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  • 1
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    Navigating taxonomic complexity: a use-case report on FAIR scientific name-matching service usage in ENVRI Research infrastructures (2024)
    Pensoft Publishers
    In:  Research Ideas and Outcomes vol. 10 no. e121871
    Details
    Publication Date: 2024-04-12
    Description: This paper presents a use-case conducted within the ENVRI FAIR project, examining challenges and opportunities in deploying FAIR-aligned (ensuring Findability, Accessibility, Interoperability and Reusability) scientific name-matching services across Environmental Research Infrastructures (RIs). Six services were tested using various name variations, revealing inconsistencies in match types, status reporting and handling of canonical forms and typos. These diversities pose challenges for RI data pipelines and interoperability. The paper underscores the importance of standardised tools, enhanced communication, training, collaboration and shared resources. Addressing these needs can facilitate more effective FAIR implementation within the ENVRI community and biodiversity research. This, in turn, will empower RIs to seamlessly integrate and leverage scientific names, unlocking the full potential of their data for research and policy implementation.
    Keywords: scientific names ; taxonomy ; biodiversity ; FAIR ; ENVRI
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 2
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    Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs\non banana (2008)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 20 no. 1, pp. 19-37
    Details
    Publication Date: 2024-01-12
    Description: Three species of Mycosphaerella, namely M. eumusae, M. fijiensis, and M. musicola are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is known about these taxa, and for the majority of these species no culture or DNA is available for study. In the present study, we collected a global set of Mycosphaerella strains from banana, and compared them by means of morphology and a multi-gene nucleotide sequence data set. The phylogeny inferred from the ITS region and the combined data set containing partial gene sequences of the actin gene, the small subunit mitochondrial ribosomal DNA and the histone H3 gene revealed a rich diversity of Mycosphaerella species on Musa. Integration of morphological and molecular data sets confirmed more than 20 species of Mycosphaerella (incl. anamorphs) to occur on banana. This study reconfirmed the previously described presence of Cercospora apii, M. citri and M. thailandica, and also identified Mycosphaerella communis, M. lateralis and Passalora loranthi on this host. Moreover, eight new species identified from Musa are described, namely Dissoconium musae, Mycosphaerella mozambica, Pseudocercospora assamensis, P. indonesiana, P. longispora, Stenella musae, S. musicola, and S. queenslandica.
    Keywords: Mycosphaerella ; phylogeny ; Sigatoka disease complex ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 3
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    Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification (2021)
    Pensoft Publishers
    In:  ZooKeys vol. 1010, pp. 1-95
    Details
    Publication Date: 2024-01-12
    Description: New data on 52 non-indigenous mollusks in the Eastern Mediterranean Sea is reported. Fossarus sp. (aff. aptus sensu Blatterer 2019), Coriophora lessepsiana Albano, Bakker & Sabelli, sp. nov., Cerithiopsis sp. aff. pulvis, Joculator problematicus Albano & Steger, sp. nov., Cerithiopsis sp., Elachisina sp., Iravadia aff. elongata, Vitrinella aff. Vitrinella sp. 1 (sensu Blatterer 2019), Melanella orientalis, Parvioris aff. dilecta, Odostomia cf. dalli, Oscilla virginiae, Parthenina cossmanni, Parthenina typica, Pyrgulina craticulata, Turbonilla funiculata, Cylichna collyra, Musculus coenobitus, Musculus aff. viridulus, Chavania erythraea, Scintilla cf. violescens, Iacra seychellarum and Corbula erythraeensis are new records for the Mediterranean. An unidentified gastropod, Skeneidae indet., Triphora sp., Hypermastus sp., Sticteulima sp., Vitreolina cf. philippi, Odostomia (s.l.) sp. 1, Henrya (?) sp., and Semelidae sp. are further potential new non-indigenous species although their status should be confirmed upon final taxonomic assessment. Additionally, the status of Dikoleps micalii, Hemiliostraca clandestina comb. nov. and H. athenamariae comb. nov. is changed to non-indigenous, range extensions for nine species and the occurrence of living individuals for species previously recorded from empty shells only are reported. Opimaphora blattereri Albano, Bakker & Sabelli, sp. nov. is described from the Red Sea for comparison with the morphologically similar C. lessepsiana Albano, Bakker & Sabelli, sp. nov. The taxonomic part is followed by a discussion on how intensive fieldwork and cooperation among institutions and individuals enabled such a massive report, and how the poor taxonomic knowledge of the Indo-Pacific fauna hampers non-indigenous species detection and identification. Finally, the hypothesis that the simultaneous analysis of quantitative benthic death assemblages can support the assignment of non-indigenous status to taxonomically undetermined species is discussed.
