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  • 1
    Publication Date: 2023-05-02
    Description: DNA sequencing shows that species of the genera Notorotalia, Porosorotalia and Buccella form a distinct branch (Notorotaliidae) of Rotaloidea, and cluster as sister to Elphidiidae. In this review we report on the sequencing of three species of Buccella (from the Arctic Ocean, Patagonia and Chile) and one each of Notorotalia (New Zealand) and Porosorotalia (Chile). This information has been combined with all the morphological descriptive information on species of these genera plus the genera Cristatavultus and Parrellina to provide a global synthesis of living species of the Notorotaliidae. We recognize 11 species of the southern hemisphere genus Notorotalia, which has a centre of diversity around New Zealand (8 species). A second southern-hemisphere-restricted genus, restricted to eastern Australia is Parrellina (3 species) although specimens (possibly introduced) have been recorded from the Mediterranean Sea. Cristatavultus has a single species, with a tropical west Pacific distribution.We synonymize Cribrorotalia under Porosorotalia, which has a disjunct distribution with one species in the northwest Pacific and a second around the southern parts of South America. Buccella is the most diverse and widespread genus (16 species recognized) with its greatest abundance in the Arctic Ocean and around subantarctic-temperate South America. Five species of Buccella live in a belt along the west coast of central America, from USAto Peru, with some spillage into the Caribbean Sea and Gulf of Mexico. Two new species of Buccella are recognized: B. dejardini (from South Georgia) and Buccella n. sp. A (from Chile).
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
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  • 2
    ISSN: 1432-1432
    Keywords: Foraminifera ; Sequence dissimilarity ; LSU rRNA gene ; Phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract An unusually high divergence was observed in the ribosomal RNA genes of a free-living population of foraminifera belonging to the genusAmmonia. The sequences of a large-subunit (LSU) rDNA expansion segment D1 and flanking regions were obtained from 20 specimens namedAmmonia sp. 1 andAmmonia sp. 2. The sequence divergence between the two species averages 14%. Within each species it ranges from 0.2% to 7.1% inAmmonia sp. 1 and from 0.7% to 2.3% inAmmonia sp. 2. We did not find two specimens having identical sequences. Moreover, in opposition to the generally acaepted view, rDNA sequence variations were also found within a single individual. The variations among several rDNA copies in a single specimen ofAmmonia may reach up to 4.9%. Most of the observed variations result from multiplication of CA or TA serial repeats occurring in two particularly variable regions. For single base changes, C-T transitions are most frequently observed. We discuss the evolution of expansion segments and their use for phylogenetic studies.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 48 (2001), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . Large miliolid foraminifers of the subfamily Soritinae bear symbiotic dinoflagellates morphologically similar to the species of the “Symbiodinium” complex, commonly found in corals and other marine invertebrates. Soritid foraminifers are abundant in coral reefs and it has been proposed that they share their symbionts with other dinoflagellate-bearing reef dwellers. In order to test this hypothesis, we have analysed partial large subunit ribosomal DNA sequences from dinoflagellates symbionts obtained from 28 foraminiferal specimens, and compared them to the corresponding sequences of Symbiodinium-like endosymbionts from various groups of invertebrates. Phylogenetic analysis of our data shows that all soritid symbionts belong to the “Symbiodinium” species complex, within which they form seven different molecular types (Fr1–Fr7). Only one of these types (Fr1) branches within a group of invertebrate symbionts, previously described as type C. The remaining six types form sister groups to coral symbionts previously designed as types B, C, and D. Our data indicate a high genetic diversity and specificity of Symbiodinium-like symbionts in soritids. Except for type C, we have found no evidence for the transmission of symbionts between foraminifers and other symbiont-bearing invertebrates from the same localities. However, exchanges must have occurred frequently between the different species of Soritinae, as suggested by the lack of host specificity and some biogeographical patterns observed in symbiont distribution. Our data suggest that members of the subfamily Soritinae acquired their symbionts at least three times during their history, each acquisition being followed by a rapid diversification and independent radiation of symbionts within the foraminiferal hosts.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 50 (2003), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . Xenophyophorea are giant deep-sea rhizopodial protists of enigmatic origins. Although species were described as Foraminifera or sponges in the early literature, the xenophyophoreans are currently classified either as a class of Rhizopoda or an independent phylum. To establish the phylogenetic position of Xenophyophorea, we analysed the small subunit (SSU) rRNA gene sequence of Syringammina corbicula Richardson, a newly described xenophyophorean species from the Cape Verde Plateau. The SSUrDNA analyses showed that S. corbicula is closely related to Rhizammina algaeformis, a tubular deep-sea foraminiferan. Both species branch within a group of monothalamous (single-chambered) Foraminifera, which include also such agglutinated genera as Toxisarcon, Rhabdammina, and Saccammina, and the organic-walled genera Gloiogullmia and Cylindrogullmia. Our results are congruent with observations of similar cytoplasmic organisation in Rhizammina and Syringammina. Thus, the Xenophyophorea appear to be a highly specialised group of deep-sea Foraminifera.