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  • 1
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Microbial communities were characterized at contaminated sites that had elevated levels of nitrate, nickel, aluminum, and uranium (up to 690 mM, 310 μM, 42 mM, and 30 μM, respectively). The bacterial community structure based upon clonal libraries of the SSU rRNA genes (screened clones = 876) was diverse at the background site, but the three acidic samples had decreased diversity and the majority of clones were closely related to Azoarcus and Pseudomonas species. Arthrobacter and Novosphingobium sequences were recovered from the background samples but not the acidic sites, and similar pseudomonad populations were present at the background and acidic sites albeit at different relative abundances. Heterologous sequence coverage analyses indicated the microbial communities at the contaminated sites were very similar (p= 0.001) but different from the background site. Bacterial isolates (n= 67) classified as β-or γ-Proteobacteria, high G+C Gram-positive or low G+C Gram-positive were obtained from the background and one contaminated sample, and some of the isolates had less than 95% sequence identity with previously observed microorganisms. Despite variations in nitrate and heavy metal levels and different proximities to the source ponds, the three acidic samples had similar microbial populations. However, the least contaminated site (lowest nitrate and aluminum) had increased diversity compared to the other acidic samples. The results suggested that the combined contamination has decreased the microbial diversity, and Azoarcus populations were observed at a drastically increased frequency compared to the background site that had a more even distribution of multiple taxa.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 154 (1997), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: A mutant of Prevotella ruminicola B14 was isolated after chemical mutagenesis with ethylmethanesulfonate. The mutant, MW1, did not produce polypeptides that cross-reacted with antibody to wild-type β-1,4-endoglucanase and virtually no β-1,4-endoglucanase or mannanase activity was detected. MW1 grew more slowly on cellodextrins and no growth was observed with guar gum (mannan) as an energy source. MW1 cultures that were repeatedly transferred with cellobiose and mannan eventually regained the ability to utilize mannan as an energy source. The revertant (MW1R) had 40 and 25% of β-1,4-endoglucanase and mannanase activities compared to wild-type B14, respectively. Western immunoblots indicated that MW1R produced a β-1,4-endoglucanase that could crossreact with wild-type B14 enzyme. Wild-type B14 had β-1,4-endoglucanase and mannanase activities when either cellobiose or mannan was the energy source, but MW1R had these activities only when mannan was provided.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 183 (2000), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Prevotella bryantii B14 grew faster on glucose than mannose (0.70 versus 0.45 h−1), but these sugars were used simultaneously rather than diauxically. 2-deoxy-glucose (2DG) decreased the growth rate of cells that were provided with either glucose or mannose, but 2DG did not completely prevent growth. Cells grown on glucose or mannose transported both 14C-glucose and 14C-mannose, but cells grown on glucose had over three-fold higher rates of 14C-glucose transport than cells grown on mannose. The 14C-mannose transport rates of glucose- and mannose-grown cells were similar. Woolf-Augustinsson-Hofstee plots were not linear, and it appeared that the glucose/mannose/2DG carrier acted as a facilitated diffusion system at high substrate concentrations. When cultures were grown on nitrogen-deficient (excess sugar) medium, isolates had three-fold lower 14C-glucose transport, but the 14C-mannose transport did not change significantly. 14C-glucose and 14C-mannose transport rates could be inhibited by 2DG and either mannose or glucose, respectively. The 14C-glucose transport of mannose-grown cells was inhibited more strongly by mannose and 2DG than those grown on glucose. Cells grown on glucose or mannose had similar ATP-dependent glucokinase activity, and 2DG was a competitive inhibitor (Ki=0.75 mM). Thin layer chromatography indicated that cell extracts also had ATP-dependent mannose phosphorylation, but only a small amount of phosphorylated 2DG was detected. Glucose, mannose or 2DG were not phosphorylated in the presence of PEP. Based on these results, it appeared that P. bryantii B14 had: (1) two mechanisms of glucose transport, a constitutive glucose/mannose/2DG carrier and an alternative glucose carrier that was regulated by glucose availability, (2) an ATP-dependent glucokinase that was competitively inhibited by 2DG but was unable to phosphorylate 2DG at a rapid rate, and (3) virtually no PEP-dependent glucose, mannose or 2DG phosphorylation activities.