evident photosynthesis-induced calcite precipitation. Oxygen stable isotopic values reflected seasonal changes in water temperature, and carbon stable isotope values probably recorded carbon isotopic composition of dissolved inorganic carbon in the creek water. Annual lamination and fabric formation of the tufa stromatolites is suggested to vary with photosynthesis-induced calcite precipitation rates that are affected by temperature dependency of diffusion coefficients. Photosynthesis-induced precipitation resulted in encrusted cyanobacterial sheaths, reflecting syntaxial overgrowth of microcrystalline cyanobacterial tubes by microspar, instead of microcrystalline sheath impregnation, which was previously suggested as an indicator of photosynthesis-induced precipitation. Therefore, sheath impregnation or encrustation by CaCO3 cannot be used to distinguish photosynthesis-induced from physicochemically-induced CaCO3 precipitation.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1016/j.palaeo.2008.02.011
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 3
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    The O2, pH and Ca2+ Microenvironment of Benthic Foraminifera in a High CO2 World (2012)
    Public Library of Science
    In:  PLoS ONE, 7 (11). e50010.
    Details
    Publication Date: 2016-01-14
    Description: Ocean acidification (OA) can have adverse effects on marine calcifiers. Yet, phototrophic marine calcifiers elevate their external oxygen and pH microenvironment in daylight, through the uptake of dissolved inorganic carbon (DIC) by photosynthesis. We studied to which extent pH elevation within their microenvironments in daylight can counteract ambient seawater pH reductions, i.e. OA conditions. We measured the O2 and pH microenvironment of four photosymbiotic and two symbiont-free benthic tropical foraminiferal species at three different OA treatments (∼432, 1141 and 2151 µatm pCO2). The O2 concentration difference between the seawater and the test surface (ΔO2) was taken as a measure for the photosynthetic rate. Our results showed that O2 and pH levels were significantly higher on photosymbiotic foraminiferal surfaces in light than in dark conditions, and than on surfaces of symbiont-free foraminifera. Rates of photosynthesis at saturated light conditions did not change significantly between OA treatments (except in individuals that exhibited symbiont loss, i.e. bleaching, at elevated pCO2). The pH at the cell surface decreased during incubations at elevated pCO2, also during light incubations. Photosynthesis increased the surface pH but this increase was insufficient to compensate for ambient seawater pH decreases. We thus conclude that photosynthesis does only partly protect symbiont bearing foraminifera against OA.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1371/journal.pone.0050010
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  • 4
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    Eruption of a deep-sea mud volcano triggers rapid sediment movement (2014)
    Nature Publishing Group
    In:  Nature Communications, 5 (5385).
    Details
    Publication Date: 2019-07-10
    Description: Submarine mud volcanoes are important sources of methane to the water column. However, the temporal variability of their mud and methane emissions is unknown. Methane emissions were previously proposed to result from a dynamic equilibrium between upward migration and consumption at the seabed by methane-consuming microbes. Here we show non-steady-state situations of vigorous mud movement that are revealed through variations in fluid flow, seabed temperature and seafloor bathymetry. Time series data for pressure, temperature, pH and seafloor photography were collected over 431 days using a benthic observatory at the active Hakon Mosby Mud Volcano. We documented 25 pulses of hot subsurface fluids, accompanied by eruptions that changed the landscape of the mud volcano. Four major events triggered rapid sediment uplift of more than a metre in height, substantial lateral flow of muds at average velocities of 0.4m per day, and significant emissions of methane and CO2 from the seafloor.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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    DOI: 10.1038/ncomms6385
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  • 5
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    New highly fluorescent pH indicator for ratiometric RGB imaging of pCO2 (2014)
    IOP Publishing
    In:  Methods and Applications in Fluorescence, 2 (2). 024001.
    Details
    Publication Date: 2016-04-29
    Description: A new diketo-pyrrolo-pyrrole (DPP) indicator dye for optical sensing of carbon dioxide is prepared via a simple one step synthesis from commercially available low cost 'Pigment Orange 73'. The pigment is modified via alkylation of one of the lactam nitrogens with a tert-butylbenzyl group. The indicator dye is highly soluble in organic solvents and in polymers and shows pH-dependent absorption (λmax 501 and 572 nm for the protonated and deprotonated forms, respectively) and emission spectra (λmax 524 and 605 nm for the protonated and deprotonated forms, respectively). Both the protonated and the deprotonated forms show high fluorescence quantum yields (Φprot 0.86; Φdeprot 0.66). Hence, colorimetric read-out and ratiometric fluorescence intensity measurements are possible. The emission of the two forms of the indicator excellently matches the response of the green and the red channels of an RGB camera. This enables imaging of carbon dioxide distribution with a simple and low cost optical set-up. The sensor based on the new DPP dye shows very high sensitivity and is particularly promising for monitoring atmospheric levels of carbon dioxide.
