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  • 1
    ISSN: 1572-9737
    Schlagwort(e): Bicyclus anynana ; butterfly ; pedigree ; frequency-dependent selection ; inbreeding depression
    Quelle: Springer Online Journal Archives 1860-2000
    Thema: Biologie
    Notizen: Abstract The effect of small population size and gene flow on the rate ofinbreeding and loss in fitness in Bicyclus anynana populationswas quantified by means of a pedigree analysis. Laboratorymetapopulations each consisted of four subpopulations with breeding sizeof N = 6 or N = 12 and migration rate of m = 0 or m= 0.33. Pedigrees were established by individually marking about35,000 butterflies. The increase in inbreeding coefficients(F-coefficients) over time was compared to that of simulated populationswith similar N and m. In the seventh generation, the level of inbreedingin larger subpopulations did not deviate significantly from the expectedvalues, but smaller subpopulations were less inbred than expected.Individuals in the small populations still showed considerableinbreeding depression, indicating that only a small proportion of therecessive deleterious alleles had been purged by selection. Two opposingprocesses potentially affected the rate of inbreeding and fitness: (1)Inbreeding depression increased the variance in family size and reducedthe effective population size. This will accelerate the rate ofinbreeding and is expected to selectively purge deleterious recessivealleles. (2) Variance in reproductive success of families was reducedbecause individuals which had a large number of siblings in thepopulation were more likely to mate with a full-sib than individualswith a smaller number of siblings. Subsequent inbreeding depressionreduced the number of viable offspring produced by these full-sibmatings. As a consequence, natural selection purged only some of thedeleterious alleles from the butterfly populations during sevengenerations with inbreeding. These findings emphasise the potentialproblems of using only small numbers of breeding individuals (N≤10) incaptive populations for conservation purposes.
    Materialart: Digitale Medien
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 2
    Publikationsdatum: 2021-01-08
    Beschreibung: The genome of the cold-adapted diatom Fragilariopsis cylindrus is characterized by highly diverged haplotypes that intersperse its homozygous genome. Here, we describe how a combination of PacBio DNA and Illumina RNA sequencing can be used to resolve this complex genomic landscape locally into the highly diverged haplotypes, and how to map various environmentally controlled transcripts onto individual haplotypes. We assembled PacBio sequence data with the FALCON assembler and created a haplotype resolved annotation of the assembly using annotations of a Sanger sequenced F. cylindrus genome. RNA-seq datasets from six different growth conditions were used to resolve allele-specifc gene expression in F. cylindrus. This approach enables to study differential expression of alleles in a complex genomic landscape and provides a useful tool to study how diverged haplotypes in diploid organisms are used for adaptation and evolution to highly variable environments.
    Materialart: Article , PeerReviewed
    Format: text
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 3
    Publikationsdatum: 2024-02-07
    Beschreibung: Zinc is an essential trace metal for oceanic primary producers with the highest concentrations in polar oceans. However, its role in the biological functioning and adaptive evolution of polar phytoplankton remains enigmatic. Here, we have applied a combination of evolutionary genomics, quantitative proteomics, co-expression analyses and cellular physiology to suggest that model polar phytoplankton species have a higher demand for zinc because of elevated cellular levels of zinc-binding proteins. We propose that adaptive expansion of regulatory zinc-finger protein families, co-expanded and co-expressed zinc-binding proteins families involved in photosynthesis and growth in these microalgal species and their natural communities were identified to be responsible for the higher zinc demand. The expression of their encoding genes in eukaryotic phytoplankton metatranscriptomes from pole-to-pole was identified to correlate not only with dissolved zinc concentrations in the upper ocean but also with temperature, suggesting that environmental conditions of polar oceans are responsible for an increased demand of zinc. These results suggest that zinc plays an important role in supporting photosynthetic growth in eukaryotic polar phytoplankton and that this has been critical for algal colonization of low-temperature polar oceans.
    Materialart: Article , PeerReviewed
    Format: text
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 4
    Publikationsdatum: 2019-03-08
    Beschreibung: The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent from those of temperate diatoms (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , isiRev
    Standort Signatur Einschränkungen Verfügbarkeit
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