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  • 1
    Publication Date: 2021-02-08
    Description: Highlights • Gases collected from dry seepages and bubbling or dissolved in springs of the ophiolitic body of Kizildag (Turkey). • Large compositional variation (H2- CH4 or N2-dominated) • Hydrogen derives from low temperature serpentinization processes • Methane mainly derives from abiotic processes • Large isotopic fractionation of methane at one site due to biological oxidation Abstract We investigated the geochemical features of the gases released from the Kizildag ophiolitic complex (Hatay, Turkey). Twenty-three samples both dissolved in hyperalkaline waters and free gases (bubbling gases and dry seeps) were collected. Samples were analysed for their chemical (He, H2, O2, N2, CH4 and CO2) and isotopic (He, δ13C-CH4, δ2H-CH4, δ2H-H2) composition including the content and C-isotopic composition of C2 to C5 alkanes in free gases. Analytical results evidence H2 production through low-temperature (〈80 °C) serpentinization processes and subsequent abiogenic CH4 production through Fischer-Tropsch-type reactions. In some sample small additions of methane either of microbial or of thermogenic origin can be hypothesized. At one of the sites (Kisecik) a clear fractionation pattern due to microbial methane oxidation leading to strongly enriched isotopic values (δ13C +15‰ and δ2H −68‰) and depletion in methane concentrations has been evidenced. At the dry gas seep of Kurtbagi methane flux measurements have been made and a preliminary output estimation of about 1000 kg per year has been obtained.
    Type: Article , PeerReviewed
    Format: text
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  • 2
    Publication Date: 2021-02-15
    Description: The Favara Grande is a geothermal area located on Pantelleria Island, Italy. The area is characterized high temperatures in the top layer of the soil (60°C), low pH (3–5) and hydrothermal gas emissions mainly composed of carbon dioxide (CO2), methane (CH4), and hydrogen (H2). These geothermal features may provide a suitable niche for the growth of chemolithotrophic thermoacidophiles, including the lanthanide-dependent methanotrophs of the phylum Verrucomicrobia. In this study, we started enrichment cultures inoculated with soil of the Favara Grande at 50 and 60°C with CH4 as energy source and medium containing sufficient lanthanides at pH 3 and 5. From these cultures, a verrucomicrobial methanotroph could be isolated via serial dilution and floating filters techniques. The genome of strain AP8 was sequenced and based on phylogenetic analysis we propose to name this new species Methylacidimicrobium thermophilum AP8. The transcriptome data at μmax (0.051 ± 0.001 h−1, doubling time ~14 h) of the new strain showed a high expression of the pmoCAB2 operon encoding the membrane-bound methane monooxygenase and of the gene xoxF1, encoding the lanthanide-dependent methanol dehydrogenase. A second pmoCAB operon and xoxF2 gene were not expressed. The physiology of strain AP8 was further investigated and revealed an optimal growth in a pH range of 3–5 at 50°C, representing the first thermophilic strain of the genus Methylacidimicrobium. Moreover, strain AP8 had a KS(app) for methane of 8 ± 1 μM. Beside methane, a type 1b [NiFe] hydrogenase enabled hydrogen oxidation at oxygen concentrations up to 1%. Taken together, our results expand the knowledge on the characteristics and adaptations of verrucomicrobial methanotrophs in hydrothermal environments and add a new thermophilic strain to the genus Methylacidimicrobium.
