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  • Articles  (43)
  • Elsevier  (29)
  • Springer Nature  (10)
  • Pensoft Publishers  (4)
  • Dessau-Roßlau : Umweltbundesamt
  • 2020-2024  (43)
  • 1
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    Developing expert scientific consensus on the environmental and societal effects of marine artificial structures prior to decommissioning (2024)
    Elsevier
    In:  EPIC3Journal of Environmental Management, Elsevier, 352, pp. 119897-119897, ISSN: 0301-4797
    Details
    Publication Date: 2024-01-31
    Description: Thousands of artificial (‘human-made’) structures are present in the marine environment, many at or approaching end-of-life and requiring urgent decisions regarding their decommissioning. No consensus has been reached on which decommissioning option(s) result in optimal environmental and societal outcomes, in part, owing to a paucity of evidence from real-world decommissioning case studies. To address this significant challenge, we asked a worldwide panel of scientists to provide their expert opinion. They were asked to identify and characterise the ecosystem effects of artificial structures in the sea, their causes and consequences, and to identify which, if any, should be retained following decommissioning. Experts considered that most of the pressures driving ecological and societal effects from marine artificial structures (MAS) were of medium severity, occur frequently, and are dependent on spatial scale with local-scale effects of greater magnitude than regional effects. The duration of many effects following decommissioning were considered to be relatively short, in the order of days. Overall, environmental effects of structures were considered marginally undesirable, while societal effects marginally desirable. Experts therefore indicated that any decision to leave MAS in place at end-of-life to be more beneficial to society than the natural environment. However, some individual environmental effects were considered desirable and worthy of retention, especially in certain geographic locations, where structures can support improved trophic linkages, increases in tourism, habitat provision, and population size, and provide stability in population dynamics. The expert analysis consensus that the effects of MAS are both negative and positive for the environment and society, gives no strong support for policy change whether removal or retention is favoured until further empirical evidence is available to justify change to the status quo. The combination of desirable and undesirable effects associated with MAS present a significant challenge for policy- and decision-makers in their justification to implement decommissioning options. Decisions may need to be decided on a case-by-case basis accounting for the trade-off in costs and benefits at a local level.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
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    A baseline study of spatial variability of bacteria (total coliform, E. coli, and Enterococcus spp.) as biomarkers of pollution in ten tropical Atlantic beaches: concern for environmental and public health (2021)
    Springer Nature
    In:  EPIC3Environmental Science and Pollution Research, Springer Nature, 28(36), pp. 50941-50965, ISSN: 0944-1344
    Details
    Publication Date: 2023-03-07
    Description: Coastal water quality in urban cities is increasingly impacted by human activities such as agricultural runoff, sewage discharges, and poor sanitation. However, environmental factors controlling bacteria abundance remain poorly understood. The study employed multiple indicators to assess ten beach water qualities in Ghana during minor wet seasons. Environmental parameters (e.g. temperature, electrical conductivity, total dissolved solids) were measured in situ using the Horiba multiple parameter probe. Surface water samples were collected to measure total suspended solids, nutrients, and chlorophyll-a via standard methods and bacteria determination through membrane filtration. Environmental parameters measured showed no significant variation for the sample period. However, bacteria loads differ significantly (p = 0.024) among the beaches and influenced significantly by nitrate (55.3%, p = 0.02) and total dissolved solids (17.1%, p = 0.017). The baseline study detected an increased amount of total coliforms and faecal indicator bacteria (Escherichia coli and Enterococcus spp.) in beach waters along the coast of Ghana, suggesting faecal contamination, which can pose health risks. The mean ± standard deviations of bacteria loads in beach water are total coliforms (4.06 × 103 ± 4.16 × 103 CFU/100 mL), E. coli (7.06 × 102 ± 1.72 × 103 CFU/100 mL), and Enterococcus spp. (6.15 × 102 ± 1.75 × 103 CFU/100 mL). Evidence of pollution calls for public awareness to prevent ecological and health-related risks and policy reforms to control coastal water pollution. Future research should focus on identifying the sources of contamination in the tropical Atlantic region.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 3