    Type: Article , PeerReviewed
    Format: text
    Format: text
    DOI: 10.1088/2050-6120/2/2/024001
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  • 6
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    Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes (2013)
    Nature Publishing Group
    In:  The ISME Journal, 7 . pp. 555-567.
    Details
    Publication Date: 2019-09-23
    Description: Sediment-hosting hydrothermal systems in the Okinawa Trough maintain a large amount of liquid, supercritical and hydrate phases of CO2 in the seabed. The emission of CO2 may critically impact the geochemical, geophysical and ecological characteristics of the deep-sea sedimentary environment. So far it remains unclear whether microbial communities that have been detected in such high-CO2 and low-pH habitats are metabolically active, and if so, what the biogeochemical and ecological consequences for the environment are. In this study, RNA-based molecular approaches and radioactive tracer-based respiration rate assays were combined to study the density, diversity and metabolic activity of microbial communities in CO2-seep sediment at the Yonaguni Knoll IV hydrothermal field of the southern Okinawa Trough. In general, the number of microbes decreased sharply with increasing sediment depth and CO2 concentration. Phylogenetic analyses of community structure using reverse-transcribed 16S ribosomal RNA showed that the active microbial community became less diverse with increasing sediment depth and CO2 concentration, indicating that microbial activity and community structure are sensitive to CO2 venting. Analyses of RNA-based pyrosequences and catalyzed reporter deposition-fluorescence in situ hybridization data revealed that members of the SEEP-SRB2 group within the Deltaproteobacteria and anaerobic methanotrophic archaea (ANME-2a and -2c) were confined to the top seafloor, and active archaea were not detected in deeper sediments (13–30 cm in depth) characterized by high CO2. Measurement of the potential sulfate reduction rate at pH conditions of 3–9 with and without methane in the headspace indicated that acidophilic sulfate reduction possibly occurs in the presence of methane, even at very low pH of 3. These results suggest that some members of the anaerobic methanotrophs and sulfate reducers can adapt to the CO2-seep sedimentary environment; however, CO2 and pH in the deep-sea sediment were found to severely impact the activity and structure of the microbial community.
    Type: Article , PeerReviewed
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    Format: other
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    DOI: 10.1038/ismej.2012.124
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  • 7
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    Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment (2007)
    Nature Publishing Group
    In:  The ISME Journal, 1 (4). pp. 341-353.
    Details
    Publication Date: 2016-05-25
    Description: The ecological niche of nitrate-storing Beggiatoa, and their contribution to the removal of sulfide were investigated in coastal sediment. With microsensors a clear suboxic zone of 2-10cm thick was identified, where neither oxygen nor free sulfide was detectable. In this zone most of the Beggiatoa were found, where they oxidize sulfide with internally stored nitrate. The sulfide input into the suboxic zone was dominated by an upward sulfide flux from deeper sediment, whereas the local production in the suboxic zone was much smaller. Despite their abundance, the calculated sulfide-oxidizing capacity of the Beggiatoa could account for only a small fraction of the total sulfide removal in the sediment. Consequently, most of the sulfide flux into the suboxic layer must have been removed by chemical processes, mainly by precipitation with Fe2+ and oxidation by Fe(III), which was coupled with a pH increase. The free Fe2+ diffusing upwards was oxidized by Mn(IV), resulting in a strong pH decrease. The nitrate storage capacity allows Beggiatoa to migrate randomly up and down in anoxic sediments with an accumulated gliding distance of 4m before running out of nitrate. We propose that the steep sulfide gradient and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1038/ismej.2007.50
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  • 8
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    Microsensor studies on Padina from a natural CO2 seep: implications of morphology on acclimation to low pH (2015)
    Wiley
    In:  Journal of Phycology, 51 (6). pp. 1106-1115.
