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  • 1
    In: BMC Evolutionary Biology, Springer Science and Business Media LLC, Vol. 7, No. 1 ( 2007-12)
    Abstract: Maintenance of homeostasis requires that an organism perceive selected physical and chemical signals within an informationally dense environment. Functionally, an organism uses a variety of signal transduction arrays to amplify and convert these perceived signals into appropriate gene transcriptional responses. These changes in gene expression serve to modify selective metabolic processes and thus optimize reproductive success. Here we analyze a chloroplast-encoded His-to-Asp signal transduction circuit in the stramenopile Heterosigma akashiwo (Hada) Hada ex Y. Hara et Chihara [syn. H. carterae (Hulburt) F.J.R. Taylor]. The presence, structure and putative function of this protein pair are discussed in the context of their evolutionary homologues. Results Bioinformatic analysis of the Heterosigma akashiwo chloroplast genome sequence revealed the presence of a single two-component His-to-Asp (designated Tsg1/Trg1) pair in this stramenopile (golden-brown alga). These data represent the first documentation of a His-to-Asp array in stramenopiles and counter previous reports suggesting that such regulatory proteins are lacking in this taxonomic cluster. Comparison of the 43 kDa H. akashiwo Tsg1 with bacterial sensor kinases showed that the algal protein exhibits a moderately maintained PAS motif in the sensor kinase domain as well as highly conserved H, N, G 1 and F motifs within the histidine kinase ATP binding site. Molecular modelling of the 27 kDa H. akashiwo Trg1 regulator protein was consistent with a winged helix-turn-helix identity – a class of proteins that is known to impact gene expression at the level of transcription. The occurrence of Trg1 protein in actively growing H. akashiwo cells was verified by Western analysis. The presence of a PhoB-like RNA polymerase loop in Trg1 and its homologues in the red-algal lineage support the hypothesis that Trg1 and its homologues interact with a sigma 70 (σ 70 ) subunit (encoded by rpoD ) of a eubacterial type polymerase. Sequence analysis of H. akashiwo rpoD showed this nuclear-encoded gene has a well-defined 4.2 domain, a region that augments RNA polymerase interaction with transcriptional regulatory proteins and also serves in -35 promoter recognition. The presence/loss of the His-to-Asp pairs in primary and secondary chloroplast lineages is assessed. Conclusion His-to-Asp signal transduction components are found in most rhodophytic chloroplasts, as well as in their putative cyanobacterial progenitors. The evolutionary conservation of these proteins argues that they are important for the maintenance of chloroplast homeostasis. Our data suggest that chloroplast gene transcription may be impacted by the interaction of the His-to-Asp regulator protein (which is less frequently lost than the sensor protein) with the RNA polymerase σ 70 subunit.
    Type of Medium: Online Resource
    ISSN: 1471-2148
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2007
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  • 2
    Online Resource
    Online Resource
    American Society for Microbiology ; 2004
    In:  Applied and Environmental Microbiology Vol. 70, No. 7 ( 2004-07), p. 4144-4150
    In: Applied and Environmental Microbiology, American Society for Microbiology, Vol. 70, No. 7 ( 2004-07), p. 4144-4150
    Abstract: The large tropical lucinid clam Codakia orbicularis has a symbiotic relationship with intracellular, sulfide-oxidizing chemoautotrophic bacteria. The respiration strategies utilized by the symbiont were explored using integrative techniques on mechanically purified symbionts and intact clam-symbiont associations along with habitat analysis. Previous work on a related symbiont species found in the host lucinid Lucinoma aequizonata showed that the symbionts obligately used nitrate as an electron acceptor, even under oxygenated conditions. In contrast, the symbionts of C. orbicularis use oxygen as the primary electron acceptor while evidence for nitrate respiration was lacking. Direct measurements obtained by using microelectrodes in purified symbiont suspensions showed that the symbionts consumed oxygen; this intracellular respiration was confirmed by using the redox dye CTC (5-cyano-2,3-ditolyl tetrazolium chloride). In the few intact chemosymbioses tested in previous studies, hydrogen sulfide production was shown to occur when the animal-symbiont association was exposed to anoxia and elemental sulfur stored in the thioautotrophic symbionts was proposed to serve as an electron sink in the absence of oxygen and nitrate. However, this is the first study to show by direct measurements using sulfide microelectrodes in enriched symbiont suspensions that the symbionts are the actual source of sulfide under anoxic conditions.