    Description: Published
    Description: 637762
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Verrucomicrobia ; acidophilic ; methanotroph ; hydrogenase ; Methylacidimicrobium thermophilum AP8 ; 05. General
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2020-11-09
    Description: Volcanic and geothermal environments are characterized by low pH, high temperatures, and gas emissions consisting of mainly CO2 and varied CH4, H2S, and H2 contents which allow the formation of chemolithoautotrophic microbial communities. To determine the link between the emitted gases and the microbial community composition, geochemical and metagenomic analysis were performed. Soil samples of the geothermic region Favara Grande (Pantelleria, Italy) were taken at various depths (1 to 50 cm). Analysis of the gas composition revealed that CH4 and H2 have the potential to serve as the driving forces for the microbial community. Our metagenomic analysis revealed a high relative abundance of Bacteria in the top layer (1 to 10 cm), but the relative abundance of Archaea increased with depth from 32% to 70%. In particular, a putative hydrogenotrophic methanogenic archaeon, related to Methanocella conradii, appeared to have a high relative abundance (63%) in deeper layers. A variety of [NiFe]-hydrogenase genes were detected, showing that H2 was an important electron donor for microaerobic microorganisms in the upper layers. Furthermore, the bacterial population included verrucomicrobial and proteobacterial methanotrophs, the former showing an up to 7.8 times higher relative abundance. Analysis of the metabolic potential of this microbial community showed a clear capacity to oxidize CH4 aerobically, as several genes for distinct particulate methane monooxygenases and lanthanide-dependent methanol dehydrogenases (XoxF-type) were retrieved. Analysis of the CO2 fixation pathways showed the presence of the Calvin-Benson-Bassham cycle, the Wood-Ljungdahl pathway, and the (reverse) tricarboxylic acid (TCA) cycle, the latter being the most represented carbon fixation pathway. This study indicates that the methane emissions in the Favara Grande might be a combination of geothermal activity and biological processes and further provides insights into the diversity of the microbial population thriving on CH4 and H2IMPORTANCE The Favara Grande nature reserve on the volcanic island of Pantelleria (Italy) is known for its geothermal gas emissions and high soil temperatures. These volcanic soil ecosystems represent "hot spots" of greenhouse gas emissions. The unique community might be shaped by the hostile conditions in the ecosystem, and it is involved in the cycling of elements such as carbon, hydrogen, sulfur, and nitrogen. Our metagenome study revealed that most of the microorganisms in this extreme environment are only distantly related to cultivated bacteria. The results obtained profoundly increased the understanding of these natural hot spots of greenhouse gas production/degradation and will help to enrich and isolate the microbial key players. After isolation, it will become possible to unravel the molecular mechanisms by which they adapt to extreme (thermo/acidophilic) conditions, and this may lead to new green enzymatic catalysts and technologies for industry.
    Description: Published
    Description: e00517-20
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: geothermal ; hydrogen ; metagenomics ; methane ; methanogenesis ; methanotroph ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2021-06-14
    Description: Verrucomicrobial methanotrophs are a group of aerobic bacteria isolated from volcanic environments. They are acidophiles, characterized by the presence of a particulate methane monooxygenase (pMMO) and a XoxF-type methanol dehydrogenase (MDH). Metagenomic analysis of DNA extracted from the soil of Favara Grande, a geothermal area on Pantelleria Island, Italy, revealed the presence of two verrucomicrobial Metagenome Assembled Genomes (MAGs). One of these MAGs did not phylogenetically classify within any existing genus. After extensive analysis of the MAG, we propose the name of "Candidatus Methylacidithermus pantelleriae" PQ17 gen. nov. sp. nov. The MAG consisted of 2,466,655 bp, 71 contigs and 3,127 predicted coding sequences. Completeness was found at 98.6% and contamination at 1.3%. Genes encoding the pMMO and XoxF-MDH were identified. Inorganic carbon fixation might use the Calvin-Benson-Bassham cycle since all genes were identified. The serine and ribulose monophosphate pathways were incomplete. The detoxification of formaldehyde could follow the tetrahydrofolate pathway. Furthermore, "Ca. Methylacidithermus pantelleriae" might be capable of nitric oxide reduction but genes for dissimilatory nitrate reduction and nitrogen fixation were not identified. Unlike other verrucomicrobial methanotrophs, genes encoding for enzymes involved in hydrogen oxidation could not be found. In conclusion, the discovery of this new MAG expands the diversity and metabolism of verrucomicrobial methanotrophs.
