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  • 1
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    Seawater carbonate chemistry and hatch and viability of Lingcod embryos (2022)
    PANGAEA
    Details
    Publication Date: 2024-03-15
    Description: Early life history stages of marine fishes are often more susceptible to environmental stressors than adult stages. This vulnerability is likely exacerbated for species that lay benthic egg masses bound to substrate because the embryos cannot evade locally unfavorable environmental conditions. Lingcod (Ophiodon elongatus), a benthic egg layer, is an ecologically and economically significant predator in the highly-productive California Current System (CCS). We ran a flow-through mesocosm experiment that exposed Lingcod eggs collected from Monterey Bay, CA to conditions we expect to see in the central CCS by the year 2050 and 2100. Exposure to temperature, pH, and dissolved oxygen concentrations projected by the year 2050 halved the successful hatch of Lingcod embryos and significantly reduced the size of day-1 larvae. In the year 2100 treatment, viable hatch plummeted (3% of normal), larvae were undersized (83% of normal), yolk reserves were exhausted (38% of normal), and deformities were widespread (94% of individuals). This experiment is the first to expose marine benthic eggs to future temperature, pH, and dissolved oxygen conditions in concert. Lingcod are a potential indicator species for other benthic egg layers for which global change conditions may significantly diminish recruitment rates.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Biomass/Abundance/Elemental composition; Body depth; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon; Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbon/Nitrogen ratio; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Category; Chordata; Coast and continental shelf; Date; Development; Diameter; EXP; Experiment; Fish; Fish larvae, length; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Growth/Morphology; Hatching time; Head, length; Head depth; Identification; Laboratory experiment; Larvae; Length; Mass; Monterey_Peninsula; Nekton; Nitrogen; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Oil globule area; Ophiodon elongatus; Oxygen; Oxygen, dissolved; Oxygen, dissolved, standard deviation; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Potentiometric; Potentiometric titration; Replicate; Reproduction; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Temperate; Temperature; Temperature, water; Temperature, water, standard deviation; Treatment; Type; Yolk area; δ13C; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 179910 data points
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    DATA PANGAEA
  • 2
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    Bottom side-roll feeding by humpback whales (Megaptera novaeangliae) in the southern Gulf of Maine, U.S.A (2014)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine Mammal Science 30 (2014): 494–511, doi:10.1111/mms.12053.
    Description: Humpback whales (Megaptera novaeangliae) are known for the variety and complexity of their feeding behaviors. Here we report on the use of synchronous motion and acoustic recording tags (DTAGs) to provide the first detailed kinematic descriptions of humpback whales using bottom side-rolls (BSRs) to feed along the seafloor. We recorded 3,505 events from 19 animals (individual range 8–722). By animal, mean BSR duration ranged from 14.1 s to 36.2 s.; mean body roll angle from 80º to 121º, and mean pitch from 7º to 38º. The median interval between sequential BSRs, by animal, ranged from 24.0 s to 63.6 s and animals tended to maintain a consistent BSR heading during long BSR series encompassing multiple dives. BSRs were most frequent between 2200 and 0400. We identify three classes of behavior: simple side-roll, side-roll inversion, and repetitive scooping. Results indicate that BSR feeding is a common technique in the study area and there is both coordination and noncoordination between animals. We argue that this behavior is not lunge feeding as normally characterized, because animals are moving slowly through the event. The behavior also leads to vulnerability to entanglement in bottom-set fishing gear, a major mortality factor for the species.
    Description: Funding for TrackPlot development was provided by an ONR grant to Colin Ware (ONR N0014091601) and from NOAA Grant #NA05NOS4001153 to the Center for Coastal and Ocean Mapping. Field work and analysis was supported by Office of Naval Research grant N00014-08-0630 (to SEP, DW), National Oceanographic Partnership Program (to DW), the Stellwagen Bank National Marine Sanctuary and the Office of National Marine Sanctuaries.
    Keywords: Humpback whale ; Megaptera novaeangliae ; Bottom feeding ; Bottom side-rolls ; Coordination ; Entanglement
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: application/msword
    Format: video/3gp
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    PAPER (OA)
  • 3
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    Diel changes in humpback whale Megaptera novaeangliae feeding behavior in response to sand lance Ammodytes spp. behavior and distribution (2011)
    Inter-Research
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2009. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 395 (2009): 91-100, doi:10.3354/meps08003.
