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  • Articles  (33)
  • Elsevier  (29)
  • Pensoft Publishers  (4)
  • Dessau-Roßlau : Umweltbundesamt
  • 2020-2024  (33)
  • 1
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    Developing expert scientific consensus on the environmental and societal effects of marine artificial structures prior to decommissioning (2024)
    Elsevier
    In:  EPIC3Journal of Environmental Management, Elsevier, 352, pp. 119897-119897, ISSN: 0301-4797
    Details
    Publication Date: 2024-01-31
    Description: Thousands of artificial (‘human-made’) structures are present in the marine environment, many at or approaching end-of-life and requiring urgent decisions regarding their decommissioning. No consensus has been reached on which decommissioning option(s) result in optimal environmental and societal outcomes, in part, owing to a paucity of evidence from real-world decommissioning case studies. To address this significant challenge, we asked a worldwide panel of scientists to provide their expert opinion. They were asked to identify and characterise the ecosystem effects of artificial structures in the sea, their causes and consequences, and to identify which, if any, should be retained following decommissioning. Experts considered that most of the pressures driving ecological and societal effects from marine artificial structures (MAS) were of medium severity, occur frequently, and are dependent on spatial scale with local-scale effects of greater magnitude than regional effects. The duration of many effects following decommissioning were considered to be relatively short, in the order of days. Overall, environmental effects of structures were considered marginally undesirable, while societal effects marginally desirable. Experts therefore indicated that any decision to leave MAS in place at end-of-life to be more beneficial to society than the natural environment. However, some individual environmental effects were considered desirable and worthy of retention, especially in certain geographic locations, where structures can support improved trophic linkages, increases in tourism, habitat provision, and population size, and provide stability in population dynamics. The expert analysis consensus that the effects of MAS are both negative and positive for the environment and society, gives no strong support for policy change whether removal or retention is favoured until further empirical evidence is available to justify change to the status quo. The combination of desirable and undesirable effects associated with MAS present a significant challenge for policy- and decision-makers in their justification to implement decommissioning options. Decisions may need to be decided on a case-by-case basis accounting for the trade-off in costs and benefits at a local level.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
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    Testate amoebae (Protozoa) in lakes of the Qinghai-Tibet Plateau: Biodiversity, community structures, and protozoic biosilicification in relation to environmental properties and climate warming (2024)
    Elsevier
    In:  EPIC3The Science of The Total Environment, Elsevier, 913, pp. 169661-169661, ISSN: 0048-9697
    Details
    Publication Date: 2024-06-21
    Description: The Qinghai-Tibet Plateau (QTP) is characterized by a vast number of frozen and unfrozen freshwater reservoirs, which is why it is also called “the third pole” of the Earth or “Asian Water Tower”. We analyzed testate amoeba (TA) biodiversity and corresponding protozoic biosilicification in lake sediments of the QTP in relation to environmental properties (freshwater conditions, elevation, and climate). As TA are known as excellent bio-indicators, our results allowed us to derive conclusions about the influence of climate warming on TA communities and microbial biogeochemical silicon (Si) cycling. We found a total of 113 TA taxa including some rare and one unknown species in the analyzed lake sediments of the QTP highlighting the potential of this remote region for TA biodiversity. 〉1/3 of the identified TA taxa were relatively small (〈30 μm) reflecting the relatively harsh environmental conditions in the examined lakes. TA communities were strongly affected by physico-chemical properties of the lakes, especially water temperature and pH, but also elevation and climate conditions (temperature, precipitation). Our study reveals climate-related changes in TA biodiversity with consequences for protozoic biosilicification. As the warming trend in the QTP is two to three times faster compared to the global average, our results provide not only deeper insights into the relations between TA biodiversity and environmental properties, but also predictions of future developments in other regions of the world. Moreover, our results provide fundamental data for paleolimnological reconstructions. Thus, examining the QTP is helpful to understand microbial biogeochemical Si cycling in the past, present, and future.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 3
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    Seasonal variations of a coastal fish community in relation to environmental parameters - A case study of the Sylt-Rømø Bight, southeastern North Sea (2024)
    Elsevier
    In:  EPIC3Estuarine Coastal and Shelf Science, Elsevier, 300, pp. 108723-108723, ISSN: 0272-7714
    Details
    Publication Date: 2024-05-03