    Keywords: Animal Science and Zoology ; Ecology ; Evolution ; Behavior and Systematics ; Cerithiopsidae ; invasion biology ; Lessepsian invasion ; Mollusca ; new species ; Red Sea ; taxonomy ; Triphoridae
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 4
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    Taxonomy, ecology, and conservation status of Philippine Rafflesia\n(Rafflesiaceae) (2009)
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 54 no. 1/3, pp. 77-93
    Details
    Publication Date: 2024-01-12
    Description: The number of Rafflesia species (Rafflesiaceae) reported for the Philippines has grown explosively from two before 2002 to ten or eleven presently. We present an overview of the current knowledge of Philippine Rafflesia by providing a comprehensive account of all the recognized species with their taxonomy, distribution and ecology, plus a key and photographs to aid in identification. Their conservation status and that of the rain forest habitats they require is discussed.
    Keywords: Conservation ; ecology ; Philippines ; Rafflesia ; Rafflesiaceae ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 5
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    Native and non-native species of hard substrata in the Dutch Wadden Sea (2010)
    In:  Nederlandse Faunistische Mededelingen vol. 33, pp. 21-75
    Details
    Publication Date: 2024-01-12
    Description: Bij een inventarisatie van hard substraat in 83 locaties in de Nederlandse Waddenzee, in zoutgehaltes van 10-32 ppt, werden in juli/augustus 2009 in totaal 129 soorten planten en dieren waargenomen. Van deze soorten hadden er 29 een uitheemse of onbekende oorsprong. In aanvulling hierop werd een inventarisatie gemaakt van nog ongepubliceerde waarnemingen in de Waddenzee. Elf soorten en \xc3\xa9\xc3\xa9n ondersoort waren nog niet eerder geregistreerd in de Nederlandse Waddenzee. E\xc3\xa9n alg, Ceramiaceae sp., met onbekende oorsprong, is vermoedelijk een nieuwe soort voor Europa. E\xc3\xa9n zakpijpsoort, Molgula socialis, is nieuw voor Nederland. Deze soort is waarschijnlijk algemeen verspreid in Nederland en is mogelijk zelf inheems. In het\nverleden was hij vermoedelijk vaak foutief gedetermineerd als de invasieve Amerikaanse zakpijp Molgula manhattensis, die van Molgula socialis alleen onderscheiden kan worden aan de hand van anatomische details. De 11 nieuwe soorten (en \xc3\xa9\xc3\xa9n nieuwe ondersoort) verhogen het totaal aantal van in de Waddenzee geregistreerde soorten van uitheemse of onbekende afkomst tot 64. Het relatief hoge aantal nieuwe soorten voor de Waddenzee dat binnen drie weken veldwerk gevonden kon worden, lijkt gerelateerd te zijn aan het feit dat het biodiversiteitsonderzoek in de Waddenzee zich in het verleden nooit specifiek heeft gericht op hard substraat, zoals drijvende steigers in jachthavens. Verder valt niet uit te sluiten dat verschillende soorten zich pas recentelijk in de Nederlandse Waddenzee hebben gevestigd.
    Keywords: marine algae ; macrofauna ; Nederland ; Waddenzee ; hard substraat
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 6
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    Back to the roots: a reappraisal of Neocosmospora (2019)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 43 no. 1, pp. 90-185
    Details
    Publication Date: 2024-01-12
    Description: The genus Neocosmospora (Fusarium solani species complex) contains saprobes, plant endophytes \nand pathogens of major economic significance as well as opportunistic animal pathogens. Advances in biological \nand phylogenetic species recognition revealed a rich species diversity which has largely remained understudied. \nMost of the currently recognised species lack formal descriptions and Latin names, while the taxonomic utility of old \nnames is hampered by the lack of nomenclatural type specimens. Therefore, to stabilise the taxonomy and nomenclature of these important taxa, we examined type specimens and representative cultures of several old names by \nmeans of morphology and phylogenetic analyses based on rDNA (ITS and LSU), rpb2 and tef1 sequences. Sixtyeight species are accepted in Neocosmospora, 29 of them described herein as new; while 13 new combinations \nare made. Eleven additional phylogenetic species are recognized, but remain as yet undescribed. Lectotypes are \nproposed for eight species, seven species are epitypified and two species are neotypified. Notes on an additional \n17 doubtful or excluded taxa are provided.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Fusarium ; new taxa ; systematics ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 7
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    Diversity of Sporocadaceae (pestalotioid fungi) from Rosa in China (2022)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 49 no. 1, pp. 201-260
    Details
    Publication Date: 2024-03-20