    Description: Published
    Description: 666929
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Verrucomicrobia ; acidophilic ; methanotroph ; Ca. Methylacidithermus pantelleriae ; volcanic soil ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 5
    Publication Date: 2021-06-14
    Description: The genus Methylobacter is considered an important and often dominant group of aerobic methane-oxidizing bacteria in many oxic ecosystems, where members of this genus contribute to the reduction of CH4 emissions. Metagenomic studies of the upper oxic layers of geothermal soils of the Favara Grande, Pantelleria, Italy, revealed the presence of various methane-oxidizing bacteria, and resulted in a near complete metagenome assembled genome (MAG) of an aerobic methanotroph, which was classified as a Methylobacter species. In this study, the Methylobacter sp. B2 MAG was used to investigate its metabolic potential and phylogenetic affiliation. The MAG has a size of 4,086,539 bp, consists of 134 contigs and 3955 genes were found, of which 3902 were protein coding genes. All genes for CH4 oxidation to CO2 were detected, including pmoCAB encoding particulate methane monooxygenase (pMMO) and xoxF encoding a methanol dehydrogenase. No gene encoding a formaldehyde dehydrogenase was present and the formaldehyde to formate conversion follows the tetrahydromethanopterin (H4MPT) pathway. "Ca. Methylobacter favarea" B2 uses the Ribulose-Mono-Phosphate (RuMP) pathway for carbon fixation. Analysis of the MAG indicates that Na+/H+ antiporters and the urease system might be important in the maintenance of pH homeostasis of this strain to cope with acidic conditions. So far, thermoacidophilic Methylobacter species have not been isolated, however this study indicates that members of the genus Methylobacter can be found in distinct ecosystems and their presence is not restricted to freshwater or marine sediments.
    Description: Published
    Description: 313-324
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Methane ; Methanotroph ; Volcanic soil ; Metabolic potential ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 6
    Publication Date: 2020-05-26
    Description: Volatiles are transported from the deep crust or mantle to the surface in geodynamically active areas where seismic, volcanic and geothermal activity is present; the circulation of hydrothermal fluids in the crust is enhanced. In such areas, faults may act as preferential pathways for advective gas-carrying fluid transport. Towards the surface, pressure decrease allows the gases to escape from the fluids into soil gas and eventually into the atmosphere (King, 1986). The migration of carbon-bearing crustal and mantle fluids contributes to Earth’s carbon cycle (Berner & Kothavala 2001). However, till now, the mechanisms, magnitudes and time variations of carbon transfer from depth to the surface remain the least understood parts of the global carbon budget. Carbon dioxide and methane are the main contributors of the total amount of C-degassing from geological (volcanic and non-volcanic) sources. From the beginning of the last century, high attention has been paid to the reservoirs of CO2 and CH4 in the atmosphere because they represent the most dangerous species in terms of global warning. The increased amount of carbon dioxide and methane in the atmosphere has important implications for the energy balance and the chemical composition of the atmosphere. Mörner and Etiope (2002) calculated that 102-103 Mt of CO2 are presumably involved in the carbon cycle every year. This estimation though, is affected by high uncertainty as a number of sources and C-degassing environments that account for this high leakage were not taken into consideration. Greece belongs to the most geodynamically active regions of the world and as such, it has to be considered an area of intense geogenic degassing. Regarding carbon, the territory is characterized by the high hydrothermal and volcanic activity of the South Aegean Active Volcanic Arc (SAAVA), and by widespread geological seeps of buried carbon dioxide and methane. In the present work, we present more than 700 literature data of free gases spread along the whole Hellenic territory to get insight on geographic distribution and composition of the released fluids. Moreover, we