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  • Blackwell Publishing Ltd  (8)
Publikationsart
Erscheinungszeitraum
  • 1
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: The hydrothermal-vent gastropod Alviniconcha hessleri from the Alice Springs deep-sea hydrothermal field in the Mariana Back-Arc Basin in the Western Pacific houses an intracellular bacterial endosymbiont in its gill. Although enzymatic analysis has revealed that the endosymbiont is a sulfur-oxidizing chemoautotroph using the Calvin–Benson cycle for the fixation of carbon dioxide, the phylogenetic affiliation of, and the trophic relationship of A. hessleri with, the chemoautotrophic endosymbiont remains undetermined. A single 16S rRNA gene sequence was obtained from the DNA extract of the gill, and phylogenetic analysis placed the source organism within the lineage of the gamma subdivision of the Proteobacteria that consists of many chemoautotrophic endosymbionts of marine invertebrates. Fluorescence in situ hybridization analysis showed the bacterium densely colonizing the gill filaments. The fatty acid profile of the symbiont-free mantle contains the high level of the 16:1 fatty acid originating from the endosymbiont, which indicates that the endosymbiont cells are digested by, and incorporated into, the host. Compound-specific carbon isotopic analysis revealed that fatty acids from the gastropod tissues are all 13C-depleted relative to the gastropod biomass. This fractionation pattern is consistent with chemoautotrophy based on the Calvin–Benson cycle and subsequent fatty-acid biosynthesis from 13C-depleted acetyl coenzyme A. The results from the present study are clearly different from those from our previous study for A. aff. hessleri from the Indian Ocean that harbors a chemoautotrophic endosymbiont belonging to the epsilon subdivision of the Proteobacteria, which mediates the reductive tricarboxylic acid cycle for carbon fixation. Thus, it is concluded here that two lineages of chemoautotrophic bacteria, phylogenetically distinct at the subdivision level, occur as the primary endosymbiont in one host-animal type, which is unknown for the other metazoans.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 2
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: We report the successful cultivation and partial characterization of novel members of ɛ-Proteobacteria, which have long been recognized solely as genetic signatures of small subunit ribosomal RNA genes (rDNA) from a variety of habitats occurring in deep-sea hydrothermal fields. A newly designed microhabitat designated ‘in situ colonization system’ was used for enrichment. Based on phylogenetic analysis of the rDNA of the isolates, most of these represent the first cultivated members harboring previously uncultivated phylotypes classified into the Uncultivated ɛ-Proteobacteria Groups A, B, F and G, as well as some novel members of Group D. Preliminary characterization of the isolates indicates that all are mesophilic or thermophilic chemolithoautotrophs using H2 or reduced sulfur compounds (elemental sulfur or thiosulfate) as an electron donor and O2, nitrate or elemental sulfur as an electron acceptor. The successful cultivation will enable the subsequent characterization of physiological properties and ecological impacts of a diversity of ɛ-Proteobacteria in the deep-sea hydrothermal environments.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 3
    ISSN: 1574-6941
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: The Cascadia Margin is a region of active accretionary tectonics characterized by high methane flux accompanied by the formation of sedimentary gas hydrates, carbonate nodules, and carbonate pavements. Several sediment cores have been obtained from this region by the Ocean Drilling Project (ODP), and in some cases the boreholes have been sealed off, serving as sites for long-term observatories. We characterized geochemical parameters and diversity of Archaea in one such “legacy” borehole, ODP site 892b, as well as in bottom water immediately above the borehole and in two nearby sediments. The methane concentrations in the samples varied over five orders of magnitude, from 25 to 35 nM in the bottom water to 1.4 mM in one of the sediment samples. Despite these differences, the Archaeal community in all samples was dominated by gene sequences related to the methanogenic Archaea, a finding that correlates with studies of other environments characterized by high methane flux. The archaeal phylotype richness in borehole ODP 892b was limited to two phylotypes; one specifically related to Methanosaeta spp., the other to the anaerobic methane oxidizing ANME-1 group. Although some similar groups were observed in nearby sediment and seawater samples, their archaeal phylotype richness was significantly higher than in the borehole. The possible presence of a dynamic microbial community in the Cascadia Margin sub-surface and its potential roles in methanogenesis, anaerobic oxidation of methane, and authigenic precipitation of carbonate in the Cascadia Margin are discussed.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 4
    ISSN: 1574-6941