    Description: Humpback whales Megaptera novaeangliae have adopted unique feeding strategies to take advantage of behavioral changes in their prey. However, logistical constraints have largely limited ecological analyses of these interactions. Our objectives were to (1) link humpback whale feeding behaviors to concurrent measurements of prey using scientific echo-sounders, and (2) quantify how sand lance behavior influences the feeding behaviors and foraging ecology of humpback whales. To measure, in fine detail, the 3-dimensional orientation and movement patterns of humpback whales underwater, we used a multi-sensor tag attached via suction cups (DTAG). We tested the specific hypothesis that the diel movement patterns of sand lance between bottom substrate and the water column correlates to changes between surface and bottom feeding strategies of humpback whales on Stellwagen Bank, MA. We collected over 96 h of both day- and nighttime data from 15 whales in 2006, and recorded 393 surface and 230 bottom feeding events. Individual whales exhibit both surface and bottom feeding behaviors, switching from one to the other in relation to changing light and prey conditions. Surface feeding behaviors were individually variable in their constitution but ubiquitously biased towards daylight hours, when prey was most abundant in the upper portion of the water column. Bottom feeding behavior occurred largely at night, coincident with when sand lance descend to seek refuge in the substrate. Our data provide novel insights into the behavioral ecology of humpback whales and their prey, indicating significant diel patterns in foraging behaviors concurrent with changes in prey behavior.
    Description: This research was carried out under MMPA Permit #981-1707-01.
    Keywords: Humpback whales ; Sand lance ; Diel feeding ; Predator–prey interactions
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 4
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    Seasonal-to-interannual prediction of North American coastal marine ecosystems: forecast methods, mechanisms of predictability, and priority developments (2020)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jacox, M. G., Alexander, M. A., Siedlecki, S., Chen, K., Kwon, Y., Brodie, S., Ortiz, I., Tommasi, D., Widlansky, M. J., Barrie, D., Capotondi, A., Cheng, W., Di Lorenzo, E., Edwards, C., Fiechter, J., Fratantoni, P., Hazen, E. L., Hermann, A. J., Kumar, A., Miller, A. J., Pirhalla, D., Buil, M. P., Ray, S., Sheridan, S. C., Subramanian, A., Thompson, P., Thorne, L., Annamalai, H., Aydin, K., Bograd, S. J., Griffis, R. B., Kearney, K., Kim, H., Mariotti, A., Merrifield, M., & Rykaczewski, R. Seasonal-to-interannual prediction of North American coastal marine ecosystems: forecast methods, mechanisms of predictability, and priority developments. Progress in Oceanography, 183, (2020): 102307, doi:10.1016/j.pocean.2020.102307.
    Description: Marine ecosystem forecasting is an area of active research and rapid development. Promise has been shown for skillful prediction of physical, biogeochemical, and ecological variables on a range of timescales, suggesting potential for forecasts to aid in the management of living marine resources and coastal communities. However, the mechanisms underlying forecast skill in marine ecosystems are often poorly understood, and many forecasts, especially for biological variables, rely on empirical statistical relationships developed from historical observations. Here, we review statistical and dynamical marine ecosystem forecasting methods and highlight examples of their application along U.S. coastlines for seasonal-to-interannual (1–24 month) prediction of properties ranging from coastal sea level to marine top predator distributions. We then describe known mechanisms governing marine ecosystem predictability and how they have been used in forecasts to date. These mechanisms include physical atmospheric and oceanic processes, biogeochemical and ecological responses to physical forcing, and intrinsic characteristics of species themselves. In reviewing the state of the knowledge on forecasting techniques and mechanisms underlying marine ecosystem predictability, we aim to facilitate forecast development and uptake by (i) identifying methods and processes that can be exploited for development of skillful regional forecasts, (ii) informing priorities for forecast development and verification, and (iii) improving understanding of conditional forecast skill (i.e., a priori knowledge of whether a forecast is likely to be skillful). While we focus primarily on coastal marine ecosystems surrounding North America (and the U.S. in particular), we detail forecast methods, physical and biological mechanisms, and priority developments that are globally relevant.
    Description: This study was supported by the NOAA Climate Program Office’s Modeling, Analysis, Predictions, and Projections (MAPP) program through grants NA17OAR4310108, NA17OAR4310112, NA17OAR4310111, NA17OAR4310110, NA17OAR4310109, NA17OAR4310104, NA17OAR4310106, and NA17OAR4310113. This paper is a product of the NOAA/MAPP Marine Prediction Task Force.
