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  • 2010-2014  (101)
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  • 1
    Online-Ressource
    Online-Ressource
    Cambridge :Elsevier Science & Technology,
    Schlagwort(e): Lipids -- Analysis. ; Electronic books.
    Beschreibung / Inhaltsverzeichnis: This well-known and highly successful book was first published in 1973 and has been completely re-written in subsequent editions (published in 1982 and 2003). This new Fourth Edition has become necessary because of the pace of developments in mass spectrometry of intact lipids, which has given recognition of lipid analysis and 'lipidomics' as a distinct science. To bring the book up to date with these developments, author William W. Christie is joined by co-author Xianlin Han. Although devoting considerable space to mass spectrometry and lipidomics, Lipid analysis remains a practical guide, in one volume, to the complexities of the analysis of lipids. As in past editions, it is designed to act as a primary source, of value at the laboratory bench rather than residing on a library shelf.Lipid analysis deals with the isolation, separation, identification and structural analysis of glycerolipids, including triacylglycerols, phospholipids, sphingolipids, and the various hydrolysis products of these. The chapters follow a logical sequence from the extraction of lipids to the isolation and characterization of particular lipid classes and of molecular species of each, and to the mass spectrometric analysis of lipids and lipidomics.The new influence of mass spectrometry is due mainly to the development of electrospray ionization (ESI) and matrix-assisted laser desorption/ionization (MALDI). Most emphasis in this book is placed on ESI, which is enabling structural characterization of different lipid classes and the identification of novel lipids and their molecular species.
    Materialart: Online-Ressource
    Seiten: 1 online resource (447 pages)
    Ausgabe: 4th ed.
    ISBN: 9780857097866
    Serie: Oily Press Lipid Library Series ; v.24
    DDC: 547.77046
    Sprache: Englisch
    Anmerkung: Cover -- Lipid analysis: ISOLATION, SEPARATION, IDENTIFICATION AND LIPIDOMIC ANALYSIS -- Copyright -- Preface -- Contents -- List of Abbreviations -- PART 1 Introducing lipids and their analysis -- CHAPTER 1 Lipids: their structures and occurrence -- A. Introduction -- B. Definitions -- C. Fatty acids -- D. The principal simple lipids and complex glycerolipids of animal and plant tissues -- E. Sphingolipids -- CHAPTER 2 Chromatographic analysis of lipids: general principles -- A. A statement of the problem -- B. The theory of chromatography -- C. Modes of separation in chromatography -- D. Gas chromatography -- E. High-performance liquid chromatography -- F. Thin-layer chromatography -- G. Supercritical fluid chromatography -- H. Mass spectrometry -- I. Quality control -- CHAPTER 3 Lipid extraction, storage and sample handling -- A. Introduction -- B. Some practical considerations -- C. The principles of solvent extraction procedures -- D. Recommended procedures -- PART 2 Chromatographic separation and analysis of individual lipid classes -- CHAPTER 4 Analysis of simple lipid classes -- A. Preliminary fractionation of lipid extracts -- B. Low-pressure column chromatography -- C. Thin-layer chromatography (TLC) -- D. High-performance liquid chromatography -- E. Determination of lipid profiles by gas chromatography -- F. Analysis of specific simple lipid classes -- G. Oxidized fats and oils -- CHAPTER 5 Chromatographic analysis of phospholipids and glycosyldiacylglycerols -- A. Introduction -- B. Separation by low-pressure column chromatography -- C. Thin-layer chromatography -- D. High-performance liquid chromatography -- E. Quantification of complex lipids separated by chromatography -- F. Phosphorus nuclear magnetic resonance spectroscopy -- G. Some specific problems in the analysis of complex glycerolipids. , CHAPTER 6 Chromatographic analysis of sphingolipids -- A. Introduction -- B. Preparation of sphingolipid-rich