Description: Pigment concentration and pigment-based phytoplankton community composition data from a KOSMOS mesocosm experiment carried out in the frame work of the Ocean Artificial Upwelling project. The experiment was performed in the North-East Atlantic Ocean off the coast of Gran Canaria in autumn 2018 and lasted for 39 days. In this study we investigated the effect of different intensities of artificial upwelling combined with two upwelling modes (recurring additions versus one singular addition) on the phytoplankton community. Filters were analysed for a range of photosynthetic pigments using reverse-phase high-performance liquid chromatography (HPLC). Based on pigment concentrations, phytoplankton community composition was approximated using the CHEMTAX software with the original pigment ratios from Mackey et al (1996, doi:10.3354/meps144265). The input included Chl a, b, c2, and c3, peridinin, 19'-butanoyloxyfucoxanthin, fucoxanthin, neoxanthin, prasinoxanthin, violaxanthin, 19'-hexanoyloxyfucoxanthin, alloxanthin, diadinoxanthin, diatoxanthin and zeaxanthin. Divinyl Chl a was instead fully associated with Prochlorophyceae. The presence of the main phytoplankton groups is expressed in Chl a equivalents.

Description: Size fractionated primary productivity rate measurements through 14C radioisotope incorporation rates from a KOSMOS mesocosm experiment carried out in the frame work of the Ocean Artificial Upwelling project. The experiment was performed in the North-East Atlantic Ocean off the coast of Gran Canaria in autumn 2018 and lasted for 39 days. In this study we investigated the effect of different intensities of artificial upwelling combined with two upwelling modes (recurring additions versus one singular addition) on the phytoplankton community. Data shown includes production rates of dissolved organic carbon, particulate organic carbon in 3 size fractions (0.2-2 µm, 2-20 µm, 〉20 µm) and total organic carbon.

Description: Oxygen production and respiration rates from a KOSMOS mesocosm experiment carried out in the framework of the Ocean Artificial Upwelling project. The experiment was performed in the North-East Atlantic Ocean off the coast of Gran Canaria in autumn 2018 and lasted for 39 days. In this study we investigated the effect of different intensities of artificial upwelling combined with two upwelling modes (recurring additions versus one singular addition) on the phytoplankton community. Data shown includes gross and net community production as well as community respiration in µmol O2 per liter and hour/day. Measured through incubations and Winkler titrations.

Description: Recent evidence that dissolved organic carbon (DOC) is a significant component of the organic carbon flux below the photic layer of the ocean (1), together with verification of high respiration rates in the dark ocean (2), suggests that the downward flux of DOC may play a major role in supporting respiration there. Here we show, on the basis of examination of the relation between DOC and apparent oxygen utilization (AOU), that the DOC flux supports ~10% of the respiration in the dark ocean. The contribution of DOC to pelagic respiration below the surface mixed layer can be inferred from the relation between DOC and apparent oxygen utilization (AOU, µM O2), a variable quantifying the cumulative oxygen consumption since a water parcel was last in contact with the atmosphere. However, assessments of DOC/AOU relations have been limited to specific regions of the ocean (3, 4) and have not considered the global ocean. We assembled a large data set (N = 9824) of concurrent DOC and AOU observations collected in cruises conducted throughout the world's oceans (fig. S1, table S1) to examine the relative contribution of DOC to AOU and, therefore, respiration in the dark ocean. AOU increased from an average (±SE) 96.3 ± 2.0 µM at the base of the surface mixed layer (100 m) to 165.5 ± 4.3 µM at the bottom of the main thermocline (1000 m), with a parallel decline in the average DOC from 53.5 ± 0.2 to 43.4 ± 0.3 µM C (Fig. 1). In contrast, there is no significant decline in DOC with increasing depth beyond 1000 m depth (Fig. 1), indicating that DOC exported with overturning circulation plays a minor role in supporting respiration in the ocean interior (5). Assuming a molar respiratory quotient of 0.69, the decline in DOC accounts for 19.6 ± 0.4% of the AOU within the top 1000 m (Fig. 1). This estimate represents, however, an upper limit, because the correlation between DOC and AOU is partly due to mixing of DOC-rich warm surface waters with DOC-poor cold thermocline waters (6). Removal of this effect by regressing DOC against AOU and water temperature indicates that DOC supports only 8.4 ± 0.3% of the respiration in the mesopelagic waters.