    Description: Rosa (Rosaceae) is an important ornamental and medicinal plant genus worldwide, with several species being cultivated in China. Members of Sporocadaceae (pestalotioid fungi) are globally distributed and include endophytes, saprobes but also plant pathogens, infecting a broad range of host plants on which they can cause important plant diseases. Although several Sporocadaceae species were recorded to inhabit Rosa spp., the taxa occurring on Rosa remain largely unresolved. In this study, a total of 295 diseased samples were collected from branches, fruits, leaves and spines of eight Rosa species (R. chinensis, R. helenae, R. laevigata, R. multiflora, R. omeiensis, R. rugosa, R. spinosissima and R. xanthina) in Gansu, Henan, Hunan, Qinghai, Shaanxi Provinces and the Ningxia Autonomous Region of China. Subsequently 126 strains were obtained and identified based on comparisons of DNA sequence data. Based on these results 15 species residing in six genera of Sporocadaceae were delineated, including four known species (Pestalotiopsis chamaeropis, Pes. rhodomyrtus, Sporocadus sorbi and Spo. trimorphus) and 11 new species described here as Monochaetia rosarum, Neopestalotiopsis concentrica, N. subepidermalis, Pestalotiopsis tumida, Seimatosporium centrale, Seim. gracile, Seim. nonappendiculatum, Seim. parvum, Seiridium rosae, Sporocadus brevis, and Spo. spiniger. This study also represents the first report of Pes. chamaeropis, Pes. rhodomyrtus and Spo. sorbi on Rosa. The overall data revealed that Pestalotiopsis was the most prevalent genus, followed by Seimatosporium, while Pes. chamaeropis and Pes. rhodomyrtus were the two most prevalent species. Analysis of Sporocadaceae abundance on Rosa species and plant organs revealed that spines of R. chinensis had the highest species diversity.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Amphisphaeriales ; Ascomycota ; new taxa ; phylogeny ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 8
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    Generic hyper-diversity in Stachybotriaceae (2016)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 36, pp. 156-246
    Details
    Publication Date: 2024-03-06
    Description: The family Stachybotriaceae was recently introduced to include the genera Myrothecium, Peethambara and Stachybotrys. Members of this family include important plant and human pathogens, as well as several species used in industrial and commercial applications as biodegraders and biocontrol agents. However, the generic boundaries in Stachybotriaceae are still poorly defined, as type material and sequence data are not readily available for taxonomic studies. To address this issue, we performed multi-locus phylogenetic analyses using partial gene sequences of the 28S large subunit (LSU), the internal transcribed spacer regions and intervening 5.8S nrRNA (ITS), the RNA polymerase II second largest subunit (rpb2), calmodulin (cmdA), translation elongation factor 1-alpha (tef1) and \xce\xb2-tubulin (tub2) for all available type and authentic strains. Supported by morphological characters these data resolved 33 genera in the Stachybotriaceae. These included the nine already established genera Albosynnema, Alfaria, Didymostilbe, Myrothecium, Parasarcopodium, Peethambara, Septomyrothecium, Stachybotrys and Xepicula. At the same time the generic names Melanopsamma, Memnoniella and Virgatospora were resurrected. Phylogenetic inference further showed that both the genera Myrothecium and Stachybotrys are polyphyletic resulting in the introduction of 13 new genera with myrothecium-like morphology and eight new genera with stachybotrys-like morphology.
    Keywords: biodegraders ; generic concept ; human and plant pathogens ; indoor mycobiota ; multi-gene phylogeny ; species concept ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 9
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    Living planet report: zoute en zilte natuur in Nederland (2017)
    Wereld Natuur Fonds, Zeist
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    Publication Date: 2024-01-12
    Keywords: natuur ; Nederland ; zeespiegel
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/other
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  • 10
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    Pectinoidea (Mollusca: Bivalvia) from Iceland (2009)
    In:  Marine Biology Research vol. 5, pp. 207-243
    Details
    Publication Date: 2024-01-12
    Description: The Icelandic pectinoid fauna is reviewed, based on material from the benthic survey programme BIOICE and 17 species are recorded. Similipecten oskarssoni is proposed as a replacement name for Pecten groenlandicus var. minor Locard, 1898 (Propeamussiidae), which is considered a valid species. Lectotypes are designated for Pecten groenlandicus var. minor and Pecten frigidus Jensen, 1904 (Pectinidae). Cyclopecten ambiannulatus Schein, 1989, Parvamussium propinquum (Smith, 1885), Catillopecten eucymatus (Dall, 1898), and Aequipecten opercularis (Linnaeus, 1758) were previously not known from the Icelandic fauna. All species are figured and described and distinguishing characters are discussed. The distribution in Scandinavian and North Atlantic waters is revised based on the collections in SMNH. The low frequency of juvenile specimens of A. opercularis, Mimachlamys varia and Pecten maximus may indicate that Scandinavian populations are the result of very occasional recruitment.
    Keywords: Pectinoidea ; taxonomy ; new species ; North Atlantic ; Iceland ; BIOICE
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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