extracts -- C. Separation of neutral glycosphingolipid classes -- D. Separation of gangliosides -- E. Analysis of the hydrolysis products of glycosphingolipids -- F. Some miscellaneous glycolipids -- PART 3 The analysis of fatty acids -- CHAPTER 7 Preparation of derivatives of fatty acids -- A. Introduction -- B. Hydrolysis (saponification) of lipids -- C. The preparation of methyl and other esters of fatty acids -- D. Preparation of derivatives for mass spectrometry -- E. Derivatives of double bonds -- F. Derivatives of hydroxyl groups -- CHAPTER 8 Gas chromatographic analysis of fatty acid derivatives -- A. Introduction -- B. Columns and liquid phases -- C. Provisional identification using standards or retention time relationships -- D. Separation of the common fatty acids of plants and animals -- E. Positional and geometric isomers of unsaturated fatty acids -- F. Some applications to less common fatty acids -- G. Quantitative estimation of fatty acid compositions -- CHAPTER 9 Isolation of fatty acids and identification by spectroscopic and related techniques -- A. Introduction -- B. Simple concentration techniques -- C. Silver ion chromatography -- D. Reversed-phase high-performance liquid chromatography -- E. Adsorption chromatography -- F. Identification of fatty acids by chemical degradative procedures -- G. Spectroscopy of fatty acids -- H. Mass spectrometry of fatty acids -- PART 4 Chromatographic analysis of molecular species of lipids -- CHAPTER 10 Molecular species of triacylglycerols, diacylglycerols derived from complex lipids, and related lipids -- A. The nature of the problem -- B. Separation of triacylglycerol species -- C. Molecular species of monoand diacylglycerols -- D. Other simple lipids. , CHAPTER 11 Chromatographic analysis of molecular species of intact phospholipids and glycolipids -- A. Introduction -- B. High-performance liquid chromatography separation of intact phospholipids -- C. Glycoglycerolipids -- D. Glycosphingolipids -- CHAPTER 12 Positional distributions of fatty acids in glycerolipids -- A. Introduction -- B. Positional distribution of fatty acids in triacylglycerols -- C. Enzymatic hydrolysis of complex lipids -- PART 5 Mass spectrometric analysis of lipids in lipidomics -- CHAPTER 13 Introduction to mass spectrometric analysis of lipids in lipidomics -- A. Lipidomics -- B. Brief history of mass spectrometry for lipid analysis -- C. Modern developments in mass spectrometry for lipid analysis -- D. Tandem mass spectrometry modes useful for lipid analyses in lipidomics -- E. Impact of recent developments related to mass spectrometric analyses of lipids in lipidomics -- CHAPTER 14 Characterization of lipids by electrospray ionization mass spectrometry -- A. Introduction -- B. Characterization of individual classes of phospholipids -- C. Characterization of individual classes of sphingolipids -- D. Characterization of simple glycerolipids and glycosyldiacylglycerols -- CHAPTER 15 Practical identification of individual lipid species in lipid extracts of biological samples -- A. Introduction -- B. LC-MS based identification of individual molecular species of lipid classes -- C. Identification of individual molecular species of lipid classes by shotgun lipidomics -- D. Location of double bonds in individual lipid species -- CHAPTER 16 Quantification of lipid molecular species by electrospray ionization mass spectrometry -- A. Introduction -- B. Internal standards and normalization -- C. Quantification of lipids by HPLC-coupled ESI-MS and ESI-MS/MS -- D. Quantification of lipids after direct infusion. , E. Concerns associated with quantification -- F. Conclusions -- References -- Index.
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  • 2
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    In:  [Talk] In: The Lübeck Retreat, Collaborative Research SFB 574 Volatiles and Fluids in Subduction Zones: Climate Feedback and Trigger Mechanisms for Natural Disasters, 23.-25.05.2012, Lübeck . The Lübeck Retreat: final colloquium of SFB 574; May 23-25, 2012: program & abstracts ; p. 16 .