    Details
    Publication Date: 2020-07-20
    Description: Low seawater pH can be harmful to many calcifying marine organisms, but the calcifying macroalgae Padina spp. flourish at natural submarine carbon dioxide seeps where seawater pH is low. We show that the microenvironment created by the rolled thallus margin of Padina australis facilitates supersaturation of CaCO3 and calcifi-cation via photosynthesis-induced elevated pH. Using microsensors to investigate oxygen and pH dynamics in the microenvironment of P. australis at a shallow CO2 seep, we found that, under saturating light, the pH inside the microenvironment (pHME) was higher than the external seawater (pHSW) at all pHSW levels investigated, and the difference (i.e., pHME − pHSW) increased with decreasing pHSW (0.9 units at pHSW 7.0). Gross photosynthesis (Pg) inside the microenvironment increased with decreasing pHSW, but algae from the control site reached a threshold at pH 6.5. Seep algae showed no pH threshold with respect to Pg within the pHSW range investigated. The external carbonic anhydrase (CA) inhibitor, acetazolamide, strongly inhibited Pg of P. australis at pHSW 8.2, but the effect was diminished under low pHSW (6.4–7.5), suggesting a greater dependence on membrane-bound CA for the dehydration of HCO3− ions during dissolved inorganic carbon uptake at the higher pHSW. In comparison, a calcifying green alga, Halimeda cuneata f. digitata, was not inhibited by AZ, suggesting efficient bicarbonate transport. The ability of P. australis to elevate pHME at the site of calcification and its strong dependence on CA may explain why it can thrive at low pHSW.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1111/jpy.12347
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  • 9
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    The influence of pore-water advection, benthic photosynthesis, and respiration on calcium carbonate dynamics in reef sands (2012)
    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 57 (3). pp. 809-825.
    Details
    Publication Date: 2016-04-29
    Description: To investigate diel calcium carbonate (CaCO3) dynamics in permeable coral reef sands, we measured pore-water profiles and fluxes of oxygen (O2), nutrients, pH, calcium (Ca2+), and alkalinity (TA) across the sediment-water interface in sands of different permeability at Heron Reef, Australia. Background flushing rates were high, most likely as a result of infaunal burrow irrigation, but flux chamber stirring enhanced pore-water exchange. Light and pore-water advection fueled high rates of benthic primary production and calcification in sunlit surface sediments. In the light, benthic photosynthesis and calcification induced surface minima in Ca2+ and TA and peaks in pH and O2. Oxygen penetration depth in coarse sands decreased from ∼ 1.2 cm during the day to ∼ 0.6 cm at night. Total oxygen uptake (TOU) in dark chambers was three to fourteen times greater than diffusive uptake and showed a direct effect of pore-water advection. Greater sediment oxygen consumption rates were observed in higher permeability sands. In the dark, TA release was not stimulated by increasing TOU because of a damping effect of pore-water advection on metabolic CaCO3 dissolution efficiency. On a daily basis, CaCO3 undergoes net dissolution in Heron Reef sands. However, pore-water advection can reverse the CaCO3 budget and promote CaCO3 preservation under the most energetic conditions.
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.4319/lo.2012.57.3.0809
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  • 10
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    Quantification of the effects of ocean acidification on sediment microbial communities in the environment: the importance of ecosystem approaches (2016)
    Oxford University Press
    In:  FEMS Microbiology Ecology, 92 (5). fiw027.
    Details
    Publication Date: 2020-07-31
    Description: To understand how ocean acidification (OA) influences sediment microbial communities, naturally CO2-rich sites are increasingly being used as OA analogues. However, the characterization of these naturally CO2-rich sites is often limited to OA-related variables, neglecting additional environmental variables that may confound OA effects. Here, we used an extensive array of sediment and bottom water parameters to evaluate pH effects on sediment microbial communities at hydrothermal CO2seeps in Papua New Guinea. The geochemical composition of the sediment pore water showed variations in the hydrothermal signature at seep sites with comparable pH, allowing the identification of sites that may better represent future OA scenarios. At these sites, we detected a 60% shift in the microbial community composition compared with reference sites, mostly related to increases inChloroflexisequences. pH was among the factors significantly, yet not mainly, explaining changes in microbial community composition. pH variation may therefore often not be the primary cause of microbial changes when sampling is done along complex environmental gradients. Thus, we recommend an ecosystem approach when assessing OA effects on sediment microbial communities under natural conditions. This will enable a more reliable quantification of OA effects via a reduction of potential confounding effects
    Type: Article , PeerReviewed
    Format: text
    DOI: 10.1093/femsec/fiw027
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