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    Testate amoebae (Protozoa) in lakes of the Qinghai-Tibet Plateau: Biodiversity, community structures, and protozoic biosilicification in relation to environmental properties and climate warming (2024)
    Elsevier
    In:  EPIC3The Science of The Total Environment, Elsevier, 913, pp. 169661-169661, ISSN: 0048-9697
    Details
    Publication Date: 2024-06-21
    Description: The Qinghai-Tibet Plateau (QTP) is characterized by a vast number of frozen and unfrozen freshwater reservoirs, which is why it is also called “the third pole” of the Earth or “Asian Water Tower”. We analyzed testate amoeba (TA) biodiversity and corresponding protozoic biosilicification in lake sediments of the QTP in relation to environmental properties (freshwater conditions, elevation, and climate). As TA are known as excellent bio-indicators, our results allowed us to derive conclusions about the influence of climate warming on TA communities and microbial biogeochemical silicon (Si) cycling. We found a total of 113 TA taxa including some rare and one unknown species in the analyzed lake sediments of the QTP highlighting the potential of this remote region for TA biodiversity. 〉1/3 of the identified TA taxa were relatively small (〈30 μm) reflecting the relatively harsh environmental conditions in the examined lakes. TA communities were strongly affected by physico-chemical properties of the lakes, especially water temperature and pH, but also elevation and climate conditions (temperature, precipitation). Our study reveals climate-related changes in TA biodiversity with consequences for protozoic biosilicification. As the warming trend in the QTP is two to three times faster compared to the global average, our results provide not only deeper insights into the relations between TA biodiversity and environmental properties, but also predictions of future developments in other regions of the world. Moreover, our results provide fundamental data for paleolimnological reconstructions. Thus, examining the QTP is helpful to understand microbial biogeochemical Si cycling in the past, present, and future.
    Repository Name: EPIC Alfred Wegener Institut
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  • 4
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    Seasonal variations of a coastal fish community in relation to environmental parameters - A case study of the Sylt-Rømø Bight, southeastern North Sea (2024)
    Elsevier
    In:  EPIC3Estuarine Coastal and Shelf Science, Elsevier, 300, pp. 108723-108723, ISSN: 0272-7714
    Details
    Publication Date: 2024-05-03
    Description: The Wadden Sea is a transition area between land, rivers, and the North Sea. It is of great ecological importance for a wide range of fish species that use it in the course of their life cycle for various purposes. It is a highly dynamic environment and is subject to strong seasonal patterns and annual variations in abiotic conditions. The Sylt-Rømø Bight (SRB) is a semi-enclosed tidal basin in the northern Wadden Sea between the islands of Sylt (Germany) and Rømø (Denmark). Monthly monitoring data of juvenile fish taken in the SRB from 2007 to 2019 were analyzed to determine the changes in species composition in comparison to previous monitoring programs (1989–1995). The long-term trends, common patterns, and potential effects of environmental parameters (sea surface temperature (SST), salinity, chlorophyll a, and the North Atlantic Oscillation (NAO) winter indices) were determined. In total, 55 species were recorded and only 22 of these together accounted for more than 95% of the total abundance for the entire monitoring. Results showed a changed species composition as we did not find two boreal, one Lusitanian, and one circum-temperate species recorded in the previous programs. Instead, one boreal, six Lusitanian, and one Atlantic species were observed for the first time. The fish community was dominated by high seasonal fluctuations of abundance with either dome-shaped, increasing, or decreasing trends. Dynamic Factor Analysis (DFA) partitioned the fish community into three seasonal assemblages based on SST preferences. Redundancy Analysis (RDA) revealed that environmental parameters explained 29 % of the variations in the fish community. These variances were partly a result of the spring immigration of Lusitanian species and the emigration of boreal species and vice versa in autumn. The absence of four previously reported species and the addition of eight new species support the hypothesis that warm-adapted species are increasing in the Wadden Sea. The inclusion of these seasonal variations into conservation and management practices is critical to the sustainable management of marine and coastal ecosystems covering spawning, nursery, and feeding grounds.