    Type of Medium: Online Resource
    ISSN: 0099-2240 , 1098-5336
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2004
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  • 3
    Online Resource
    Online Resource
    Informa UK Limited ; 1999
    In:  Invertebrate Reproduction & Development Vol. 36, No. 1-3 ( 1999-09), p. 93-103
    In: Invertebrate Reproduction & Development, Informa UK Limited, Vol. 36, No. 1-3 ( 1999-09), p. 93-103
    Type of Medium: Online Resource
    ISSN: 0792-4259 , 2157-0272
    Language: English
    Publisher: Informa UK Limited
    Publication Date: 1999
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    SSG: 12
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  • 4
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2022
    In:  Cancer Research Vol. 82, No. 12_Supplement ( 2022-06-15), p. 3375-3375
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 82, No. 12_Supplement ( 2022-06-15), p. 3375-3375
    Abstract: Background: Recently, a new molecular classification of small cell lung cancer (SCLC), defined by expression of four key transcription regulators - ASCL1, NEUROD1, YAP1 and POU2F3 - has been proposed. These molecular subtypes may confer differential biology and therapeutic vulnerabilities, however, studies to date have been constrained by the paucity of available longitudinal tumor biopsy samples obtained from patients with SCLC. Herein, we utilized circulating tumor cells (CTCs) to characterize subtype marker heterogeneity at the time of diagnosis and evaluate the dynamic nature of marker expression during treatment in patients with SCLC. Methods: Informed consent was obtained from patients with SCLC using an IRB approved protocol (IRB#030763). We have collected blood samples from 32 patients, including treatment naïve samples from the entire cohort as well as on-treatment samples (median of 4 collections per patient). We utilized the RareCyte rare-cell analysis platform to isolate and quantify CTCs, which were defined as CK/EpCAM positive and CD45 negative. Each sample was also evaluated for expression of neuroendocrine markers (ASCL1, NEUROD1) and non-neuroendocrine markers (YAP1, POU2F3). Each set of neuroendocrine and non-neuroendocrine markers were co-stained along with the CTC markers. Mean fluorescence intensity of each marker was extracted using a python program. Results: To date, we have analyzed 22/32 (69%) treatment naïve samples, including n=6 patients with early stage disease and n=16 patients with advanced/metastatic disease. We detected CTCs from 16/22 (73%) patients, with quantities ranging from 1 - 3406 (median = 66) per 7.5ml of blood. CTCs were positive for the neuroendocrine markers ASCL1 in 16/16 (100%) and NEUROD1 in 10/16 (62%); all NEUROD1 positive CTCs were also positive for ASCL1. The non-neuroendocrine markers YAP1 and POU2F3 were detected in 6/16 (37%) and 11/16 (69%) samples, respectively, including YAP1/POU2F3 double positives in 6/16 (37%). Analysis of on-treatment samples is ongoing. Conclusion: We have developed a protocol for monitoring expression of subtype markers on CTCs isolated from patients with SCLC. We found CTCs expressing both neuroendocrine and non-neuroendocrine markers at the time of diagnosis. Ongoing work will attempt to delineate the dynamic nature of subtype marker expression during therapy, to correlate with clinical outcomes. These studies have the potential to offer critical insights regarding the heterogeneity and evolution of SCLC, a tumor type in which novel disease insights and innovative treatment strategies are urgently needed to improve patient survival. Citation Format: Prasad R. Kopparapu, Melinda Duplessis, Edward Lo, Yingjun Yan, Wade T. Iams, Josh Nordberg, Arturo Ramirez, Tad George, Christine Lovly. Molecular subtyping of circulating tumor cells in patients with small cell lung cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 3375.
    Type of Medium: Online Resource
    ISSN: 1538-7445
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2022
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