review all the published studies on CO2 and/or CH4 output of high degassing areas of Greece that are mainly concentrated along the SAAVA in a first attempt to estimate the total geologic output of the nation. Helium isotope data propose that the highest mantle contribution (50 to 90%) is found along the SAAVA, whereas the lowest in continental Greece (0-20%), with the atmospheric contribution being mostly negligible. Based on the geographical distribution of the gases, it is evident that the R/RA ratios and CO2 concentrations increase in areas characterized by: i) thin crust; ii) elevated heat flow values; iii) recent (Pleistocene-Quaternary) volcanic activity; and iv) deep routed extensional or transtensional regional faults. The highest values are therefore found along the SAAVA and the lowest in the western part of Greece where CH4 emission is prevailing. Furthermore, it was noticed that the majority of the samples present a prevailing limestone C component, whilst only few samples have a prevailing mantle C component (Sano and Marty, 1995). It seems barely possible though to distinguish CO2 deriving from crustal and slab-related limestones. Additionally, due to the complex geodynamic history, the mantle C isotope composition could be affected by subduction-related metasomatism and, similarly to the nearby Italian area (Martelli et al., 2008), the C isotope composition could be more positive. In this case, the mantle contribution is probably underestimated. In terms of geogenic carbon degassing, the best studied and most exhaling area is the SAAVA, which releases 104,090 t/a of CO2 and 20.26 t/a of CH4. Continental Greece on the contrary, is much less studied but may release CO2 in the same order of magnitude in its eastern-central and northern part. The western and south-western parts of Greece are conversely the main area of methane and higher hydrocarbon degassing. Methane output of Greece is much less constrained but the presence on its territory of one of the biggest thermogenic gas seepages of Europe releasing about 200 t/a of CH4 to the atmosphere underscores its potentially high contribution. Approximately 114,310 t/a of CO2 and 221 t/a of CH4 are released from the whole Hellenic territory (Daskalopoulou et al., submitted). This estimation though, should be considered minimum as there are processes and sources that have not been taken into consideration yet. More specifically, in the submarine manifestations found at greater depths, gases cannot reach the sea surface due to the dissolution process that takes place along the water column; this is especially true for CO2 that is more soluble in water respect to other gases (eg. Milos - Dando et al., 1995; Kolumbo - Rizzo et al., 2016 etc). Moreover, the geological and geodynamic regime can contribute in the formation of CO2 reservoirs. This is the case of Florina Basin (Pearce et al., 2004) where more than one CO2 reservoirs were created, with one of them being exploited by the company Air Liquide Greece. It is worth noting that this reservoir, found at a depth of approximately 300 m, produces 30,000 t/a of CO2 (Pearce et al., 2004). Moreover, in the same area, water is also used for water supply and irrigation purposes. This water though contains a great amount of dissolved CO2 great part of which is released to the atmosphere when the water is pumped to the surface. Another source that should be underscored is the quantification of geogenic CO2 dissolved in big karstic aquifers. Chiodini et al. (1999, 2000) demonstrated that the relatively high solubility of CO2 in water plays an important role in the quantification of carbon. This approach was proved for central Italy and it might be the case for continental Greece due to the similar geodynamic history. Finally, in ophiolitic sequences where serpentinization takes place, if and when the conditions are adequate (i.e. presence of effective catalysts – Etiope and Ionescu, 2015) an abiogenic origin for CH4 seems to be favored even at low temperatures. Ophiolitic sequences crop out widely in Greece along two N-S trending belts, whilst more hyperalkaline springs or dry seeps may be present. However, their flux in generally is very low and therefore their contribution to the total natural CH4 output has probably to be considered negligible.
