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  • 1
    In: Journal of Applied Ecology, Wiley, Vol. 47, No. 4 ( 2010-06-07), p. 751-758
    Type of Medium: Online Resource
    ISSN: 0021-8901 , 1365-2664
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2010
    detail.hit.zdb_id: 2020408-5
    detail.hit.zdb_id: 410405-5
    SSG: 12
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  • 2
    In: Journal of Applied Ecology, Wiley, Vol. 54, No. 6 ( 2017-12), p. 1765-1775
    Abstract: The large‐scale and region‐specific movements of shortfin mako sharks underscore the need for close cooperation amongst western North Atlantic nations and implementation of regionally and seasonally specific management strategies. The movement patterns also provide baseline information, which could be used in spatially explicit stock assessment models. Identification of high‐use areas by shortfin mako sharks provides focal areas for quantifying interactions with fisheries. The high harvest rate observed in our fisheries‐independent tracking study raises questions about the true rate of fisheries mortality experienced by shortfin mako sharks, calling for a cautionary interpretation of past stock assessments used to determine management policy for this highly migratory species of conservation concern.
    Type of Medium: Online Resource
    ISSN: 0021-8901 , 1365-2664
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2017
    detail.hit.zdb_id: 2020408-5
    detail.hit.zdb_id: 410405-5
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Wiley ; 2015
    In:  Fish and Fisheries Vol. 16, No. 2 ( 2015-06), p. 310-328
    In: Fish and Fisheries, Wiley, Vol. 16, No. 2 ( 2015-06), p. 310-328
    Abstract: We present a framework for evaluating fisheries management plans comprehensively, both rebuilding plans and others. The framework includes a first rapid appraisal of the likelihood that the plan will result in management meeting its objectives, and guides subsequent quantitative analyses of potential weaknesses in the proposed plan. The framework includes four steps: (i) evaluating if a set of management objectives, if achieved, would result in a sustainable fishery, (ii) using qualitative analysis of a bio‐economic model to evaluate whether the set of stock management tactics might be capable of achieving the specified fisheries objectives, (iii) using empirical criteria derived from the literature to evaluate if other management measures in the plan related to the ecological, social or economic context of the fishery actually contribute to sustainability, and (iv) carrying out quantitative simulations to compare alternative implementation options. Generally, several management measures have to be combined to increase stock size without sacrificing the economic benefits to the fishers remaining in the fishery. We demonstrate application of the framework for evaluating the stock rebuilding plan for plaice ( Pleuronectes platessa ) and sole ( Solea solea ) in the North Sea and, the management measures currently in place for the roundnose grenadier ( Coryphaenoides rupestris ) stock exploited to the west of the British Isles.
    Type of Medium: Online Resource
    ISSN: 1467-2960 , 1467-2979
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2015
    detail.hit.zdb_id: 2024569-5
    SSG: 21,3
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  • 4
    In: Journal of Applied Ecology, Wiley, Vol. 55, No. 1 ( 2018-01), p. 415-425
    Abstract: Strategies for managing environmental harm under uncertainty are critical to achieving an informed risk‐weighted balance between environmental protection outcomes and development costs. Our study demonstrates the complexities of how communities respond to variable environmental exposure across a range of pressures in time and space, and the value of integrating probabilistic approaches in environmental management to account for that complexity and its associated uncertainty. Coral mortality was strongly related to a range of water quality exposure metrics associated with dredging activities, and regulatory thresholds based on water quality can provide a solid and cost‐effective foundation for protecting corals during dredging. The probabilistic dose – response relationships and thresholds presented here are the first to be derived from in situ data using dredging related coral mortality and represent a step forward in integrating formal decision science approaches into environmental management.
