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  • 1
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    PANGAEA
    In:  Supplement to: Hurley, Sarah J; Close, Hilary G; Elling, Felix J; Jasper, C E; Gospodinova, K; McNichol, Ann P; Pearson, Ann (2019): CO2-dependent carbon isotope fractionation in Archaea, Part II: The marine water column. Geochimica et Cosmochimica Acta, 261, 383-395, https://doi.org/10.1016/j.gca.2019.06.043
    Publication Date: 2023-02-18
    Description: Stable carbon isotope ratios of archaeal glycerol dibiphytanyl glycerol tetraether (GDGT) lipids have been proposed as a proxy to infer past changes in the carbon isotope composition (δ13C) of dissolved inorganic carbon (DIC). The premise for reconstructing paleo-δ13CDIC from GDGTs is based on observations of relatively constant δ13CGDGT values in recent depositional environments. Marine Thaumarchaeota, thought to be the dominant source of GDGTs to marine sediments, fix inorganic carbon using the 3-hydroxypropionate/4-hydroxybutyrate (3HP/4HB) pathway, which is specific to HCO3- as the substrate. Bicarbonate-dependent autotrophy has been the basis for predicting that the stable carbon isotopic composition of GDGTs (δ13CGDGT) should vary in parallel with water column δ13CDIC values, because HCO3- is by far the dominant fraction of DIC in modern seawater. However, this relationship has never been systematically tested. Here we examine the carbon isotopic composition of GDGTs from four water column profiles in the Southwest and Equatorial Atlantic Ocean. Values of δ13CGDGT increase with depth in the water column, in contrast to the characteristic decrease in δ13CDIC values. These divergent trends imply a decrease in the observed total biosynthetic isotope effect (𝜀Ar) with depth, i.e., the offset between δ13CDIC and δ13CGDGT is not constant. Instead, we find that values of 𝜀Ar specifically correlate with oceanographic variables associated with extent of organic remineralization, decreasing as CO2 concentration increases. This observed relationship is consistent in both magnitude and direction with the results of an isotope flux-balance model for Thaumarchaeota that suggests 𝜀Ar should be sensitive to growth rate (µ) and CO2 availability under conditions of atmospheric pCO2 〈 4 times the pre-anthropogenic Holocene level. Further tests of the sensitivity of 𝜀Ar to µ and CO2 in the modern marine environment will be essential to exploring the potential for a new, archaeal lipid-derived pCO2 paleobarometer.
    Keywords: compound-specific carbon isotopic composition; crenarchaeol; GDGT
    Type: Dataset
    Format: application/zip, 3 datasets
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2023-02-18
    Keywords: 20130328_2309_001; 20130329_1202_001; 20130329_1905_001; 20130405_2046_001; 20130417_2317_001; 20130504_0334_001; compound-specific carbon isotopic composition; crenarchaeol; Date/time end; Date/time start; DEPTH, sediment/rock; Event label; GDGT; KN210-04; Knorr; McLane Pump; McLP; Number; Sample code/label; Station label; δ13C, dissolved inorganic carbon; δ13C, dissolved inorganic carbon, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 287 data points
    Location Call Number Limitation Availability
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  • 3
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    PANGAEA
    In:  Supplement to: Hurley, Sarah J; Lipp, Julius S; Close, Hilary G; Hinrichs, Kai-Uwe; Pearson, Ann (2018): Distribution and export of isoprenoid tetraether lipids in suspended particulate matter from the water column of the Western Atlantic Ocean. Organic Geochemistry, 116, 90-102, https://doi.org/10.1016/j.orggeochem.2017.11.010
    Publication Date: 2023-12-18
    Description: The TEX86 paleotemperature proxy is based on the distribution of archaeal glycerol dibiphytanyl glycerol tetraether (GDGT) lipids preserved in marine sediments, yet both the influence of different physiological factors on the structural distribution of GDGTs and the mechanism(s) by which GDGTs is(are) exported to marine sediments remain(s) unresolved. We investigated the abundance and structural distribution of GDGTs in the South-west and Equatorial Atlantic Ocean in four water column profiles spanning 48 degrees of latitude. The depth distribution was consistent with production by ammonia-oxidizing Thaumarchaeota; maximum GDGT concentration occurred at the base of the NO2**- maximum, core GDGTs dominated the structural distribution in surface waters above the NO2**- maximum, and intact polar GDGTs - potentially indicating live cells - were more abundant below the NO2**- maximum. Between 0 and1000 m, 〉 98% of the integrated GDGT inventory was present in waters at and below the NO2**- maximum. Depth profiles of TEX86 temperature values displayed local minima at the NO2**- maximum, while the ratio of GDGT-2:GDGT-3 increased with depth. A model based on the results predicts an average depth of origin for GDGTs exported to sediments between ca. 80-250?m. In the model, exported TEX86 values are remarkably insensitive to change in the average depth of origin of GDGTs. However, TEX86 values exported from the water column appear to reflect euphotic zone productivity, possibly due to the correlative intensity of organic matter remineralization providing substrates for ammonia oxidation. Predicting the influence of these regional controls on sedimentary TEX86 records requires a better understanding of the interaction between GDGT production, particle dynamics, and the depth of origin for exported organic matter.