    Description: Published
    Description: Athens, Greece
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Keywords: geogenic degassing ; carbon dioxide ; methane ; 05. General
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Extended abstract
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  • 7
    Publication Date: 2020-07-13
    Description: A multidisciplinary field campaign was carried out at Nisyros Island (Greece). Hydrothermal gases were sampled and analysed, and CH4 and CO2 fluxes from the soils were measured with the accumulation chamber method. The sampling area (Lakki plain) covers an area of about 0.08 km2, and includes the main fumarolic areas of Kaminakia, Stefanos, Ramos, Lofos and Phlegeton. Flux values measured at 130 sites range from −3.4 to 1420 mg m−2 d−1 for CH4 and from 0.1 to 383 g m−2 d−1 for CO2. The fumarolic areas show very different CH4 degassing patterns, Kaminakia showing the highest CH4 output values (about 0.8 t a−1 from an area of about 30,000 m2) and Phlegeton the lowest (about 0.01 t a−1 from an area of about 2500 m2). The total output from the entire geothermal system of Nisyros should not exceed 2 t a−1. Previous indirect estimates of the CH4 output at Nisyros, based on soil CO2 output and CH4/CO2 ratios in fumarolic gases, were more than one order of magnitude higher. The present work further underscores the utmost importance of direct CH4 flux data because indirect methods totally disregard methanotrophic activity within the soil. Ten soil samples were collected for CH4 consumption experiments and for metagenomic analysis. Seven of the soil samples showed small but significant CH4 consumption (up to 39.7 ng g−1 h−1) and were positive for the methanotrophs-specific gene (pmoA) confirming microbial CH4 oxidation in the soil, notwithstanding the harsh environmental conditions (high temperature and H2S concentrations and low pH).
    Description: Published
    Description: 119546
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Methanotrophy ; Soil degassing ; Hydrothermal systems ; Methane output ; Greenhouse gases ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 8
    Publication Date: 2020-07-13
    Description: Twenty gas samples have been collected from the natural gas manifestations of Milos Island, the majority of which is found underwater along its coast. Furthermore, three anomalous degassing fumarolic areas (Kalamos, Paleochori and Adamas) have been recognized on-land. Almost all the gases are CO2-dominated with CO2 ranging from 88 to 99% vol for the samples taken underwater, while the on-land manifestations show a wider range (15–98%) due to air contamination. Methane reaches up to 1.0% vol, H2 up to 3.2% vol and H2S up to 3.5% vol indicating a hydrothermal origin of the gases. The isotope composition of He points out to mantle contributions up to 45%, while the C-isotope composition of CO2 (from−1.9 to +1.3‰vs. V-PDB with most of the values around −0.5‰) suggests a prevailing limestone origin. Isotope composition of CH4, ranging from−18.4 to−5.0‰vs. VPDB for C and from−295 to+7‰vs. V-SMOWfor H, points to a geothermal origin with sometimes evident secondary oxidation processes. Additionally, CO2-flux measurements showed high values in the three fumarolic areas (up to 1100, 1500 and 8000 g/m2/d at Kalamos, Paleochori and Adamas respectively) with the highest CO2-flux values (up to about 23,000 g/m2/d) being measured in the sea at Kanavas with a floating chamber. The south-western part of the island was covered with a lower density prospection revealing only few anomalous CO2 flux values (up to 650 g/m2/d). The total output of the island (30.5 t/d) is typical of quiescent closed-conduit volcanoes and comparable to the other volcanic/geothermal systems of the south Aegean active volcanic arc (Nisyros, Kos, Nea Kameni, Methana and Sousaki).
