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  • Journals
  • Articles  (4)
  • Open Access-Papers  (4)
  • Evolution  (3)
  • Ecology  (2)
  • Customary management  (1)
  • 2020-2024  (4)
  • 2022  (4)
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  • Journals
  • Articles  (4)
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  • Open Access-Papers  (4)
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  • 2020-2024  (4)
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  • 1
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    Disentangling a complex genus: systematics, biogeography and bioactivity of the genus Phyllanthus L. and related genera of tribe Phyllantheae (Phyllanthaceae) (2022)
    Details
    Publication Date: 2024-01-12
    Description: The largest genus within the Phyllanthaceae family is a group called Phyllanthus L. Recent studies have shown, that Phyllanthus is paraphyletic with the genera Glochidion, Breynia and Synostemon nested within it. In this thesis, I study the evolution and systematics of Phyllanthus and how to solve the apparent paraphyly. First we explore past morphological subgroups to come to a subdivision, which was tested using molecular phylogenetics. Several species of Phyllanthus are also used in traditional medicine and by utilizing the living collections of the Hortus botanicus Leiden, we tested for antibacterial and antifungal bioactivity. The phylogeny resulting from this study is used to study the historical biogeography and diversification of the tribe and to propose a new classification where Phyllanthus is separated into several smaller genera.
    Keywords: Taxonomy ; Systematics ; Botany ; Evolution ; Biogeography ; Phyllanthus ; Phyllanthaceae
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/doctoralThesis
    Format: application/pdf
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  • 2
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    Eight new Halophytophthora species from marine and brackish-water ecosystems in Portugal and an updated phylogeny for the genus (2022)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 48, pp. 54-90
    Details
    Publication Date: 2024-03-24
    Description: During an oomycete survey in December 2015, 10 previously unknown Halophytophthora taxa were isolated from marine and brackish water of tidal ponds and channels in saltmarshes, lagoon ecosystems and river estuaries at seven sites along the Algarve coast in the South of Portugal. Phylogenetic analyses of LSU and ITS datasets, comprising all described Halophytophthora species, the 10 new Halophytophthora taxa and all relevant and distinctive sequences available from GenBank, provided an updated phylogeny of the genus Halophytophthora s.str. showing for the first time a structure of 10 clades designated as Clades 1–10. Nine of the 10 new Halophytophthora taxa resided in Clade 6 together with H. polymorphica and H. vesicula. Based on differences in morphology and temperature-growth relations and a multigene (LSU, ITS, Btub, hsp90, rpl10, tigA, cox1, nadh1, rps10) phylogeny, eight new Halophytophthora taxa from Portugal are described here as H. brevisporangia, H. celeris, H. frigida, H. lateralis, H. lusitanica, H. macrosporangia, H. sinuata and H. thermoambigua. Three species, H. frigida, H. macrosporangia and H. sinuata, have a homothallic breeding system while the remaining five species are sterile. Pathogenicity and litter decomposition tests are underway to clarify their pathological and ecological role in the marine and brackish-water ecosystems. More oomycete surveys in yet undersurveyed regions of the world and population genetic or phylogenomic analyses of global populations are needed to clarify the origin of the new Halophytophthora species.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; breeding system ; ecological role ; evolution ; lifestyle ; oomycetes ; Peronosporaceae ; Phytophthora
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
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    Marine conservation beyond MPAs: Towards the recognition of other effective area-based conservation measures (OECMs) in Indonesia (2022)
    In:  Marine Policy vol. 137 no. 104939
    Details
    Publication Date: 2024-06-13
    Description: In a marine environment that is rapidly changing due to anthropogenic activities and climate change, area-based management tools are often used to mitigate threats and conserve biodiversity. Marine protected areas (MPAs) are amongst the most widespread and recognized marine conservation tools worldwide, however, MPAs alone are inadequate to address the environmental crisis. The promotion of other effective area-based conservation measures (OECMs) under draft Target 3 of the Post-2020 Global Biodiversity Framework, i.e., conserving 30% of marine areas by 2030, holds promise to acknowledge sites and practices occurring beyond MPAs that contribute to conservation. Here, we evaluate the potential recognition of OECMs into Indonesia's national policy framework on marine resource management and provide the first-ever overview of distribution and types of potential marine OECMs in Indonesia, including a review of the existing evidence on conservation effectiveness. We identified 〉 390 potential marine OECMs, led by government, customary and local communities, or the private sector, towards diverse management objectives, including habitat protection, traditional/customary management, fisheries, tourism, or other purposes. While some evidence exists regarding the conservation effectiveness of these practices, the long-term impacts on biodiversity of all potential marine OECMs in Indonesia are unknown. Many OECM elements have been included in several national policies, yet there are no established mechanisms to identify, recognize and report sites as OECMs in Indonesia. We propose four transformational strategies for future OECM recognition in Indonesia, namely: (i) safeguard customary and traditional communities, (ii) leverage cross-sector and cross-scale collaboration, (iii) focus on delivering outcomes, and (iv) streamline legal frameworks. Our study shows that OECMs have the potential to play a significant role in underpinning marine area-based conservation in Indonesia, including supporting the Government of Indonesia in reaching national and international conservation targets and goals.
    Keywords: Area-based management ; Biodiversity conservation ; Customary management ; Fisheries ; Co-management ; Sustainable marine management
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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  • 4
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    Diversity of Sporocadaceae (pestalotioid fungi) from Rosa in China (2022)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 49 no. 1, pp. 201-260
    Details
    Publication Date: 2024-03-20
    Description: Rosa (Rosaceae) is an important ornamental and medicinal plant genus worldwide, with several species being cultivated in China. Members of Sporocadaceae (pestalotioid fungi) are globally distributed and include endophytes, saprobes but also plant pathogens, infecting a broad range of host plants on which they can cause important plant diseases. Although several Sporocadaceae species were recorded to inhabit Rosa spp., the taxa occurring on Rosa remain largely unresolved. In this study, a total of 295 diseased samples were collected from branches, fruits, leaves and spines of eight Rosa species (R. chinensis, R. helenae, R. laevigata, R. multiflora, R. omeiensis, R. rugosa, R. spinosissima and R. xanthina) in Gansu, Henan, Hunan, Qinghai, Shaanxi Provinces and the Ningxia Autonomous Region of China. Subsequently 126 strains were obtained and identified based on comparisons of DNA sequence data. Based on these results 15 species residing in six genera of Sporocadaceae were delineated, including four known species (Pestalotiopsis chamaeropis, Pes. rhodomyrtus, Sporocadus sorbi and Spo. trimorphus) and 11 new species described here as Monochaetia rosarum, Neopestalotiopsis concentrica, N. subepidermalis, Pestalotiopsis tumida, Seimatosporium centrale, Seim. gracile, Seim. nonappendiculatum, Seim. parvum, Seiridium rosae, Sporocadus brevis, and Spo. spiniger. This study also represents the first report of Pes. chamaeropis, Pes. rhodomyrtus and Spo. sorbi on Rosa. The overall data revealed that Pestalotiopsis was the most prevalent genus, followed by Seimatosporium, while Pes. chamaeropis and Pes. rhodomyrtus were the two most prevalent species. Analysis of Sporocadaceae abundance on Rosa species and plant organs revealed that spines of R. chinensis had the highest species diversity.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Amphisphaeriales ; Ascomycota ; new taxa ; phylogeny ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
    Format: application/pdf
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