    Description: The Wadden Sea is a transition area between land, rivers, and the North Sea. It is of great ecological importance for a wide range of fish species that use it in the course of their life cycle for various purposes. It is a highly dynamic environment and is subject to strong seasonal patterns and annual variations in abiotic conditions. The Sylt-Rømø Bight (SRB) is a semi-enclosed tidal basin in the northern Wadden Sea between the islands of Sylt (Germany) and Rømø (Denmark). Monthly monitoring data of juvenile fish taken in the SRB from 2007 to 2019 were analyzed to determine the changes in species composition in comparison to previous monitoring programs (1989–1995). The long-term trends, common patterns, and potential effects of environmental parameters (sea surface temperature (SST), salinity, chlorophyll a, and the North Atlantic Oscillation (NAO) winter indices) were determined. In total, 55 species were recorded and only 22 of these together accounted for more than 95% of the total abundance for the entire monitoring. Results showed a changed species composition as we did not find two boreal, one Lusitanian, and one circum-temperate species recorded in the previous programs. Instead, one boreal, six Lusitanian, and one Atlantic species were observed for the first time. The fish community was dominated by high seasonal fluctuations of abundance with either dome-shaped, increasing, or decreasing trends. Dynamic Factor Analysis (DFA) partitioned the fish community into three seasonal assemblages based on SST preferences. Redundancy Analysis (RDA) revealed that environmental parameters explained 29 % of the variations in the fish community. These variances were partly a result of the spring immigration of Lusitanian species and the emigration of boreal species and vice versa in autumn. The absence of four previously reported species and the addition of eight new species support the hypothesis that warm-adapted species are increasing in the Wadden Sea. The inclusion of these seasonal variations into conservation and management practices is critical to the sustainable management of marine and coastal ecosystems covering spawning, nursery, and feeding grounds.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 4
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    Sliding modes in the management of renewable resources (2022)
    Elsevier
    In:  EPIC3Automatica, Elsevier, 144, pp. 110487-110487, ISSN: 0005-1098
    Details
    Publication Date: 2023-10-23
    Description: The presence of tipping points in ecological systems implies abrupt changes in the dynamics of the ecosystem. In these piecewise-smooth dynamical systems sliding dynamics, i.e., dynamics on the switching boundary, have been reported for population models. However, the question whether or not, and if so under which conditions, sliding dynamics may occur in an optimally controlled system have not yet been studied. We explore this issue in a simple harvesting model with two regimes, and find that optimal sliding may occur if regular steady states do not exist. Hence, sliding dynamics may be part of an optimal policy.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 5
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    Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections (2020)
    Pensoft Publishers
    In:  Research Ideas and Outcomes vol. 6 no. e58030
    Details
    Publication Date: 2024-01-12
    Description: We describe an effective approach to automated text digitisation with respect to natural history specimen labels. These labels contain much useful data about the specimen including its collector, country of origin, and collection date. Our approach to automatically extracting these data takes the form of a pipeline. Recommendations are made for the pipeline\'s component parts based on state-of-the-art technologies. \n \nOptical Character Recognition (OCR) can be used to digitise text on images of specimens. However, recognising text quickly and accurately from these images can be a challenge for OCR. We show that OCR performance can be improved by prior segmentation of specimen images into their component parts. This ensures that only text-bearing labels are submitted for OCR processing as opposed to whole specimen images, which inevitably contain non-textual information that may lead to false positive readings. In our testing Tesseract OCR version 4.0.0 offers promising text recognition accuracy with segmented images. \n \nNot all the text on specimen labels is printed. Handwritten text varies much more and does not conform to standard shapes and sizes of individual characters, which poses an additional challenge for OCR. Recently, deep learning has allowed for significant advances in this area. Google\'s Cloud Vision, which is based on deep learning, is trained on large-scale datasets, and is shown to be quite adept at this task. This may take us some way towards negating the need for humans to routinely transcribe handwritten text. \n \nDetermining the countries and collectors of specimens has been the goal of previous automated text digitisation research activities. Our approach also focuses on these two pieces of information. An area of Natural Language Processing (NLP) known as Named Entity Recognition (NER) has matured enough to semi-automate this task. Our experiments demonstrated that existing approaches can accurately recognise location and person names within the text extracted from segmented images via Tesseract version 4.0.0. \n \nWe have highlighted the main recommendations for potential pipeline components. The paper also provides guidance on selecting appropriate software solutions. These include automatic language identification, terminology extraction, and integrating all pipeline components into a scientific workflow to automate the overall digitisation process.