    Description: Published
    Description: 13-22
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Keywords: Hydrothermal gases ; Stable isotopes ; Geogenic degassing ; Carbon dioxide ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 9
    Publication Date: 2020-07-13
    Description: Greece is a region characterised by intense geodynamic activity that favours the circulation of hydrothermal fluids in the crust transporting volatiles from either the deep crust or the mantle to the surface. Elevated heat flow values are detectable at Sperchios Basin and North Euboea (central Greece), two areas defined by a system of deeply rooted extensional faults and Quaternary volcanic activity. This setting contributed to the formation of numerous hydrothermal systems, which are mostly expressed as CO2-rich thermal springs with intense bubbling. The CO2 output from six bubbling pools has been determined by flux measurements with the use of the floating chamber method. The highest bubbling CO2 output has been found at Thermopyles and Psoroneria (0.6 and 0.84 t/d, respectively), where the outgoing channels have an elevated flow (〉250 l/s) of gas-charged water (〉15 mmol/l of CO2). Although no bubbling is noticed along the stream, the CO2 content decreases by an order of magnitude after few hundreds of metres, indicating an intense degassing from the water. Taking into account the water flow and the amount of CO2 lost to the atmosphere, the CO2 output of the outgoing channels is quantified in 12.5 t/d for Thermopyles and 9.23 t/d for Psoroneria. Output estimation has also been made for the other springs of the area. The diffuse CO2 release from the outgoing channels has always been higher respect to that of the visible bubbling, suggesting that most of the degassing is “hidden”. Furthermore, the loss of CO2 from the water has determined a shift in dissolved carbonate species as demonstrated by the pH increase along the channel that led eventually to an oversaturation in carbonate minerals and therefore travertine deposition. The total CO2 output to the atmosphere of the study area is estimated at ~27 t/d, with the major contribution deriving from the degassing along the outflow channels of the thermal springs. Such output is comparable to that of the single active volcanic systems along the South Aegean Active Volcanic Arc and highlights the importance of “hidden” degassing along CO2-oversaturated streams.
    Description: Published
    Description: 104660
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: C-cycle ; degassing sources ; stream outgassing ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 10
    Publication Date: 2018-04-05
    Description: Vulcano, the southernmost island of the Aeolian archipelago (Italy), is presently characterized by active fumarolic fields located along the rim of La Fossa cone and the shoreline of the Baia di Levante beach, in the northern portion of the island.The Baia di Levante fumarolic vents are fed by a shallow hydrothermal aquifer heated by magmatic gases rising from the deep down, with a spatial distribution strongly affected by the local fracture network. These fractures are the expression of a deformation field, dominated by a northward motion to Lipari, abruptly decaying to the Vulcanello peninsula, immediately northward of the Baia di Levante beach. Variable rates of fluid transfer to the surface, following permeability changes affecting the fracture network are among the results of stress field variations over time which induce fluctuations in the pressure state of the hydrothermal system. Under these conditions, increments in hydrothermal gas flow, able to cause an increase of gas hazard, could be determined by a rearrangement of the shallow permeability distribution induced by changes in the deformation field. In this case not associated to any variation in the volcanic activity state. Since 2009 an huge gas flow increment has been noticed in some undersea vents of the Baia di Levante area, leading to increase of gas hazard in their immediate surroundings. On the contrary, the acquired data from the INGV volcanic surveillance program didn’t suggest any correlated increase of the magmatic fluid component in the degassing activity.In July 2015, we carried out multi-parametric geochemical surveys in this area, based on direct (thermocouple) and indirect (thermal infrared camera and pyrometer) soil temperature, soil CO2 flux, atmospheric concentration of CO2 and H2S measurements at low elevation (one meter a.s.l.). The chemical and isotopic composition of low temperature fumarole gases was determined too.The comparison of the new data with previous surveys carried out in the same area, and the general information from the INGV monitoring program exclude a possible renewal of volcanic activity as the source for the observed anomalies.The most reliable cause for the observed localized gas flow anomalies should therefore be referred to a rearrangement of the local shallow permeability field driven by geodynamic stress variations. The differential subsidence rate acting in the Baia di Levante area, as resulting from the geodetic data from literature, could be accounted as the engine able to close and open fractures, modifying the permeability distribution and, finally, conveying major amount of gases in restricted areas where an increased gas hazard is observed.
    Description: Published
    Description: Vienna, Austria
    Description: 4V. Dinamica dei processi pre-eruttivi
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: 2SR. VULCANI - Servizi e ricerca per la Società
    Keywords: Carbon dioxide ; Hydrogen sulfide ; Hydrothermal release ; Gas hazard ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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