    Type of Medium: Online Resource
    ISSN: 0021-8901 , 1365-2664
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2020408-5
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  • 5
    In: Fish and Fisheries, Wiley, Vol. 22, No. 6 ( 2021-11), p. 1167-1186
    Abstract: Management strategy evaluation (MSE) is the state‐of‐the‐art approach for testing and comparing management strategies in a way that accounts for multiple sources of uncertainty (e.g. monitoring, estimation, and implementation). Management strategy evaluation can help identify management strategies that are robust to uncertainty about the life history of the target species and its relationship to other species in the food web. Small pelagic fish (e.g. anchovy, herring and sardine) fulfil an important ecological role in marine food webs and present challenges to the use of MSE and other simulation‐based evaluation approaches. This is due to considerable stochastic variation in their ecology and life history, which leads to substantial observation and process uncertainty. Here, we summarize the current state of MSE for small pelagic fishes worldwide. We leverage expert input from ecologists and modellers to draw attention to sources of process and observation uncertainty for small pelagic species, providing examples from geographical regions where these species are ecologically, economically and culturally important. Temporal variation in recruitment and other life‐history rates, spatial structure and movement, and species interactions are key considerations for small pelagic fishes. We discuss tools for building these into the MSE process, with examples from existing fisheries. We argue that model complexity should be informed by management priorities and whether ecosystem information will be used to generate dynamics or to inform reference points. We recommend that our list of considerations be used in the initial phases of the MSE process for small pelagic fishes or to build complexity on existing single‐species models.
    Type of Medium: Online Resource
    ISSN: 1467-2960 , 1467-2979
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
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    SSG: 21,3
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  • 6
    In: Ecology and Evolution, Wiley, Vol. 10, No. 4 ( 2020-02), p. 1929-1937
    Abstract: Effective population size ( N e ) is a key parameter of population genetics. However, N e remains challenging to estimate for natural populations as several factors are likely to bias estimates. These factors include sampling design, sequencing method, and data filtering. One issue inherent to the restriction site‐associated DNA sequencing (RADseq) protocol is missing data and SNP selection criteria (e.g., minimum minor allele frequency, number of SNPs). To evaluate the potential impact of SNP selection criteria on N e estimates (Linkage Disequilibrium method) we used RADseq data for a nonmodel species, the thornback ray. In this data set, the inbreeding coefficient F IS was positively correlated with the amount of missing data, implying data were missing nonrandomly. The precision of N e estimates decreased with the number of SNPs. Mean N e estimates (averaged across 50 random data sets with2000 SNPs) ranged between 237 and 1784. Increasing the percentage of missing data from 25% to 50% increased N e estimates between 82% and 120%, while increasing the minor allele frequency (MAF) threshold from 0.01 to 0.1 decreased estimates between 71% and 75%. Considering these effects is important when interpreting RADseq data‐derived estimates of effective population size in empirical studies.
    Type of Medium: Online Resource
    ISSN: 2045-7758 , 2045-7758
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2635675-2
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  • 7
    In: Environmental DNA, Wiley, Vol. 4, No. 4 ( 2022-07), p. 920-939
    Abstract: The global biodiversity crisis from anthropogenic activities significantly weakens the functioning of marine ecosystems and jeopardizes their ecosystem services. Increasing monitoring of marine ecosystems is crucial to understand the breadth of the changes in biodiversity, ecosystem functioning and propose more effective conservation strategies. Such strategies should not only focus on maximizing the number of species (i.e., taxonomic diversity) but also the diversity of phylogenetic histories and ecological functions within communities. To support future conservation decisions, multicomponent biodiversity monitoring can be combined with high‐throughput species assemblage detection methods such as environmental DNA (eDNA) metabarcoding. Here, we used eDNA to assess fish biodiversity along the coast of southern Brittany (France, Iroise Sea). We filtered surface marine water from 17 sampling stations and applied an eDNA metabarcoding approach targeting Actinopterygii and Elasmobranchii taxa. We documented three complementary biodiversity components—taxonomic, phylogenetic, and functional diversity—and three diversity facets—richness, divergence and regularity. We identified a north/south contrast with higher diversity for the three facets of the biodiversity components in the northern part of the study area. The northern communities showed higher species richness, stronger phylogenetic overdispersion and lower functional clustering compared to the ones in the southern part, due to the higher diversity of habitats (reefs, rocky shores) and restricted access for fishing. Moreover, we also detected a higher level of taxonomic, phylogenetic, and functional uniqueness in many offshore stations compared to more coastal ones, with the presence of species typically living at greater depths ( 〉  300 m), which suggests an influence of hydrodynamic structures and currents on eDNA dispersion and hence sample composition. eDNA metabarcoding can, therefore, be used as an efficient sampling method to reveal fine‐scale community compositions and in combination with functional and phylogenetic information to document multicomponent biodiversity gradients in coastal marine systems.