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 27 (1998), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The non-cellulolytic ruminal bacterium, Prevotella bryantii, grew rapidly on water soluble β-glucans, but a mutant deficient in carboxymethylcellulase (CMCase) activity could not. Native activity gels prepared with CMC and β-glucan indicated that the CMCase and β-glucanase activities migrated at similar rates. When a plasmid carrying the P. bryantii CMCase was transferred to Escherichia coli, the clone had CMCase and β-glucanase activities. P. bryantii grew on mixed β-1,3-1,4 glucans, but not on β-1,3 glucan, and similar results were obtained with the cellulolytic ruminal bacteria (Fibrobacter succinogenes S85, Ruminococcus flavefaciens FD1 and Ruminococcus albus B199). Mixed ruminal bacteria from cattle fed hay had twice as much CMCase activity as bacteria from cattle fed 90% cereal grain (P〈0.05), and the CMCase and β-glucanase activities were highly correlated (r2=0.93) for the 22 samples tested. The CMCase and β-glucanase activities of mixed ruminal bacteria migrated slowly through polyacrylamide gels, but the migration distances were approximately the same. When β-glucan-utilizing ruminal bacteria were isolated from cattle fed hay or 90% cereal grain, 70 and 38% of the strains, respectively, had CMCase activity. A similar trend was observed with cellobiose-utilizing isolates (70 and 35%, respectively, were CMCase positive). All CMCase positive, cellobiose-utilizing ruminal bacteria could grow on β-glucan. CMCase activity was not strongly correlated with cellulose utilization, and less than 15% of the CMCase positive isolates grew on ball-milled cellulose. Based on these results, the cell-associated CMCases of ruminal bacteria provide a mechanism for utilizing water soluble β-glucans from cereal grains.
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1432-0991
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract. When Escherichia coli XL1-Blue MRA (P2) was infected with λ DNA containing Prevotella ruminicola B14 chromosomal DNA, only a few plaques produced β-1,4-endoglucanase activity, and all of these had mannanase activity. Positive phage contained a 17-kb SacI DNA fragment that gave six bands after EcoRI digestion. The EcoRI fragments were ligated into pBluescript and sequenced. The order of the fragments was verified by PCR and by restriction mapping. The DNA sequence contained 6 open reading frames (ORFs). The 4th and 5th ORFs encoded two related β-1,4-endoglucanases. E. coli clones carrying ORF5 and ORF6 had β-1,4-endoglucanase and mannanase activities, while a clone carrying only ORF6 hydrolyzed mannan but not carboxymethylcellulose. The 6th ORF had three regions of homology to mannanase A from Pseudomonas fluorescens. Based on these results, ORF6 encoded the mannanase gene. The 3rd ORF had 10 regions of homology with cellulose-binding protein A from Clostridium cellulovorans. The 1st and 2nd ORFs had no significant homology to genes or amino acid sequences in GeneBank or SwissProt. All of the ORFs except 1 encoded a potential signal peptide sequence. The upstream region of ORF1 contained four direct repeats and four inverted repeat elements, but no apparent σ70 sequence-like promoter was present. The segment of DNA containing the 6 ORFs was preceded and followed by potential transcription termination signals suggesting a single transcriptional unit.
    Type of Medium: Electronic Resource
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  • 6
    Publication Date: 2023-02-08
    Description: Highlights • Archaeal community composition reflects locally specific environmental challenges • Biogeochemical properties do not predict archaeal community structure • Environmental history controls subseafloor archaeal populations Summary We explore archaeal distributions in sedimentary subseafloor habitats of Guaymas Basin and the adjacent Sonora Margin, located in the Gulf of California, México. Sampling locations include (1) control sediments without hydrothermal or seep influence, (2) Sonora Margin sediments underlying oxygen minimum zone water, (3) compacted, highly reduced sediments from a pressure ridge with numerous seeps at the base of the Sonora Margin, and (4) sediments impacted by hydrothermal circulation at the off-axis Ringvent site. Generally, archaeal communities largely comprise Bathyarchaeal lineages, members of the Hadesarchaea, MBG-D, TMEG, and ANME-1 groups. Variations in archaeal community composition reflect locally specific environmental challenges. Background sediments are divided into surface and subsurface niches. Overall, the environmental setting and history of a particular site, not isolated biogeochemical properties out of context, control the subseafloor archaeal communities in Guaymas Basin and Sonora Margin sediments.
    Type: Article , PeerReviewed
    Format: text
    Format: text
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