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: During the late summer to early fall, Horsetooth Reservoir in Fort Collins, CO, USA is fully stratified and exhibits seasonally high fluxes of iron, manganese, and metal-rich particles into the water column. Particles were collected from the mid-region of the hypolimnion and examined for metal content. Nucleic acids extracted from the particles were used to construct bacterial and archaeal 16S rDNA clone libraries. Surprisingly, 50% of cloned bacterial genes were closely related to a coherent cluster within Candidate Division OP10. To our knowledge, this is the first report of an environmental gene clone library that exhibits a dominance of OP10-related clones. Several other sequences, many with long branch lengths, clustered within eight separate bacterial divisions and the diatom chloroplasts. Most of these divisions are commonly found in freshwater environments. However, gene sequences from characterized metal-oxidizing or metal-reducing bacteria were not identified. The archaeal gene clone libraries contained diverse sequences, most with close homology to previously characterized gene clones of methanogens or uncultivated Crenarchaeota from soil and lacustrine environments. This study identified a unique environment where OP10 bacteria are potentially abundant. Furthermore, we demonstrated that the metal-rich particles from this reservoir support a diverse and interesting community of microorganisms.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 5
    Digitale Medien
    Digitale Medien
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 139 (1996), S. 0 
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: Abstract Cytoplasmic inclusions surrounded by a bilayer membrane were seen in thin sections, negatively stained and freeze-fractured preparations of Shewanella putrefaciens. Cells harvested from the late exponential and early stationary phase showed a higher number of these vesicles than bacteria isolated from early exponential or late stationary phase. Chemical dyes for polyphosphate or poly-β-hydroxybutyrate did not stain the material enclosed within these vesicles. Elemental analysis of the material indicated that the content was organic in nature and might be a protein. HPLC analysis of the material showed that it was probably not a carbon source, nor an electron acceptor used by S. putrefaciens.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 6
    Digitale Medien
    Digitale Medien
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 73 (1990), S. 0 
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: Abstract Ligh emitted by the bioluminescent bacterium, Xenorhabdus luminescens (isolated from a nematode host), can be measured to monitor reductions of these bacteria in the presence of phagotrophs. X. luminescens is relatively large (0.6 ? 3 μm), but comparable in size to many cyanobacteria. We used the light emission method to examine phagotroph feeding on X. luminescens using uni-specific cultures of two chrysomonads, Ochromonas sp. and Spulemma sp. From light decay rates in control and experimental vials, we computed an apparent filtration rate (FR); then, for a concentration (C) of 1 ? 106 bacteria ml−1, we estimated capture rate (CR) as FR ? C. The Ochromonas sp. did not ingest the bacterium. The maximum estimated FR for Spumella, observed at 6.0 ? 103 flagellates ml−1 (medium density), was 0.37 ml h−1, for a volume-specific clearance rate (FR/cell volume) of 7.9 ? 105 h−1 and a CR of 62 bacteria ? flagellate−1 h−1. Video microscopy indicated these were accurate estimates of capture rates.Microscopic counts were used to monitor growth of a flagellate, Spumella sp., on X. luminescens as the sole food supply. The flagellate doulbed in number every 3.2, while consuming bacteria at a rate of 23 bacteria flagellate−1 h−1. The Spumella grazed the bacteria to a minimum of 5 ? 105 cells ml−1, a concentration comparable to observed field densities of other bacteria.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
    Digitale Medien
    Digitale Medien
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 53 (1988), S. 0 
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Notizen: Abstract Cultures of the primary form of Xenorhabdus luminescens strain Hm gave rise to secondary forms after prolonged static incubation in two broth media. The secondary forms were deficient in pigmentation and extracellular antibiotic, protease and lipase activities, and were about 100-fold less luminous than the primary form in vivo. Secondary forms isolated on two separate occasions from two different media were identical in their deficiencies. Cultures of the secondary form in defined broth media produced no detectable secondary metabolites, unlike the primary form, and grew more rapidly than the primary form. A protocol for screening primary cultures of X. luminescens for secondary forms is presented.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 8
    Digitale Medien
    Digitale Medien
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 19 (1983), S. 0 
    ISSN: 1574-6968
    Quelle: Blackwell Publishing Journal Backfiles 1879-2005
    Thema: Biologie
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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