    Type of Medium: Online Resource
    ISSN: 2637-4943 , 2637-4943
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 3001165-6
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  • 8
    In: Molecular Ecology Resources, Wiley, Vol. 20, No. 6 ( 2020-11), p. 1610-1619
    Abstract: Sex‐determining modes remain unknown in numerous species, notably in fishes, in which a variety of modalities have been reported. Additionally, noninvasive individual sexing is problematic for species without external sex attributes or for early life stages, requiring cytogenetic or molecular analyses when sex chromosomes or sex‐linked markers have been characterized. Genomics now provide a means to achieve this. Here, we review common sex‐determination systems and corresponding statistical methods for identifying sex‐linked genetic markers and their use for sex assignment, focusing on single nucleotide polymorphism (SNP) markers derived from reduced representation sequencing methods. We demonstrate the dependence of expected sex assignment error on the number of sex‐linked SNPs and minor allele frequency. The application of three methods was made here: (a) identification of heterozygote excess in one sex, (b) F ST outlier analysis between the two sexes and (c) neuronal net modelling. These methods were applied to a large SNP data set (4604 SNPs) for 1680 thornback rays ( Raja clavata ). Using method (a), nineteen putative sex‐linked SNPs were identified. Comparison with the reference genome of a related species ( Amblyraja radiata ) indicated that all 19 SNPs are probably located on the same chromosome. These results suggest that thornback ray has a XX/XY sex‐determination system. Method (b) identified eight SNPs probably located on different chromosomes. Method (a) led to the lowest sex assignment error among the three methods (4.2% error for females and 3.7% for males).
    Type of Medium: Online Resource
    ISSN: 1755-098X , 1755-0998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
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  • 9
    In: Journal of Applied Ecology, Wiley, Vol. 54, No. 3 ( 2017-06), p. 914-925
    Abstract: Causes of non‐intentional mortality may pose conservation challenges for long‐lived, migratory species. Recovery attempts for Atlantic sturgeon Acipenser oxyrinchus oxyrinchus populations in the USA have mainly involved closures of targeted fishing, but bycatch mortality from fisheries targeting other species remains a significant obstacle. Natural and fishing mortality levels are highly uncertain and difficult to separate, but quantifying spatial and temporal patterns of movements and total mortality can directly inform management policies regarding fishing activity that affects sturgeon. Subadult sturgeon were tagged with acoustic transmitters to track their movements with receivers deployed in active fishing areas within the New York Bight. Multi‐state mark–recapture models were used to quantify seasonal patterns in survival and migration while accounting for detection probabilities of tagged fish. Movement patterns of sturgeon were highly variable among seasons along the Long Island Coast, with frequent south‐westward movements during the increase in sea surface temperature in spring. North‐eastward movements were most pronounced during winter, when temperatures were lowest. Sturgeon were less common along coastal Long Island during summer. Larger fish transitioned among strata more frequently, but also had slightly lower survival than smaller fish, which may result from selectivity for larger individuals caught incidentally in bottom trawl or gillnet fisheries. Weekly total mortality rates, including both natural and fishing mortality, averaged 0·24%. Highest weekly survival rates were observed during periods of decreasing sea surface temperature in autumn and winter, while lowest survival was observed during periods of increasing temperature in spring and summer while sturgeon migrated through areas of known bycatch. Policy implications . Movement and survival patterns of Atlantic sturgeon suggest that late spring, coinciding with periods of ocean bycatch in fisheries along the coast of Long Island, is a particularly sensitive period for Atlantic sturgeon. Conservation efforts could target these few weeks using real‐time observations from acoustic telemetry and remote sensing technologies to implement in‐season fishery closures, thereby reducing incidental mortality of Atlantic sturgeon. Such bycatch management measures would aid in recovery attempts of a long‐lived, migratory population with endangered status.
    Type of Medium: Online Resource
    ISSN: 0021-8901 , 1365-2664
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2017
    detail.hit.zdb_id: 2020408-5
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  • 10
    In: Journal of Applied Ecology, Wiley, Vol. 55, No. 3 ( 2018-05), p. 1102-1113
    Abstract: Periodically harvested closures ( PHC s) can provide short‐term fisheries benefits. Use of the analytical framework presented here will assist in determining long‐term fisheries and conservation benefits. We recommend PHC s be closed to fishing for as long as possible, be as large as possible, that compliance be encouraged via community engagement and enforcement, and strict deadlines/goals for harvesting set to prevent overfishing.
    Type of Medium: Online Resource
    ISSN: 0021-8901 , 1365-2664
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2020408-5
    detail.hit.zdb_id: 410405-5
    SSG: 12
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