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 50 (2003), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . Sediment-dwelling protists are among the most abundant meiobenthic organisms, ubiquitous in all types of aquatic ecosystems. Yet, because their isolation and identification are difficult, their diversity remains largely unknown. In the present work, we applied molecular methods to examine the diversity of freshwater Foraminifera, a group of granuloreticulosan protists largely neglected until now. By using specific PCR primers, we detected the presence of Foraminifera in all sediment samples examined. Phylogenetic analysis of amplified SSU rDNA sequences revealed two distinct groups of freshwater foraminiferans. All obtained sequences branched within monothalamous (single-chambered), marine Foraminifera, suggesting a repeated colonization of freshwater environments. The results of our study challenge the traditional view of Foraminifera as essentially marine organisms, and provide a conceptual framework for charting the molecular diversity of freshwater granuloreticulosan protists.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    The @journal of eukaryotic microbiology 48 (2001), S. 0 
    ISSN: 1550-7408
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: . Large miliolid foraminifers bear various types of algal endosymbionts including chlorophytes, dinoflagellates, rhodophytes, and diatoms. Symbiosis plays a key role in the adaptation of large foraminifera to survival and growth in oligotrophic seas. The identity and diversity of foraminiferal symbionts, however, remain largely unknown. In the present work we use ribosomal DNA (rDNA) sequences to identify chlorophyte endosymbionts in large miliolid foraminifera of the superfamily Soritacea. Partial 18S and complete Internal Transcribed Spacer (ITS) rDNA sequences were obtained from symbionts of eight species representing all genera of extant chlorophyte-bearing Soritacea. Phylogenetic analysis of the sequences confirms the previous fine structure-based identification of these endosymbionts as belonging to the genus Chlamydomonas. All foraminiferal symbionts form a monophyletic group closely related to Chlamydomonas noctigama. The group is composed of seven types identified in this study, including one previously morphologically described species, Chlamydomonas hedleyi. Each of these types can be considered as a separate species, based on the comparison of genetic differences observed between other established Chlamydomonas species. Several foraminiferal species share the same symbiont type, but only one species, Archaias angulatus, was found to bear more than one type.
    Type of Medium: Electronic Resource
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  • 7
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    PANGAEA
    In:  Supplement to: Kucera, Michal; Silye, Lóránd; Weiner, Agnes K M; Darling, Kate F; Lübben, Birgit; Holzmann, Maria; Pawlowski, Jan; Schönfeld, Joachim; Morard, Raphael (2017): Caught in the act: Anatomy of an ongoing benthic-planktonic transition in a marine protist. Journal of Plankton Research, 39 (3), 436-449, https://doi.org/10.1093/plankt/fbx018
    Publication Date: 2023-03-03
    Description: The transition from benthos to plankton requires multiple adaptations, yet so far it remains unclear how these are acquired in the course of the transition. To investigate this process, we analyzed the genetic diversity and distribution patterns of a group of foraminifera of the genus Bolivina with a tychopelagic mode of life (same species occurring both in benthos and plankton). We assembled a global sequence dataset for this group from single-cell DNA extractions and occurrences in metabarcodes from pelagic environmental samples. The pelagic sequences all cluster within a single monophyletic clade within Bolivina. This clade harbors three distinct genetic lineages, which are associated with incipient morphological differentiation. All lineages occur in plankton and benthos, but only one lineage shows no limit to offshore dispersal and has been shown to grow in the plankton. These observations indicate that the emergence of buoyancy regulation within the clade preceded the evolution of pelagic feeding and that the evolution of both traits was not channeled into a full transition into the plankton. We infer that in foraminifera, colonization of the planktonic niche may occur by sequential cooptation of independently acquired traits, with holoplanktonic species being recruited from tychopelagic ancestors.
    Keywords: Center for Marine Environmental Sciences; MARUM
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 8
    Publication Date: 2023-03-03
    Keywords: 1; 2; Center for Marine Environmental Sciences; Elevation of event; Elliptic fourier description; Event label; GeoB16602-2; Identification; INVERS; Latitude of event; Longitude of event; M69/1; M69/1_324-2; M69/1_USW8; MARUM; Meteor (1986); MSN; Multiple opening/closing net; PLA; Plankton net; Puerto_Rico_2012-1; Puerto_Rico_2012-2; PUMP; SO221; Sonne; Water pump
    Type: Dataset
    Format: text/tab-separated-values, 2511 data points
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  • 9
    Publication Date: 2023-03-03
    Keywords: Center for Marine Environmental Sciences; File format; File name; File size; MARUM; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 16 data points
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  • 10
    Publication Date: 2023-03-03
    Keywords: 1; 2; Center for Marine Environmental Sciences; Cumulative power; Elevation of event; Event label; Fourier power; GeoB16602-2; Identification; INVERS; Latitude of event; Longitude of event; M69/1; M69/1_324-2; M69/1_USW8; MARUM; Meteor (1986); MSN; Multiple opening/closing net; PLA; Plankton net; Puerto_Rico_2012-1; Puerto_Rico_2012-2; PUMP; Ratio; SO221; Sonne; Water pump
    Type: Dataset
    Format: text/tab-separated-values, 1829 data points
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