    Keywords: Prediction ; Predictability ; Forecast ; Ecological forecast ; Mechanism ; Seasonal ; Interannual ; Large marine ecosystem
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
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    Diving behavior and fine-scale kinematics of free-ranging Risso's dolphins foraging in shallow and deep-water habitats (2019)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Arranz, P., Benoit-Bird, K. J., Friedlaender, A. S., Hazen, E. L., Goldbogen, J. A., Stimpert, A. K., DeRuiter, S. L., Calambokidis, J., Southall, B. L., Fahlman, A., & Tyack, P. L. Diving behavior and fine-scale kinematics of free-ranging Risso's dolphins foraging in shallow and deep-water habitats. Frontiers in Ecology and Evolution, 7, (2019):53, doi:10.3389/fevo.2019.00053.
    Description: Air-breathing marine predators must balance the conflicting demands of oxygen conservation during breath-hold and the cost of diving and locomotion to capture prey. However, it remains poorly understood how predators modulate foraging performance when feeding at different depths and in response to changes in prey distribution and type. Here, we used high-resolution multi-sensor tags attached to Risso's dolphins (Grampus griseus) and concurrent prey surveys to quantify their foraging performance over a range of depths and prey types. Dolphins (N = 33) foraged in shallow and deep habitats [seabed depths less or more than 560 m, respectively] and within the deep habitat, in vertically stratified prey features occurring at several aggregation levels. Generalized linear mixed-effects models indicated that dive kinematics were driven by foraging depth rather than habitat. Bottom-phase duration and number of buzzes (attempts to capture prey) per dive increased with depth. In deep dives, dolphins were gliding for 〉50% of descent and adopted higher pitch angles both during descent and ascents, which was likely to reduce energetic cost of longer transits. This lower cost of transit was counteracted by the record of highest vertical swim speeds, rolling maneuvers and stroke rates at depth, together with a 4-fold increase in the inter-buzz interval (IBI), suggesting higher costs of pursuing, and handling prey compared to shallow-water feeding. In spite of the increased capture effort at depth, dolphins managed to keep their estimated overall metabolic rate comparable across dive types. This indicates that adjustments in swimming modes may enable energy balance in deeper dives. If we think of the surface as a central place where divers return to breathe, our data match predictions that central place foragers should increase the number and likely quality of prey items at greater distances. These dolphins forage efficiently from near-shore benthic communities to depth-stratified scattering layers, enabling them to maximize their fitness.
    Description: Funding for the SOCAL-BRS project was provided by the Chief of Naval Operations Environmental Readiness Division, the US Navy's Living Marine Resources Program, and the Office of Naval Research Marine Mammal Program. Experiments were performed under the US National Marine Fisheries Service (NMFS) (Permit # 14534-2), Channel Islands National Marine Sanctuary (Permit # 2010-003) (BS principal investigator for both) and IACUC permits issued to the project investigators. The Strategic Environmental Research and Development Program via an Army Corps of Engineers Contract (KB-B and BS) provided funding for data collection and prey analysis. PT acknowledges support from ONR grant N00014-15-1-2553 and from the MASTS pooling initiative (Marine Alliance for Science and Technology for Scotland; supported by the Scottish Funding Council, grant reference HR09011, and contributing institutions).
    Keywords: deep diving odontocete ; oraging energetics ; marine mammal ; Grampus griseus ; activity level ; prey value ; central place foraging theory
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
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    The relationship among oceanography, prey fields, and beaked whale foraging habitat in the Tongue of the Ocean (2011)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: This article is distributed under the terms of the Creative Commons CC0 public domain dedication. The definitive version was published in PLoS One 6 (2011): e19269, doi:10.1371/journal.pone.0019269.
    Description: Beaked whales, specifically Blainville's (Mesoplodon densirostris) and Cuvier's (Ziphius cavirostris), are known to feed in the Tongue of the Ocean, Bahamas. These whales can be reliably detected and often localized within the Atlantic Undersea Test and Evaluation Center (AUTEC) acoustic sensor system. The AUTEC range is a regularly spaced bottom mounted hydrophone array covering 〉350 nm2 providing a valuable network to record anthropogenic noise and marine mammal vocalizations. Assessments of the potential risks of noise exposure to beaked whales have historically occurred in the absence of information about the physical and biological environments in which these animals are distributed. In the fall of 2008, we used a downward looking 38 kHz SIMRAD EK60 echosounder to measure prey scattering layers concurrent with fine scale turbulence measurements from an autonomous turbulence profiler. Using an 8 km, 4-leaf clover sampling pattern, we completed a total of 7.5 repeat surveys with concurrently measured physical and biological oceanographic parameters, so as to examine the spatiotemporal scales and relationships among turbulence levels, biological scattering layers, and beaked whale foraging activity. We found a strong correlation among increased prey density and ocean vertical structure relative to increased click densities. Understanding the habitats of these whales and their utilization patterns will improve future models of beaked whale habitat as well as allowing more comprehensive assessments of exposure risk to anthropogenic sound.