    Keywords: 15; 2; 20130327.2206.001; 20130328.1437.001; 20130329.0154.001; 20130329.2139.001; 20130406.0124.001; 20130406.2328.001; 20130407.1335.001; 20130418.0526.001; 20130418.2200.001; 20130419.1229.001; 20130420.0338.001; 20130503.1831.001; 20130504.0746.001; 20130506.0410.001; 20130506.1639.001; 23; 7; Calculated from TEX86H (Kim et al., 2012); Core acyclic glycerol dialkyl glycerol tetraether; Core crenarchaeol; Core crenarchaeol regio-isomer; Core dicyclic glycerol dialkyl glycerol tetraether; Core monocyclic glycerol dialkyl glycerol tetraether; Core tetracyclic glycerol dialkyl glycerol tetraether; Core tricyclic glycerol dialkyl glycerol tetraether; Date/time end; Date/time start; DEPTH, water; Diglycosyl acyclic glycerol dialkyl glycerol tetraether; Diglycosyl crenarchaeol; Diglycosyl crenarchaeol regio-isomer; Diglycosyl dicyclic glycerol dialkyl glycerol tetraether; Diglycosyl glycerol dialkyl glycerol tetraethers, total; Diglycosyl monocyclic glycerol dialkyl glycerol tetraether; Diglycosyl tetracyclic glycerol dialkyl glycerol tetraether; Diglycosyl tricyclic glycerol dialkyl glycerol tetraether; Event label; Filter; Glycerol dialkyl glycerol tetraethers, total; Hexosephosphohexose acyclic glycerol dialkyl glycerol tetraether; Hexosephosphohexose crenarchaeol; Hexosephosphohexose crenarchaeol regio-isomer; Hexosephosphohexose dicyclic glycerol dialkyl glycerol tetraether; Hexosephosphohexose glycerol dialkyl glycerol tetraethers, total; Hexosephosphohexose monocyclic glycerol dialkyl glycerol tetraether; Hexosephosphohexose tetracyclic glycerol dialkyl glycerol tetraether; Hexosephosphohexose tricyclic glycerol dialkyl glycerol tetraether; KN210-04; Knorr; Latitude of event; Longitude of event; McLane Pump; McLP; Monoglycosyl acyclic glycerol dialkyl glycerol tetraether; Monoglycosyl crenarchaeol; Monoglycosyl crenarchaeol regio-isomer; Monoglycosyl dicyclic glycerol dialkyl glycerol tetraether; Monoglycosyl glycerol dialkyl glycerol tetraethers, total; Monoglycosyl monocyclic glycerol dialkyl glycerol tetraether; Monoglycosyl tetracyclic glycerol dialkyl glycerol tetraether; Monoglycosyl tricyclic glycerol dialkyl glycerol tetraether; Ratio; Sample code/label; Station label; Sum core glycerol dialkyl glycerol tetraethers; Temperature, calculated; Tetraether index of 86 carbon atoms of core glycerol dialkyl glycerol tetraethers; Tetraether index of 86 carbon atoms of diglycosyl glycerol dialkyl glycerol tetraethers; Tetraether index of 86 carbon atoms of glycerol dialkyl glycerol tetraethers; Tetraether index of 86 carbon atoms of hexosephosphohexose glycerol dialkyl glycerol tetraethers; Tetraether index of 86 carbon atoms of monoglycosyl glycerol dialkyl glycerol tetraethers
    Type: Dataset
    Format: text/tab-separated-values, 4751 data points
    Location Call Number Limitation Availability
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  • 4
    Publication Date: 2024-04-20
    Description: Marine particulate organic carbon-13 stable isotope ratios (δ13C-POC) provide additional constraints and insights into the cycling of carbon from dissolved pools to marine ecosystems including anthropogenic contributions. For such purposes, a robust spatio-temporal coverage of δ13C-POC observations is essential. In this data product, we collected and merged two large data compilations (Close and Henderson, 2020; St John Glew et al., 2021) into our previous version (Verwega et al., 2021) to provide the largest available marine δ13C-POC data set. Additionally, we have incorporated more meta information including if the samples were acidified before measuring the isotope ratio. The data set consists of 6952 data points covering the global ocean from year 1966 to 2019. We provide the data in the following two formats for best application on specific research purposes: (1) A spreadsheet file including all collected individual data and meta-information; (2) Network Common Data Form (NetCDF) files that only include acidified samples (6633 total data points) interpolated onto a global ocean grid (1°x1° horizontal resolution, 33 vertical levels based on World Ocean Atlas 2009) for each month individually and all months combined, with each file covering the temporal range from year 1966 to 2019.