    Publikationsdatum: 2019-09-23
    Beschreibung: Focused gas and fluid flow of cold seep ecosystems is often characterized by carbonate precipitation processes fueled by hydrocarbon-rich fluids and microbial activity. In various geological settings the seabed leakage is methane dominated and accompanied by the formation of long-lasting hard substrates and open channels. These fluid pathways are connecting deeper levels of the sediment column with the bottom water, bridging the diffusive processes at the sediment/water-interface. Understanding and quantifying feedback mechanisms between hydrocarbon-sources, ocean chemistry, and climate requires detailed data about the dynamics of seafloor methane emanation throughout geological time. Authigenic carbonates from these ecosystems represent in many cases unique archives of marine methane emanation by their geobiological, geochemical, mineralogical, and structural inventory. Precise and high resolution geochronology of these archives provides new insights into the rate and duration of precipitation processes, the related microbial activity and a base for the reconstruction of paleoactivity of natural seepage. The actual data set of our compilatory study is spanning a wide range in space and time. It covers different geological circum-Pacific settings (South China Sea, Costa Rica & Nicaragua, Chile, New Zealand), including more than 200 thousand years old archives (Hydrate Ridge, off Oregon) and recent methane-related carbonates from Black Sea and Mediterranean Sea. Special emphasis is actually given to new insights into growth structures, emplacement processes, mineralogy and high resolution geochemistry of mud mound and escarpment related carbonates from the Central American Forearc as well as to new findings on seep systems off Chile (cruise Sonne 210) applying a ROV-operated diamond chain saw sampling system. In a rather complex case study carbonate drill cores decipher the late stage evolution of mound growth and related methane enriched fluid emanation during the last 70 000 years off Costa Rica. A broad range in &13C from -22 to -36‰ (mounds) and -43 to -56‰ (escarpment) is covered, reflecting different hydrocarbon sources and/or varying fluid/seawater-ratios. Whereas the &18O signatures indicate a systematic variation between 3.8 - 5.3‰ (mounds) and 4.2 - 5.1‰ (escarpment) in close correlation with their ages (U-Th geochronology [1]) and the record of seawater evolution. Combining high resolution observations of growth structures (fluorescence microscopy) and analyses of Cl-S-C distribution pattern (electron microprobe) decipher multiple phases of carbonate precipitation separated by micrometer scaled layers of residual organic matter (e.g. 50 alternations on 3 mm). The latter are interpreted to be attached onto crystal surfaces during phases of rather stagnant or low fluid flow, respectively. On long time scales, the circum-Pacific data set indicates sea level decrease as an important enhancement factor for focused fluid flow via increasing pore water buoyancy, destabilization of gas hydrates and related fluxes from underlying free gas deposits upon hydraulic pressure release. Data from tectonically highly active settings imply structural changes as major control on initiation and position of cold seeps and their activation on short time scales [2, 3]. References: [1] Hammerich et al. (2007) Terra Nostra. [2] Kutterolf et al. (2008) Geology, doi: 10.1130/G24806A [3] Liebetrau et al. (2010) MG, doi:10.1016/j.margeo.2010.01.003.〈/p〉
    Materialart: Conference or Workshop Item , NonPeerReviewed
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  • 3
    Publikationsdatum: 2012-02-23