    Description: The data collection and analysis was funded by the Office of Naval Research as N00014-08-1-1162.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 7
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    A standardisation framework for bio-logging data to advance ecological research and conservation (2021)
    Wiley
    Details
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sequeira, A. M. M., O'Toole, M., Keates, T. R., McDonnell, L. H., Braun, C. D., Hoenner, X., Jaine, F. R. A., Jonsen, I. D., Newman, P., Pye, J., Bograd, S. J., Hays, G. C., Hazen, E. L., Holland, M., Tsontos, V. M., Blight, C., Cagnacci, F., Davidson, S. C., Dettki, H., Duarte, C. M., Dunn, D. C., Eguiluz, V. M., Fedak, M., Gleiss, A. C., Hammerschlag, N., Hindell, M. A., Holland, K., Janekovic, I., McKinzie, M. K., Muelbert, M. M. C., Pattiaratchi, C., Rutz, C., Sims, D. W., Simmons, S. E., Townsend, B., Whoriskey, F., Woodward, B., Costa, D. P., Heupel, M. R., McMahon, C. R., Harcourt, R., & Weise, M. A standardisation framework for bio-logging data to advance ecological research and conservation. Methods in Ecology and Evolution, 12, (2021): 996–1007, https://doi.org/10.1111/2041-210X.13593.
    Description: 1. Bio-logging data obtained by tagging animals are key to addressing global conservation challenges. However, the many thousands of existing bio-logging datasets are not easily discoverable, universally comparable, nor readily accessible through existing repositories and across platforms, slowing down ecological research and effective management. A set of universal standards is needed to ensure discoverability, interoperability and effective translation of bio-logging data into research and management recommendations. 2. We propose a standardisation framework adhering to existing data principles (FAIR: Findable, Accessible, Interoperable and Reusable; and TRUST: Transparency, Responsibility, User focus, Sustainability and Technology) and involving the use of simple templates to create a data flow from manufacturers and researchers to compliant repositories, where automated procedures should be in place to prepare data availability into four standardised levels: (a) decoded raw data, (b) curated data, (c) interpolated data and (d) gridded data. Our framework allows for integration of simple tabular arrays (e.g. csv files) and creation of sharable and interoperable network Common Data Form (netCDF) files containing all the needed information for accuracy-of-use, rightful attribution (ensuring data providers keep ownership through the entire process) and data preservation security. 3. We show the standardisation benefits for all stakeholders involved, and illustrate the application of our framework by focusing on marine animals and by providing examples of the workflow across all data levels, including filled templates and code to process data between levels, as well as templates to prepare netCDF files ready for sharing. 4. Adoption of our framework will facilitate collection of Essential Ocean Variables (EOVs) in support of the Global Ocean Observing System (GOOS) and inter-governmental assessments (e.g. the World Ocean Assessment), and will provide a starting point for broader efforts to establish interoperable bio-logging data formats across all fields in animal ecology.
    Description: We are thankful to ONR and UWA OI for funding the workshop, and to ARC for DP210103091. A.M.M.S. was funded by a 2020 Pew Fellowship in Marine Conservation, and also supported by AIMS. C.R. was the recipient of a Radcliffe Fellowship at the Radcliffe Institute for Advanced Study, Harvard University.