    Repository Name: EPIC Alfred Wegener Institut
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  • 5
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    Sliding modes in the management of renewable resources (2022)
    Elsevier
    In:  EPIC3Automatica, Elsevier, 144, pp. 110487-110487, ISSN: 0005-1098
    Details
    Publication Date: 2023-10-23
    Description: The presence of tipping points in ecological systems implies abrupt changes in the dynamics of the ecosystem. In these piecewise-smooth dynamical systems sliding dynamics, i.e., dynamics on the switching boundary, have been reported for population models. However, the question whether or not, and if so under which conditions, sliding dynamics may occur in an optimally controlled system have not yet been studied. We explore this issue in a simple harvesting model with two regimes, and find that optimal sliding may occur if regular steady states do not exist. Hence, sliding dynamics may be part of an optimal policy.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 6
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    Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections (2020)
    Pensoft Publishers
    In:  Research Ideas and Outcomes vol. 6 no. e58030
    Details
    Publication Date: 2024-01-12
    Description: We describe an effective approach to automated text digitisation with respect to natural history specimen labels. These labels contain much useful data about the specimen including its collector, country of origin, and collection date. Our approach to automatically extracting these data takes the form of a pipeline. Recommendations are made for the pipeline\'s component parts based on state-of-the-art technologies. \n \nOptical Character Recognition (OCR) can be used to digitise text on images of specimens. However, recognising text quickly and accurately from these images can be a challenge for OCR. We show that OCR performance can be improved by prior segmentation of specimen images into their component parts. This ensures that only text-bearing labels are submitted for OCR processing as opposed to whole specimen images, which inevitably contain non-textual information that may lead to false positive readings. In our testing Tesseract OCR version 4.0.0 offers promising text recognition accuracy with segmented images. \n \nNot all the text on specimen labels is printed. Handwritten text varies much more and does not conform to standard shapes and sizes of individual characters, which poses an additional challenge for OCR. Recently, deep learning has allowed for significant advances in this area. Google\'s Cloud Vision, which is based on deep learning, is trained on large-scale datasets, and is shown to be quite adept at this task. This may take us some way towards negating the need for humans to routinely transcribe handwritten text. \n \nDetermining the countries and collectors of specimens has been the goal of previous automated text digitisation research activities. Our approach also focuses on these two pieces of information. An area of Natural Language Processing (NLP) known as Named Entity Recognition (NER) has matured enough to semi-automate this task. Our experiments demonstrated that existing approaches can accurately recognise location and person names within the text extracted from segmented images via Tesseract version 4.0.0. \n \nWe have highlighted the main recommendations for potential pipeline components. The paper also provides guidance on selecting appropriate software solutions. These include automatic language identification, terminology extraction, and integrating all pipeline components into a scientific workflow to automate the overall digitisation process.
    Keywords: automated text digitisation ; natural language processing ; named entity recognition ; optical character recognition ; handwritten text recognition ; language identification ; terminology extraction ; scientific workflows ; natural history specimens ; label data
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 7
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    GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality (2023)
    Springer Nature
    In:  EPIC3Scientific Data, Springer Nature, 10(1), pp. 100-100, ISSN: 2052-4463
    Details
    Publication Date: 2024-04-10
    Description: The development of algorithms for remote sensing of water quality (RSWQ) requires a large amount of in situ data to account for the bio-geo-optical diversity of inland and coastal waters. The GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments (GLORIA) includes 7,572 curated hyperspectral remote sensing reflectance measurements at 1 nm intervals within the 350 to 900 nm wavelength range. In addition, at least one co-located water quality measurement of chlorophyll a, total suspended solids, absorption by dissolved substances, and Secchi depth, is provided. The data were contributed by researchers affiliated with 59 institutions worldwide and come from 450 different water bodies, making GLORIA the de-facto state of knowledge of in situ coastal and inland aquatic optical diversity. Each measurement is documented with comprehensive methodological details, allowing users to evaluate fitness-for-purpose, and providing a reference for practitioners planning similar measurements. We provide open and free access to this dataset with the goal of enabling scientific and technological advancement towards operational regional and global RSWQ monitoring.