    Beschreibung: Cold seep ecosystems are often characterized by carbonate precipitation processes fueled by methane-rich fluids and microbial activity. Understanding and quantifying feedback mechanisms between methane sources, ocean chemistry, and climate requires detailed data about the dynamics of seafloor methane emanation throughout geological time. Carbonates from these ecosystems provide unique archives of marine methane emanation by their geobiological, geochemical, mineralogical, and structural inventory. Precise and high resolution geochronology of these archives provides new insights into the rate and duration of precipitation processes and the related microbial activity. In this compilatory study large carbonate samples from very different cold seep settings were investigated for the time scales of their formation and their specific precipitation environment. Beside new insights into growth structures, emplacement processes and initial approaches on high resolution geochemistry and biomarker analyses [1], special emphasis was given to the geochronological identification of paleo-seep-activity phases. The actual data set is spanning a wide range in space and time. It covers circum-Pacific settings (South China Sea, Costa Rica & Nicaragua, New Zealand), including more than 200 thousand years old archives ( Hydrate Ridge, off Oregon), and almost recent methane-related carbonates from Black Sea and Mediterranean Sea. On long time scales, the data indicates sea level decrease as an important enhancement factor for focused methane flux via destabilization of underlying gas hydrates upon hydraulic pressure release. Data from tectonically highly active settings imply structural changes as major control on initiation and position of cold seeps and their activation on short time scales [2, 3]. [1] Leefmann et al. (2008) BG. [2] Kutterolf et al. (2008) Geology, doi: 10.1130/G24806A [3] Liebetrau et al. (2010) MG, doi:10.1016/j.margeo.2010.01.003
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  • 4
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    In:  [Talk] In: AGU Western Pacific Geophysics Meeting, 22.06.2010, Taipei, Taiwan .
    Publikationsdatum: 2012-02-23
    Materialart: Conference or Workshop Item , NonPeerReviewed
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  • 5
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    In:  [Talk] In: 10th International Conference on Gas in Marine Sediments, 09.09.2010, Listvaynka, Irkutsk (Lake Baikal), Russia .
    Publikationsdatum: 2012-02-23
    Materialart: Conference or Workshop Item , NonPeerReviewed
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  • 6
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    In:  [Talk] In: Joint Symposium / Gangzhou Marine Geological Survey, 23.02.2010, Guangzhou, China .
    Publikationsdatum: 2012-02-23
    Materialart: Conference or Workshop Item , NonPeerReviewed
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  • 7
    Publikationsdatum: 2014-02-25
    Beschreibung: The human immunodeficiency virus type 1 (HIV-1)-encoded virion infectivity factor (Vif) is required to inactivate the host restriction factor APOBEC3 by engaging Cullin 5 (Cul5)-RING ubiquitin ligase (CRL5). Core binding factor beta (CBF-β) is a novel regulator of Vif-CRL5 function; as yet, its mechanism of regulation remains unclear. In the present study, we demonstrate that CBF-β promotion of Vif-CRL5 assembly is independent of its influence on Vif stability and is also a conserved feature of primate lentiviral Vif proteins. Furthermore, CBF-β is critical for the formation of the Vif-ElonginB/ElonginC-Cul5 core E3 ubiquitin ligase complex in vitro . CBF-β from diverse vertebrate species supported HIV-1 Vif function, indicating the conserved nature of Vif–CBF-β interfaces. Considering the importance of the interaction between Vif and CBF-β in viral CRL5 function, disrupting this interaction represents an attractive pharmacological intervention against HIV-1. IMPORTANCE HIV-1 encodes virion infectivity factor (Vif) to inactivate its host's antiviral APOBEC3 proteins. Vif triggers APOBEC3 degradation by forming Vif-Cullin 5 (Cul5)-RING ubiquitin ligase (CRL5). Core binding factor beta (CBF-β) is a novel regulator of Vif-CRL5 function whose mechanism of regulation remains poorly defined. In the present study, we demonstrate that the promotion of Vif-CRL5 assembly by CBF-β can be separated from its influence on Vif stability. The promotion of Vif-CRL5 assembly, but not the influence on Vif stability, is conserved among primate lentiviral Vif proteins: we found that CBF-β from diverse vertebrate species supported HIV-1 Vif function. Considering the importance of the interaction between Vif and CBF-β in viral CRL5 function and HIV-1 replication, disrupting this interaction is an attractive strategy against HIV-1.
