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  • 1
    Keywords: Geomicrobiology ; Aufsatzsammlung ; Umweltwissenschaften ; Mikrobiologie ; Biogeochemie ; Probenvorbereitung ; Methode ; Mikroorganismus ; Geomikrobiologie ; Umweltgeochemie ; Chemische Analyse ; Umweltanalytik ; Mikrobiologische Analyse
    Description / Table of Contents: Machine generated contents note: Foreword Kurt O. Konhauser; Part I. Standard Techniques in Geomicrobiology: 1. General geochemistry and microbiology techniques Sarrah Dunham-Cheatham and Yaqi You; Part II. Advanced Analytical Instrumentation: 2. The application of isothermal titration calorimetry for investigating proton and metal interactions on microbial surfaces Drew Gorman-Lewis; 3. Potentiometric titrations to characterize the reactivity of geomicrobial surfaces Daniel S. Alessi, Shannon L. Flynn, Md. Samrat Alam, Leslie J. Robbins and Kurt O. Konhauser; 4. Use of multi-collector ICP-MS for studying biogeochemical metal cycling Kai Liu, Lingling Wu and Sherry L. Schiff; Part III. Imaging Techniques: 5. Scanning probe microscopy Adam F. Wallace; 6. Applications of scanning electron microscopy in geomicrobiology Jeremiah Shuster, Gordon Southam and Frank Reith; 7. Applications of transmission electron microscopy in geomicrobiology Jeremiah Shuster, Gordon Southam and Frank Reith; 8. Whole cell identification of microorganisms in their natural environment with fluorescence in situ hybridization (FISH) Natuschka M. Lee; Part IV. Spectroscopy: 9. X-ray diffraction techniques Daniel K. Unruh and Tori Z. Forbes; 10. Application of synchrotron X-ray absorption spectroscopy and microscopy techniques to the study of biogeochemical processes Maxim I. Boyanov and Kenneth M. Kemner; 11. Bacterial surfaces in geochemistry - how can X-ray photoelectron spectroscopy help? Madeleine Ramstedt, Laura Leone and Andrey Shchukarev; 12. Applications of Fourier-transform infrared spectroscopy in geomicrobiology Janice P. L. Kenney and Andras Gorzsas; 13. Mossbauer spectroscopy James M. Byrne and Andreas Kappler; Part V. Microbiological Techniques: 14. Lipid biomarkers in geomicrobiology: analytical techniques and applications Jiasong Fang, Shamik Dasgupta, Li Zhang and Weiqiang Zhao; 15. Phylogenetic techniques in geomicrobiology Denise M. Akob, Adam C. Mumford, Darren S. Dunlap and Amisha T. Poret-Peterson.
    Type of Medium: Book
    Pages: xii, 416 Seiten , Illustrationen, Diagramme
    ISBN: 9781107070332
    DDC: 579
    RVK:
    Language: English
    Note: Includes bibliographical references and index
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  • 2
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Earth-Science Reviews 163 (2016): 323-348, doi:10.1016/j.earscirev.2016.10.013.
    Description: Life requires a wide variety of bioessential trace elements to act as structural components and reactive centers in metalloenzymes. These requirements differ between organisms and have evolved over geological time, likely guided in some part by environmental conditions. Until recently, most of what was understood regarding trace element concentrations in the Precambrian oceans was inferred by extrapolation, geochemical modeling, and/or genomic studies. However, in the past decade, the increasing availability of trace element and isotopic data for sedimentary rocks of all ages have yielded new, and potentially more direct, insights into secular changes in seawater composition – and ultimately the evolution of the marine biosphere. Compiled records of many bioessential trace elements (including Ni, Mo, P, Zn, Co, Cr, Se, and I) provide new insight into how trace element abundance in Earth’s ancient oceans may have been linked to biological evolution. Several of these trace elements display redox-sensitive behavior, while others are redox-sensitive but not bioessential (e.g., Cr, U). Their temporal trends in sedimentary archives provide useful constraints on changes in atmosphere-ocean redox conditions that are linked to biological evolution, for example, the activity of oxygen-producing, photosynthetic cyanobacteria. In this review, we summarize available Precambrian trace element proxy data, and discuss how temporal trends in the seawater concentrations of specific trace elements may be linked to the evolution of both simple and complex life. We also examine several biologically relevant and/or redox-sensitive trace elements that have yet to be fully examined in the sedimentary rock record (e.g., Cu, Cd, W) and suggest several directions for future studies.
    Description: LJR gratefully acknowledges the support of a Vanier Canada Graduate Scholarship. Discovery Grants from the Natural Sciences and Engineering Research Council of Canada (NSERC) to CAP, BK, DSA, SAC, and KOK supported this work. This material is based upon work supported by the National Aeronautics and Space Administration through the NASA Astrobiology Institute under Cooperative Agreement No. NNA15BB03A issued through the Science Mission Directorate. NJP receives support from the Alternative Earths NASA Astrobiology Institute. Funding from the NASA Astrobiology Institute, and the NSF FESD and ELT programs to TWL, and the Region of Brittany and LabexMER funding to SVL are also gratefully acknowledged. AB thanks the Society of Independent Thinkers.