Description: The data is from a mesocosm experiment set up outside Lima, Peru to study the influence of upwelling of oxygen minimum zone (OMZ) water. The mesocosm bags were 2 m in diameter and extended from the surface down to 19 m depth, where the last 2 m was a conical sediment trap. Eight mesocosm bags were used and they were moored at 12.0555°S; 77.2348°W just north of Isla San Lorenzo where the water depth is ~30 m. The experiment was started 25 February 2017 by closing the mesocosm bags and were run for 50 days. Two treatments were used (water with different OMZ signature), each with four replicates. Water (100 m3) from the OMZ was collected from two locations and depths. The first was collected from 12.028323°S; 77.223603°W from 30 m depth, and the second one from 12.044333°S; 77.377583°W from 70 m depth. The original aim was to collect severe and moderate OMZ signature water (differing in e.g. nitrate concentrations) from the first and second site, respectively. This assumption was based on long-term monitoring data, however, the chemical properties (e.g. nitrate concentration) was more similar in these water masses than anticipated, rather reflecting low and very low OMZ signatures from site 1 and 2 respectively. To have a baseline of measured variables, the mesocosms where closed and environmental and biological variables were determined over 10 days. After this period, the OMZ water was added to the mesocosms in two steps on day 11 and 12 after the enclosure of the mesocosms. As the mesocosms contain a specific volume (~54 m3), the process of adding the OMZ water started with first removing water from the mesocosms. The water removed (~20 m3) was pumped out from 11-12 m depth. A similar volume of OMZ water, from both collection sites, was then pumped into four replicate mesocosms each. The OMZ water was pumped into the mesocosms moving the input hose between 14-17 m depth. The water collected at 30 m depth was pumped into mesocosms M1, M4, M5 and M8 having a low OMZ signature and water from 70 m depth into mesocosms M2, M3, M6 and M7 having a very low OMZ signature. Due a halocline at 12 m depth (see below), the added OMZ water was not immediately mixed throughout the mesocosm bag. Sampling took place every second day over a period of 50 days, and all variables were taken with an integrated water sampler (HydroBios, IWS) pre-programed to fill from 0 – 10 m depth and all samples consisted of this integrated samples from the upper 10 m. The samples were stored dark in cool boxes and brought back to the laboratory and processed right away. Sampling took place in the morning, and the samples were usually back in the laboratory around noon. Measured variables included inorganic nutrients, dissolved organic nutrients, extracellular enzyme activity: leucine aminopeptidase (LAP) and alkaline phosphatase, and the phytoplankton and bacterial community composition.