    Print ISSN: 0022-538X
    Digitale ISSN: 1098-5514
    Thema: Medizin
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  • 8
    Publikationsdatum: 2014-02-05
    Beschreibung: Suppressor/Enhancer of Lin-12-like (Sel1L) is an adaptor protein for the E3 ligase hydroxymethylglutaryl reductase degradation protein 1 (Hrd1) involved in endoplasmic reticulum-associated degradation (ERAD). Sel1L’s physiological importance in mammalian ERAD, however, remains to be established. Here, using the inducible Sel1L knockout mouse and cell models, we show that Sel1L is...
    Print ISSN: 0027-8424
    Digitale ISSN: 1091-6490
    Thema: Biologie , Medizin , Allgemeine Naturwissenschaft
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  • 9
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    The American Society for Biochemistry and Molecular Biology (ASBMB)
    Publikationsdatum: 2013-07-06
    Beschreibung: SET8 (SET domain containing 8) is a histone H4 lysine 20 (H4K20)-specific monomethyltransferase in higher eukaryotes that exerts diverse functions in transcription regulation, DNA repair, tumor metastasis, and genome integrity. The activity of SET8 is tightly controlled during cell cycle through post-translational modifications, including ubiquitination, phosphorylation, and sumoylation. However, how the expression of SET8 is regulated is not fully understood. Here, we report that microRNA-7 is a negative regulator of SET8. We demonstrated that microRNA-7 inhibits H4K20 monomethylation and suppresses epithelial-mesenchymal transition and the invasive potential of breast cancer cells. We showed that microRNA-7 promotes spontaneous DNA damages and sensitizes cells to induced DNA damages. Our experiments provide a molecular mechanism for the regulation of SET8 and extend the biological function of microRNA-7 to DNA damage response, supporting the pursuit of microRNA-7 as a potential target for breast cancer intervention.
    Print ISSN: 0021-9258
    Digitale ISSN: 1083-351X
    Thema: Biologie , Chemie und Pharmazie
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  • 10
    Publikationsdatum: 2013-07-02
    Beschreibung: In this study, we reported millepachine (MIL), a novel chalcone compound for the first time isolated from Millettia pachycarpa Benth (Leguminosae), induced cell cycle arrest and apoptosis in human hepatocarcinoma cells in vitro and in vivo . In in vitro screening experiments, MIL showed strong antiproliferation activity in several human cancer cell lines, especially in HepG2 cells with an IC 50 of 1.51 µM. Therefore, we chose HepG2 and SK-HEP-1 cells to study MIL’s antitumor mechanism. Flow cytometry showed that MIL induced a G 2 /M arrest and apoptosis in a dose-dependent manner. Western blot demonstrated that MIL-induced G 2 /M arrest was correlated with the inhibition of cyclin-dependent kinase 1 activity, including a remarkable decrease in cell division cycle (cdc) 2 synthesis, the accumulation of phosphorylated-Thr14 and decrease of phosphorylation at Thr161 of cdc2. This effect was associated with the downregulation of cdc25C and upmodulation of checkpoint kinase 2 in response to DNA damage. MIL also activated caspase 9 and caspase 3, and significantly increased the ratio of Bax/Bcl-2 and stimulated the release of cytochrome c into cytosol, suggesting MIL induced apoptosis via mitochondrial apoptotic pathway. Associated with those effects, MIL also induced the generation of reactive oxygen species. In HepG2 tumor-bearing mice models, MIL remarkably and dose dependently inhibited tumor growth. Treatment of mice with MIL (20mg/kg intravenous [i.v.]) caused more than 65% tumor inhibition without cardiac damage compared with 47.57% tumor reduction by 5mg/kg i.v. doxorubicin with significant cardiac damage. These effects suggested that MIL and its easily modified structural derivative might be a potential lead compound for antitumor drug.
    Print ISSN: 0143-3334
    Digitale ISSN: 1460-2180
    Thema: Medizin
    Publiziert von Oxford University Press
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