    Keywords: automated text digitisation ; natural language processing ; named entity recognition ; optical character recognition ; handwritten text recognition ; language identification ; terminology extraction ; scientific workflows ; natural history specimens ; label data
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 6
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    Navigating taxonomic complexity: a use-case report on FAIR scientific name-matching service usage in ENVRI Research infrastructures (2024)
    Pensoft Publishers
    In:  Research Ideas and Outcomes vol. 10 no. e121871
    Details
    Publication Date: 2024-04-12
    Description: This paper presents a use-case conducted within the ENVRI FAIR project, examining challenges and opportunities in deploying FAIR-aligned (ensuring Findability, Accessibility, Interoperability and Reusability) scientific name-matching services across Environmental Research Infrastructures (RIs). Six services were tested using various name variations, revealing inconsistencies in match types, status reporting and handling of canonical forms and typos. These diversities pose challenges for RI data pipelines and interoperability. The paper underscores the importance of standardised tools, enhanced communication, training, collaboration and shared resources. Addressing these needs can facilitate more effective FAIR implementation within the ENVRI community and biodiversity research. This, in turn, will empower RIs to seamlessly integrate and leverage scientific names, unlocking the full potential of their data for research and policy implementation.
    Keywords: scientific names ; taxonomy ; biodiversity ; FAIR ; ENVRI
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 7
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    Decommissioning of offshore wind farms and its impact on benthic ecology (2023)
    Elsevier
    In:  EPIC3Journal of Environmental Management, Elsevier, 347, pp. 119022-119022, ISSN: 0301-4797
    Details
    Publication Date: 2024-01-31
    Description: At the end of their operational life time offshore wind farms need to be decommissioned. How and to what extent the removal of the underwater structures impairs the ecosystem that developed during the operational phase of the wind farm is not known. So, decision makers face a knowledge gap, making the consideration of such ecological impacts challenging when planning decommissioning. This study evaluates how complete or partial decommissioning of foundation structure and scour protection layer impacts local epibenthic macrofauna biodiversity. We assessed three decommissioning alternatives (one for complete and two for partial removal) regarding their impact on epibenthic macrofauna species richness. The results imply that leaving the scour protection layer in situ will preserve a considerable number of species while cutting of the foundation structure above seabed will be beneficial for the fauna of such foundation structures where no scour protection is installed. These results should be taken with a grain of salt, as the current data base is rather limited. Data need to be improved substantially to allow for reliable statements and sound advice regarding the ecological impact of offshore wind farm decommissioning.
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    A molecular and epidemiological study of Grillotia (Cestoda: Trypanorhyncha) larval infection in Etmopterus spinax (Elasmobranchii: Squaliformes) in the Mediterranean Sea and Northeast Atlantic Ocean (2023)
    Elsevier
    In:  EPIC3Deep Sea Research Part I Oceanographic Research Papers, Elsevier, 199, pp. 104102-104102, ISSN: 0967-0637
    Details
    Publication Date: 2024-04-22
    Description: Amongst other factors, topographic features can influence the genetic variability among populations of marine organisms. This applies to host species but also to their parasites, which are poorly studied regarding this aspect, as well as with regard to their use as bioindicators. In the present work, the ribosomal DNA (28S rDNA) was used to assess genetic diversity of Grillotia (Cestoda, Trypanorhyncha) larvae in one of its paratenic hosts, namely Etmopterus spinax, across five different regions (off Scotland, Celtic, Alboran and Balearic Seas and off Cyprus) belonging to three major geographic areas (Northeast Atlantic, western and eastern Mediterranean). The obtained sequences revealed a total of 18 polymorphic sites and 17 haplotypes, as well as significant values of variance throughout the five different regions. Reconstructed phylogenetic trees highlighted that all Grillotia sp. sequences formed a monophyletic group, but divergent lineages split into different main clades which were in relation to the area of origin, with a consistent cluster of sequences from the Atlantic Ocean, as well as another from the Eastern Mediterranean. In contrast, low genetic differentiation was observed between samples from Balearic and Alboran Seas, and with respect to Grillotia sp. larvae from the Gulf of Naples analysed in a previous study. Geographical differences in parasite infection descriptors (prevalence, abundance, and intensity) were assessed, revealing significant differences among the sampled regions. The present study indicates that geographical distance and submarine barriers affect not only the connectivity of hosts but also their parasite infrapopulations by limiting interpopulation dispersal. It underlines the usefulness of parasites as biological tags for the study of susceptible and data-poor host species such as deep-water sharks and its potential implications for host population management and protection measures.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