Description: The data is from a mesocosm experiment set up outside Lima, Peru to study the influence of upwelling of oxygen minimum zone (OMZ) water. The mesocosm bags were 2 m in diameter and extended from the surface down to 19 m depth, where the last 2 m was a conical sediment trap. Eight mesocosm bags were used and they were moored at 12.0555°S; 77.2348°W just north of Isla San Lorenzo where the water depth is ~30 m. The experiment was started 25 February 2017 by closing the mesocosm bags and were run for 50 days. Two treatments were used (water with different OMZ signature), each with four replicates. Water (100 m3) from the OMZ was collected from two locations and depths. The first was collected from 12.028323°S; 77.223603°W from 30 m depth, and the second one from 12.044333°S; 77.377583°W from 70 m depth. The original aim was to collect severe and moderate OMZ signature water (differing in e.g. nitrate concentrations) from the first and second site, respectively. This assumption was based on long-term monitoring data, however, the chemical properties (e.g. nitrate concentration) was more similar in these water masses than anticipated, rather reflecting low and very low OMZ signatures from site 1 and 2 respectively. To have a baseline of measured variables, the mesocosms where closed and environmental and biological variables were determined over 10 days. After this period, the OMZ water was added to the mesocosms in two steps on day 11 and 12 after the enclosure of the mesocosms. As the mesocosms contain a specific volume (~54 m3), the process of adding the OMZ water started with first removing water from the mesocosms. The water removed (~20 m3) was pumped out from 11-12 m depth. A similar volume of OMZ water, from both collection sites, was then pumped into four replicate mesocosms each. The OMZ water was pumped into the mesocosms moving the input hose between 14-17 m depth. The water collected at 30 m depth was pumped into mesocosms M1, M4, M5 and M8 having a low OMZ signature and water from 70 m depth into mesocosms M2, M3, M6 and M7 having a very low OMZ signature. Due a halocline at 12 m depth (see below), the added OMZ water was not immediately mixed throughout the mesocosm bag. Sampling took place every second day over a period of 50 days, and all variables were taken with an integrated water sampler (HydroBios, IWS) pre-programed to fill from 0 – 10 m depth and all samples consisted of this integrated samples from the upper 10 m. The samples were stored dark in cool boxes and brought back to the laboratory and processed right away. Sampling took place in the morning, and the samples were usually back in the laboratory around noon. Measured variables included inorganic nutrients, dissolved organic nutrients, extracellular enzyme activity: leucine aminopeptidase (LAP) and alkaline phosphatase activity (APA), and the phytoplankton and bacterial community composition.

Description: The data is from a mesocosm experiment set up outside Lima, Peru to study the influence of upwelling of oxygen minimum zone (OMZ) water. The mesocosm bags were 2 m in diameter and extended from the surface down to 19 m depth, where the last 2 m was a conical sediment trap. Eight mesocosm bags were used and they were moored at 12.0555°S; 77.2348°W just north of Isla San Lorenzo where the water depth is ~30 m. The experiment was started 25 February 2017 by closing the mesocosm bags and were run for 50 days. Two treatments were used (water with different OMZ signature), each with four replicates. Water (100 m3) from the OMZ was collected from two locations and depths. The first was collected from 12.028323°S; 77.223603°W from 30 m depth, and the second one from 12.044333°S; 77.377583°W from 70 m depth. The original aim was to collect severe and moderate OMZ signature water (differing in e.g. nitrate concentrations) from the first and second site, respectively. This assumption was based on long-term monitoring data, however, the chemical properties (e.g. nitrate concentration) was more similar in these water masses than anticipated, rather reflecting low and very low OMZ signatures from site 1 and 2 respectively. To have a baseline of measured variables, the mesocosms where closed and environmental and biological variables were determined over 10 days. After this period, the OMZ water was added to the mesocosms in two steps on day 11 and 12 after the enclosure of the mesocosms. As the mesocosms contain a specific volume (~54 m3), the process of adding the OMZ water started with first removing water from the mesocosms. The water removed (~20 m3) was pumped out from 11-12 m depth. A similar volume of OMZ water, from both collection sites, was then pumped into four replicate mesocosms each. The OMZ water was pumped into the mesocosms moving the input hose between 14-17 m depth. The water collected at 30 m depth was pumped into mesocosms M1, M4, M5 and M8 having a low OMZ signature and water from 70 m depth into mesocosms M2, M3, M6 and M7 having a very low OMZ signature. Due a halocline at 12 m depth (see below), the added OMZ water was not immediately mixed throughout the mesocosm bag. Sampling took place every second day over a period of 50 days, and all variables were taken with an integrated water sampler (HydroBios, IWS) pre-programed to fill from 0 – 10 m depth and all samples consisted of this integrated samples from the upper 10 m. The samples were stored dark in cool boxes and brought back to the laboratory and processed right away. Sampling took place in the morning, and the samples were usually back in the laboratory around noon. Measured variables included inorganic nutrients, dissolved organic nutrients, extracellular enzyme activity: leucine aminopeptidase (LAP) and alkaline phosphatase activity (APA), and the phytoplankton and bacterial community composition.