    Keywords: Iron formations ; Black shales ; Eukaryotes ; Prokaryotes ; Evolution ; Trace elements ; Biolimitation ; Precambrian
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 3
    Publication Date: 2018-12-17
    Description: The Boolgeeda Iron Formation and overlying Turee Creek Group, Hamersley Basin, Western Australia, represent a conformable succession of sediment deposited between 2.45 and 2.22 Ga. This interval of geologic history is of significant interest because it spans the Great Oxidation Event (GOE), when oxygen first accumulated in Earth’s atmosphere. Here we present geochemical and petrographic data from the uppermost 45 m of the Boolgeeda Iron Formation and an additional 30 m of the overlying Kungarra Formation mudstones, as sampled from the Turee Creek Drilling Project 1 drill core (TCDP1). This core captures the termination of BIF deposition in the Hamersley Basin and coincides with a global decline in BIF deposition in the Paleoproterozoic. We provide a continuous, high resolution chemostratigraphic dataset of major and trace element concentrations, as well as Fe speciation data, to assess the relationship between the rise of atmospheric oxygen and the subsequent decline in BIF deposition. We also highlight the interplay between local and global controls on the preservation of redox signatures, including the rise and fall of local base-level, input of weathered continental material, influx of reduced sulfur species associated with the continental weathering, and global increases in atmospheric oxygen. We interpret Boolgeeda deposition to have taken place under shallow water, oxic conditions overlying anoxic ferruginous deep water. Intermittent periods of oxidative weathering led to influxes of redox sensitive trace elements from land as continental sulfide minerals were weathered. This also led to the temporary disappearance of MIF-S, but O2 remained below the threshold capable of completely eliminating S isotope signatures associated with the MIF-S recycling.
    Type: Article , PeerReviewed
    Format: text
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  • 4
    Publication Date: 2022-01-31
    Description: Highlights • The adsorption of Co, Ni, Cu, and Zn to Synechococcus sp PCC 7002 was studied using a surface complexation modelling approach. • A surface complexation model was developed to determine the thermodynamic binding constants of Co, Ni, Cu, and Zn to Synechococcus. • The surface complexation model was able to accurately predict the competitive adsorptionof the four metals to Synechococcus. • Synechococcus could have been an important exit channel for trace elements into ancient sediments such as BIF Marine bacterial plankton play a key role in elemental cycling through their ability to bind, assimilate, metabolize, and modify the redox state of trace metals in seawater. Of those processes, arguably the least studied are the mechanisms underpinning trace metal adsorption to planktonic marine bacteria, despite a plethora of literature pertaining to terrestrial species. Recently, Liu et al. (2015) demonstrated that the marine cyanobacterium Synechococcus sp. PCC 7002 has the capacity to remove appreciable amounts of Cd2+, a proxy for other divalent cations, from seawater by adsorption. In this study, we build on that work and employ a surface complexation modelling (SCM) approach using titration and pH adsorption edge experiments to calculate the thermodynamic binding constants of four bioessential transition metals (Co, Ni, Cu, Zn) to Synechococcus in simulated seawater. Based on the titration results, the major functional groups involved in metal binding were carboxyl groups with a pKa of 5.59 and phosphoryl groups with a pKa of 7.61. Metal adsorption experiments indicate that Synechococcus can bind considerable concentrations of Zn, Cu, Ni, and Co at pH 8. When all four metals are simultaneously added to solution, the same adsorption pattern of Zn 〉 Cu 〉 Ni 〉 Co is maintained, and accurately predicted by the SCM. Based on average marine cell densities and turnover rates of Synechococcus cells in the photic zone, we calculate that Synechococcus, in the absence of competing ligands such as dissolved organic matter (DOM), has the theoretical capacity to remove nearly all of the free metal cations from seawater. These observations highlight the surface reactivity of marine cyanobacteria as a potentially important vector for the transfer of dissolved metals from the photic zone to deeper waters or the seafloor in modernoceans, but they also have implications for the Precambrian oceans as sinking cyanobacteria could have acted as an exit channel for trace elements into ancient sediments including banded iron formations (BIF).
    Type: Article , PeerReviewed
    Format: text
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  • 5
    Publication Date: 2024-02-07
    Description: Highlights • The adsorption of Cd to Synechocystis sp. PCC 6803 was investigated at both marine and freshwater ionic strength. • The thermodynamic binding constants of Cd to Synechocystis were calculated using a surface complexation modeling approach. • Synechocystis and other planktonic cyanobacteria may be an important vector of trace metals transport to marine settings. Cyanobacteria are abundant in nearly every surface environment on Earth. Understanding their chemical reactivity and metal binding capacity with varying ionic strength (IS) is paramount to understanding trace metal cycling in natural environments. We conducted an investigation on the cell surface reactivity of the freshwater cyanobacterium Synechocystis sp. PCC 6803 at freshwater (0.01 M NaCl) and marine (0.56 M NaCl) IS. Potentiometric titration data were used to develop a multiple discrete site, non-electrostatic surface complexation model (SCM), and corresponding cell surface functional group identities were verified using attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy. Synechocystis cells were best modeled in FITEQL 4.0 using a non-electrostatic 2-site protonation model. Cadmium (Cd) adsorption experiments paired with SCM was utilized to calculate the binding constants of Cd. Synechocystis surface functional groups demonstrated a stronger affinity for Cd across the entire pH range studied (3–9) at freshwater IS, with the greatest difference at circumneutral pH (6–8) where Cd adsorption in freshwater IS was 60% greater than at marine IS. These data combined with the ubiquitous distribution of Synechocystis in freshwater and brackish environments suggest that these organisms could play an important role in trace metal cycling in environments with large salinity gradients, such as estuaries and deltas, and could act as a transport mechanism for trace metals from terrestrial to marine settings.
    Type: Article , PeerReviewed
    Format: text
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