    Keywords: bio-logging template ; data accessibility and interoperability ; data standards ; metadata templates ; movement ecology ; sensors ; telemetry ; tracking
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
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    PICES Press, Vol. 31, No. 1, Winter 2023 (2023)
    North Pacific Marine Science Organization (PICES) | Sidney, British Columbia
    Details
    Publication Date: 2023-07-21
    Description: Science Board Meeting 2022 — Note from the Science Board Chair. FUTURE SSC’s 8th Annual Meeting ~ Highlights. PICES-2022 and the first hybrid annual meeting. Featuring PICES-2022 Award recipients: (Chair Award, Wooster Award, Zhu-Peterson Award, PICES Ocean Monitoring Service Award, ECS Best Presentation Awards). PICES-2022 Workshop Reports: (W1: Distributions of pelagic, demersal, and benthic species associated with seamounts in the North Pacific Ocean and factors influencing their distributions, W2: Integrated Ecosystem Assessment (IEA) to understand the present and future of the Central Arctic Ocean (CAO) and Northern Bering and Chukchi Seas (NBS-CS), W3: SmartNet: Promoting PICES and ICES Leadership in the UN Decade of Ocean Science for Sustainable Development, W4: Exploring Engagement Opportunities for Early Career Ocean Professionals (ECOPs) within PICES and Internationally, W5: Integrating biological research, fisheries science and management of broadly distributed flatfish species across the North Pacific Ocean in the face of climate and environmental variability, W7: Anthropogenic stressors, mechanisms and potential impacts on Marine Birds, Mammals, and Sea Turtles, W8: Science Communication Training: How to Create Memorable PICES Science Stories, W10: A TCODE Workshop on “Openly Discoverable, Accessible, and Reusable Data and Information in the U.N. Decade”). PICES AP-NPCOOS "Ocean Big Data" Summer School. PICES AP-CREAMS Virtual Summer School on Ocean Turbulence: From Observing to Research. Science and Innovation to Scale Up Ocean Action: UN Ocean Conference 2022. ECOP Perspective on the 4th Early Career Scientist Conference (ECSC4). Symposium in Lisbon Re-unites the Global Community Investigating Small Pelagic Fish. SPF2022 Symposium Workshop Reports: (1: Application of Genetics to Small Pelagic Fish, 2: The Devil’s in the Details of Using Species Distribution Models to Inform Multispecies and Ecosystem Models, 3: Small Pelagics for Whom? Challenges and Opportunities for the Equitable Distribution of Nutritional Benefits, 4: Evaluating Inter-Sectoral Tradeoffs and Community-Level Response to Spatio-Temporal Changes in Forage Distribution and Abundance, 5: Recent Advances in the Daily Egg Production Method (DEPM): Challenges and Opportunities, 6: Small Pelagic Fish Reproductive Resilience). SOLAS Open Science Conference, 2022. Early Career Scientist Participation in SOLAS Open Science Conference, 2022. PICES SeaTurtle researchers find clues linking derelict fishing lines of “Urban Fishermen” to sea turtle stranding. NPAFC's IYS Synthesis Symposium - Key Takeaways. The Bering Sea: Current Status and Recent Trends. Western North Pacific: Current status and recent topic: Sea Surface Temperature during the 2022 warm season, The Northeast Pacific: Update on marine heatwave status and trends. PICES Events Calendar. PICES by the Numbers, and an Invitation to join SG-GREEN. Open call for PICES Press submissions | About PICES Press
    Description: Published
    Description: Non Refereed
    Repository Name: AquaDocs
    Type: Book/Monograph/Conference Proceedings
    Format: 111
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  • 9
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    Future Ocean Observations to Connect Climate, Fisheries and Marine Ecosystems (2019)
    thesis
    In:  Frontiers in Marine Science, 6 . Art.Nr. UNSP 550.
    Details
    Publication Date: 2022-01-31
    Description: Advances in ocean observing technologies and modeling provide the capacity to revolutionize the management of living marine resources. While traditional fisheries management approaches like single-species stock assessments are still common, a global effort is underway to adopt ecosystem-based fisheries management (EBFM) approaches. These approaches consider changes in the physical environment and interactions between ecosystem elements, including human uses, holistically. For example, integrated ecosystem assessments aim to synthesize a suite of observations (physical, biological, socioeconomic) and modeling platforms [ocean circulation models, ecological models, short-term forecasts, management strategy evaluations (MSEs)] to assess the current status and recent and future trends of ecosystem components. This information provides guidance for better management strategies. A common thread in EBFM approaches is the need for high-quality observations of ocean conditions, at scales that resolve critical physical-biological processes and are timely for management needs. Here we explore options for a future observing system that meets the needs of EBFM by (i) identifying observing needs for different user groups, (ii) reviewing relevant datasets and existing technologies, (iii) showcasing regional case studies, and (iv) recommending observational approaches required to implement EBFM. We recommend linking ocean observing within the context of Global Ocean Observing System (GOOS) and other regional ocean observing efforts with fisheries observations, new forecasting methods, and capacity development, in a comprehensive ocean observing framework.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
    DOI: 10.3389/fmars.2019.00550
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    OceanRep: Article in a Scientific Journal - peer-reviewed
  • 10
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    SPF - Workshop 2: The Devil's in the Details of Using Species Distribution Models to Inform Multispecies and Ecosystem Models (2023)
    North Pacific Marine Science Organization
    Details
    Publication Date: 2024-02-27
    Type: Article , NonPeerReviewed
    Format: text
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    OceanRep: Article in newspapers or magazines
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