    Keywords: Binary Object; Binary Object (File Size); Binary Object (Media Type); carbon isotope ratio (δ13C); Description; global; marine; ocean; Particulate organic carbon
    Type: Dataset
    Format: text/tab-separated-values, 28 data points
    Location Call Number Limitation Availability
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  • 5
    Publication Date: 2023-02-08
    Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.
    Type: Article , PeerReviewed
    Format: text
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  • 6
    Publication Date: 2020-07-01
    Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 7
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kharbush, J. J., Close, H. G., Van Mooy, B. A. S., Arnosti, C., Smittenberg, R. H., Le Moigne, F. A. C., Mollenhauer, G., Scholz-Boettcher, B., Obreht, I., Koch, B. P., Becker, K. W., Iversen, M. H., & Mohr, W. Particulate organic carbon deconstructed: molecular and chemical composition of particulate organic carbon in the ocean. Frontiers in Marine Science, 7, (2020): 518, doi:10.3389/fmars.2020.00518.
    Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.
    Description: We thank the Hanse Institute for Advanced Studies (HWK) and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) project number 422798570, as well as the Geochemical Society, for funding which made the workshop possible. CA was additionally supported by OCE-1736772. BV was additionally supported by NSF OCE-1756254.
    Keywords: Marine particles ; Water column ; Phytoplankton ; Marine microbes ; Structural analysis ; Organic matter characterization ; Biomarkers
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-09-30
    Description: Dataset: Particle d15N values of amino acids
    Description: This dataset includes d15N values of individual amino acids from size-fractionated and sinking particles collected on the EXPORTS cruises (SR1812 on R/V Sally Ride and RR1813 R/V Roger Revelle) in August to September 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/880041
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1830016
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Limitation Availability
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  • 9
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-09-30
    Description: Dataset: Particle bulk d15N values
    Description: This dataset includes d15N values of bulk nitrogen from size-fractionated and sinking particles collected on the EXPORTS cruises (SR1812 on R/V Sally Ride and RR1813 R/V Roger Revelle) in August to September 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/880376
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1830016
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Limitation Availability
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  • 10
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-09-20
    Description: Dataset: Size fractionated zooplankton, C:N, d13C, and d15N from JC214
    Description: This dataset includes size fractionated zooplankton, C:N, d13C, and d15N from EXPORTS cruise JC214 on RRS James Cook from May to June 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/880448
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2124416, NSF Division of Ocean Sciences (NSF OCE) OCE-2124415
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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