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    Navigating taxonomic complexity: a use-case report on FAIR scientific name-matching service usage in ENVRI Research infrastructures (2024)
    Pensoft Publishers
    In:  Research Ideas and Outcomes vol. 10 no. e121871
    Details
    Publication Date: 2024-04-12
    Description: This paper presents a use-case conducted within the ENVRI FAIR project, examining challenges and opportunities in deploying FAIR-aligned (ensuring Findability, Accessibility, Interoperability and Reusability) scientific name-matching services across Environmental Research Infrastructures (RIs). Six services were tested using various name variations, revealing inconsistencies in match types, status reporting and handling of canonical forms and typos. These diversities pose challenges for RI data pipelines and interoperability. The paper underscores the importance of standardised tools, enhanced communication, training, collaboration and shared resources. Addressing these needs can facilitate more effective FAIR implementation within the ENVRI community and biodiversity research. This, in turn, will empower RIs to seamlessly integrate and leverage scientific names, unlocking the full potential of their data for research and policy implementation.
    Keywords: scientific names ; taxonomy ; biodiversity ; FAIR ; ENVRI
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 9
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    Mining questions of ‘what’ and ‘who’: deepening discussions of the seabed for future policy and governance (2022)
    Springer Nature
    In:  EPIC3Maritime Studies, Springer Nature, 21(3), pp. 327-338, ISSN: 1872-7859
    Details
    Publication Date: 2023-10-30
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉In spite of a proliferation of academic and policy-oriented interest in deep sea mining (DSM), this paper argues that two underlying questions remain underexplored. The first relates to 〈jats:italic〉what〈/jats:italic〉 exactly the seabed 〈jats:italic〉is〈/jats:italic〉; the second to 〈jats:italic〉who〈/jats:italic〉 the stakeholders 〈jats:italic〉are〈/jats:italic〉. It is argued that a greater interrogation of how the seabed is defined and understood, and a deeper consideration of how stakeholders are identified and the politics of their inclusion, is crucial to the enactment of policy and planning techniques. Through the analysis of current regulations to govern DSM in both national and international jurisdictions, this paper critically examines these seemingly banal but vital questions in different contexts. It is contended that most regulations are ‘fuzzy’ when it comes to addressing these questions, with the result that different understandings of the seabed and the implications of mining are ignored and that who stakeholders are and how they are defined causes many relevant voices to be unheard. It is argued, therefore, that it is imperative to address these often-overlooked questions directly in order to inform future seabed policy and governance.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    Availability of vitamin B12 and its lower ligand intermediate α-ribazole impact prokaryotic and protist communities in oceanic systems (2022)
    Springer Nature
    In:  EPIC3The ISME Journal: Multidisciplinary Journal of Microbial Ecology, Springer Nature, 16(8), pp. 2002-2014, ISSN: 1751-7362
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    Publication Date: 2023-11-14
    Description: Genome analyses predict that the cofactor cobalamin (vitamin B12, called B12 herein) is produced by only one-third of all prokaryotes but almost all encode at least one B12-dependent enzyme, in most cases methionine synthase. This implies that the majority of prokaryotes relies on exogenous B12 supply and interacts with producers. B12 consists of a corrin ring centred around a cobalt ion and the lower ligand 5’6-dimethylbenzimidazole (DMB). It has never been tested whether availability of this pivotal cofactor, DMB or its intermediate α-ribazole affect growth and composition of prokaryotic microbial communities. Here we show that in the subtropical, equatorial and polar frontal Pacific Ocean supply of B12 and α-ribazole enhances heterotrophic prokaryotic production and alters the composition of prokaryotic and heterotrophic protist communities. In the polar frontal Pacific, the SAR11 clade and Oceanospirillales increased their relative abundances upon B12 supply. In the subtropical Pacific, Oceanospirillales increased their relative abundance upon B12 supply as well but also downregulated the transcription of the btuB gene, encoding the outer membrane permease for B12. Surprisingly, Prochlorococcus, known to produce pseudo-B12 and not B12, exhibited significant upregulation of genes encoding key proteins of photosystem I + II, carbon fixation and nitrate reduction upon B12 supply in the subtropical Pacific. These findings show that availability of B12 and α-ribazole affect growth and composition of prokaryotic and protist communities in oceanic systems thus revealing far-reaching consequences of methionine biosynthesis and other B12-dependent enzymatic reactions on a community level.
    Repository Name: EPIC Alfred Wegener Institut
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