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    Numerous new records of tropical non-indigenous species in the Eastern Mediterranean highlight the challenges of their recognition and identification (2021)
    Pensoft Publishers
    In:  ZooKeys vol. 1010, pp. 1-95
    Details
    Publication Date: 2024-01-12
    Description: New data on 52 non-indigenous mollusks in the Eastern Mediterranean Sea is reported. Fossarus sp. (aff. aptus sensu Blatterer 2019), Coriophora lessepsiana Albano, Bakker & Sabelli, sp. nov., Cerithiopsis sp. aff. pulvis, Joculator problematicus Albano & Steger, sp. nov., Cerithiopsis sp., Elachisina sp., Iravadia aff. elongata, Vitrinella aff. Vitrinella sp. 1 (sensu Blatterer 2019), Melanella orientalis, Parvioris aff. dilecta, Odostomia cf. dalli, Oscilla virginiae, Parthenina cossmanni, Parthenina typica, Pyrgulina craticulata, Turbonilla funiculata, Cylichna collyra, Musculus coenobitus, Musculus aff. viridulus, Chavania erythraea, Scintilla cf. violescens, Iacra seychellarum and Corbula erythraeensis are new records for the Mediterranean. An unidentified gastropod, Skeneidae indet., Triphora sp., Hypermastus sp., Sticteulima sp., Vitreolina cf. philippi, Odostomia (s.l.) sp. 1, Henrya (?) sp., and Semelidae sp. are further potential new non-indigenous species although their status should be confirmed upon final taxonomic assessment. Additionally, the status of Dikoleps micalii, Hemiliostraca clandestina comb. nov. and H. athenamariae comb. nov. is changed to non-indigenous, range extensions for nine species and the occurrence of living individuals for species previously recorded from empty shells only are reported. Opimaphora blattereri Albano, Bakker & Sabelli, sp. nov. is described from the Red Sea for comparison with the morphologically similar C. lessepsiana Albano, Bakker & Sabelli, sp. nov. The taxonomic part is followed by a discussion on how intensive fieldwork and cooperation among institutions and individuals enabled such a massive report, and how the poor taxonomic knowledge of the Indo-Pacific fauna hampers non-indigenous species detection and identification. Finally, the hypothesis that the simultaneous analysis of quantitative benthic death assemblages can support the assignment of non-indigenous status to taxonomically undetermined species is discussed.
    Keywords: Animal Science and Zoology ; Ecology ; Evolution ; Behavior and Systematics ; Cerithiopsidae ; invasion biology ; Lessepsian invasion ; Mollusca ; new species ; Red Sea ; taxonomy ; Triphoridae
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 10
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    Diversity and regional distribution of harmful algal events along the Atlantic margin of Europe (2021)
    Elsevier
    In:  EPIC3Harmful Algae, Elsevier, ISSN: 15689883
    Details
    Publication Date: 2023-03-13
    Description: The IOC-ICES-PICES Harmful Algal Event Database (HAEDAT) was used to describe the diversity and spatiotemporal distribution of harmful algal events along the Atlantic margin of Europe from 1987 - 2018. The majority of events recorded are caused by Diarrhetic Shellfish Toxins (DSTs). These events are recorded annually over a wide geographic area from southern Spain to northern Scotland and Iceland, and are responsible for annual closures of many shellfish harvesting areas. The dominant causative dinoflagellates, members of the morphospecies ‘Dinophysis acuminata complex’ and D. acuta, are common in the waters of the majority of countries affected. There are regional differences in the causative species associated with PST events; the coasts of Spain and Portugal with the dinoflagellates Alexandrium minutum and Gymnodinium catenatum, north west France/south west England/south Ireland with A. minutum, and Scotland/Faroe Islands/Iceland with A. catenella. This can influence the duration and spatial scale of PST events as well as the toxicity of shellfish. The diatom Pseudo-nitzschia australis is the most widespread Domoic Acid (DA) producer, with records coming from Spain, Portugal, France, Ireland and the UK. Amnesic Shellfish Toxins (ASTs) have caused prolonged closures for the scallop fishing industry due to the slow depuration rate of DA. Amendments to EU shellfish hygiene regulations introduced between 2002 and 2005 facilitated end-product testing and sale of adductor muscle. This reduced the impact of ASTs on the scallop fishing industry and thus the number of recorded HAEDAT events. Azaspiracids (AZAs) are the most recent toxin group responsible for events to be characterised in the ICES area. Events associated with AZAs have a discrete distribution with the majority recorded along the west coast of Ireland. Ciguatera Poisoning (CP) has been an emerging issue in the Canary Islands and Madeira since 2004. The majority of aquaculture and wild fish mortality events are associated with blooms of the dinoflagellate Karenia mikimotoi and raphidophyte Heterosigma akashiwo. Such fish killing events occur infrequently yet can cause significant mortalities. Interannual variability was observed in the annual number of HAEDAT areas with events associated with individual shellfish toxin groups. HABs represent a continued risk for the aquaculture industry along the Atlantic margin of Europe and along the Atlantic margin of Europe and should be accounted for when considering expansion of the industry or operational shifts to offshore areas.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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